MGE detailed information
MGE type: Conjugative plasmid MGE length: 62174 bp
Accession: NZ_LR890290 Location: 1..62174 Organism: Escherichia coli isolate MSB1_1A-sc-2280383 Replicon: plasmid 3
Accession: NZ_LR890290 Location: 1..62174 Organism: Escherichia coli isolate MSB1_1A-sc-2280383 Replicon: plasmid 3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW08_RS23950 () | 1..858 | + | 858 | WP_000130646.1 | incFII family plasmid replication initiator RepA | - |
| JMW08_RS23955 () | 1773..2042 | + | 270 | WP_000079928.1 | hypothetical protein | Antitoxin Detail |
| JMW08_RS23960 () | 2039..2320 | + | 282 | WP_000970000.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| JMW08_RS23965 () | 2366..2998 | + | 633 | WP_001058006.1 | 3'-5' exonuclease | - |
| JMW08_RS23970 () | 3133..3483 | - | 351 | WP_001365718.1 | plasmid partitioning/stability family protein | - |
| JMW08_RS23975 () | 3486..4448 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| JMW08_RS23980 () | 4651..4806 | - | 156 | WP_001137525.1 | hypothetical protein | - |
| JMW08_RS23985 () | 4971..5873 | + | 903 | WP_001425207.1 | DUF1281 domain-containing protein | - |
| JMW08_RS23990 () | 5870..6181 | + | 312 | WP_171767207.1 | hypothetical protein | - |
| JMW08_RS23995 () | 6258..6941 | + | 684 | WP_000085885.1 | DNA methylase | - |
| JMW08_RS24000 () | 6942..7163 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| JMW08_RS24005 () | 7177..7611 | + | 435 | WP_000274447.1 | DUF1380 family protein | - |
| JMW08_RS24010 () | 7656..8426 | + | 771 | WP_001006238.1 | hypothetical protein | - |
| JMW08_RS24015 () | 8965..9267 | + | 303 | WP_072257078.1 | antirestriction protein | - |
| JMW08_RS24020 () | 9314..9736 | + | 423 | WP_000271722.1 | DUF1380 family protein | - |
| JMW08_RS24025 () | 9733..9924 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| JMW08_RS24030 () | 10965..11195 | + | 231 | WP_000155844.1 | hypothetical protein | - |
| JMW08_RS24035 () | 11247..12608 | + | 1362 | WP_000170665.1 | DUF3560 domain-containing protein | - |
| JMW08_RS24040 () | 12654..13217 | + | 564 | WP_001298559.1 | class I SAM-dependent methyltransferase | - |
| JMW08_RS24045 () | 13303..13764 | - | 462 | WP_160371810.1 | hypothetical protein | - |
| JMW08_RS24050 () | 14066..14593 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| JMW08_RS24055 () | 14651..14884 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| JMW08_RS24060 () | 14945..16909 | + | 1965 | WP_000117319.1 | ParB/RepB/Spo0J family partition protein | - |
| JMW08_RS24065 () | 16978..17412 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| JMW08_RS24070 () | 17409..18128 | + | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| - () | 18140..18364 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 18140..18364 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 18140..18364 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 18140..18364 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 18140..18364 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| JMW08_RS24075 () | 18149..18328 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| - () | 18297..18362 | + | 66 | NuclAT_1 | - | Antitoxin Detail |
| JMW08_RS24080 () | 18408..18566 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| JMW08_RS24085 () | 18804..19181 | - | 378 | Protein_28 | hypothetical protein | - |
| JMW08_RS24090 () | 19481..19777 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| JMW08_RS24095 () | 19888..20709 | + | 822 | WP_001234445.1 | DUF945 domain-containing protein | - |
| JMW08_RS24100 () | 21006..21596 | - | 591 | WP_148713293.1 | hypothetical protein | VF |
| JMW08_RS24105 () | 21939..22322 | + | 384 | WP_001151562.1 | relaxosome protein TraM | - |
| JMW08_RS24110 () | 22516..23202 | + | 687 | WP_000332499.1 | PAS domain-containing protein | - |
| JMW08_RS24115 () | 23296..23523 | + | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| JMW08_RS24120 () | 23557..23916 | + | 360 | WP_001098994.1 | type IV conjugative transfer system pilin TraA | - |
| JMW08_RS24125 () | 23931..24242 | + | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| JMW08_RS24130 () | 24264..24830 | + | 567 | WP_000399779.1 | type IV conjugative transfer system protein TraE | - |
| JMW08_RS24135 () | 24817..25545 | + | 729 | WP_001230772.1 | type-F conjugative transfer system secretin TraK | - |
| JMW08_RS24140 () | 25545..26972 | + | 1428 | WP_000146665.1 | conjugal transfer protein TraB | - |
| JMW08_RS24145 () | 26962..27552 | + | 591 | WP_000002784.1 | conjugal transfer protein TraP | - |
| JMW08_RS24150 () | 27491..27859 | + | 369 | WP_001315561.1 | conjugal transfer protein TrbD | - |
| JMW08_RS24155 () | 27856..28371 | + | 516 | WP_000809881.1 | type IV conjugative transfer system lipoprotein TraV | - |
| JMW08_RS24160 () | 28506..28727 | + | 222 | WP_001278683.1 | conjugal transfer protein TraR | - |
| JMW08_RS24165 () | 28720..29196 | + | 477 | WP_000549577.1 | hypothetical protein | - |
| JMW08_RS24170 () | 29295..29513 | + | 219 | WP_001405917.1 | hypothetical protein | - |
| JMW08_RS24175 () | 29541..29888 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| JMW08_RS24180 () | 30014..32644 | + | 2631 | WP_000069772.1 | type IV secretion system protein TraC | - |
| JMW08_RS24185 () | 32641..33027 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| JMW08_RS24190 () | 33024..33656 | + | 633 | WP_001203715.1 | type-F conjugative transfer system protein TraW | - |
| JMW08_RS24195 () | 33653..34645 | + | 993 | WP_000830849.1 | conjugal transfer pilus assembly protein TraU | - |
| JMW08_RS24200 () | 34672..34980 | + | 309 | WP_000412445.1 | hypothetical protein | - |
| JMW08_RS24205 () | 35043..35195 | + | 153 | WP_201522903.1 | hypothetical protein | - |
| JMW08_RS24210 () | 35271..36499 | + | 1229 | WP_201522897.1 | IS3 family transposase IS2 | Transposase |
| JMW08_RS24215 () | 36484..36897 | + | 414 | WP_201522899.1 | hypothetical protein | - |
| JMW08_RS24220 () | 36924..37562 | + | 639 | WP_000087533.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| JMW08_RS24225 () | 37559..37930 | + | 372 | WP_000056339.1 | hypothetical protein | - |
| JMW08_RS24230 () | 37956..38378 | + | 423 | WP_001229309.1 | HNH endonuclease | - |
| JMW08_RS24235 () | 38375..40225 | + | 1851 | WP_000826178.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| JMW08_RS24240 () | 40252..40509 | + | 258 | WP_000864353.1 | conjugal transfer protein TrbE | - |
| JMW08_RS24245 () | 40502..41245 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| JMW08_RS24250 () | 41259..41603 | + | 345 | WP_000556796.1 | conjugal transfer protein TrbA | - |
| JMW08_RS24255 () | 41722..42006 | + | 285 | WP_000624194.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| JMW08_RS24260 () | 41993..42538 | + | 546 | WP_000059831.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| JMW08_RS24265 () | 42468..42815 | + | 348 | WP_001309242.1 | P-type conjugative transfer protein TrbJ | - |
| JMW08_RS24270 () | 42763..43188 | + | 426 | WP_001444237.1 | F-type conjugal transfer protein TrbF | - |
| JMW08_RS24275 () | 43175..44548 | + | 1374 | WP_000944331.1 | conjugal transfer protein TraH | - |
| JMW08_RS24280 () | 44545..47367 | + | 2823 | WP_001007039.1 | conjugal transfer mating pair stabilization protein TraG | - |
| JMW08_RS24285 () | 47383..47868 | + | 486 | WP_000605870.1 | hypothetical protein | - |
| JMW08_RS24290 () | 47917..48648 | + | 732 | WP_000782451.1 | complement resistance protein TraT | - |
| JMW08_RS24295 () | 48851..49588 | + | 738 | WP_000199905.1 | hypothetical protein | - |
| JMW08_RS24300 () | 49639..51828 | + | 2190 | WP_017901267.1 | type IV conjugative transfer system coupling protein TraD | - |
| JMW08_RS24305 () | 51828..57098 | + | 5271 | WP_201522901.1 | Multifunctional conjugation protein TraI | Relaxase |
| JMW08_RS24310 () | 57118..57864 | + | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| JMW08_RS24315 () | 57923..58783 | + | 861 | WP_000704523.1 | putative protein YcjY | VF |
| JMW08_RS24320 () | 58886..59446 | + | 561 | WP_000139321.1 | fertility inhibition protein FinO | - |
| JMW08_RS24325 () | 59575..59787 | + | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| JMW08_RS24330 () | 60032..60493 | + | 462 | WP_001233838.1 | thermonuclease family protein | - |
| JMW08_RS24335 () | 60539..60748 | + | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| JMW08_RS24340 () | 60786..61376 | + | 591 | WP_000766807.1 | DUF2726 domain-containing protein | - |
| JMW08_RS24345 () | 61616..61870 | + | 255 | WP_000083830.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|