MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_LM995446 Location: 1360897..1382571 Organism: Escherichia coli strain K-12 substr. RV308 Replicon: chromosome
Accession: NZ_LM995446 Location: 1360897..1382571 Organism: Escherichia coli strain K-12 substr. RV308 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECRV308_RS06800 () | 1356947..1357930 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| ECRV308_RS06810 () | 1358408..1359781 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| ECRV308_RS06815 () | 1359910..1360845 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| ECRV308_RS23415 () | 1360897..1362132 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| ECRV308_RS06825 () | 1362134..1362349 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| ECRV308_RS06830 () | 1362428..1362637 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 1362453..1362631 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1362453..1362631 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1362453..1362631 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1362453..1362631 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| ECRV308_RS06835 () | 1362630..1362824 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| ECRV308_RS06840 () | 1362881..1363690 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| ECRV308_RS06845 () | 1363683..1366283 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| ECRV308_RS06850 () | 1366385..1366660 | - | 276 | WP_000632297.1 | protein RacC | - |
| ECRV308_RS06855 () | 1366735..1366905 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| ECRV308_RS06860 () | 1366905..1367126 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| ECRV308_RS06865 () | 1367568..1368056 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| ECRV308_RS22735 () | 1368053..1368208 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| ECRV308_RS06870 () | 1368662..1369138 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| ECRV308_RS06875 () | 1369262..1369558 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| ECRV308_RS06880 () | 1369581..1370003 | + | 423 | WP_000693797.1 | phage protein | - |
| ECRV308_RS06885 () | 1370016..1370873 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| ECRV308_RS06890 () | 1370880..1371626 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| ECRV308_RS06895 () | 1371649..1372101 | + | 453 | Protein_1306 | DUF1627 domain-containing protein | - |
| ECRV308_RS24765 () | 1372297..1372482 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| ECRV308_RS06905 () | 1372679..1374136 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| ECRV308_RS06910 () | 1374274..1374537 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| ECRV308_RS06915 () | 1374518..1374877 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| ECRV308_RS06925 () | 1375351..1376283 | + | 933 | Protein_1311 | phage tail length tape measure family protein | - |
| ECRV308_RS06930 () | 1376286..1376501 | + | 216 | Protein_1312 | Ail/Lom family outer membrane beta-barrel protein | - |
| ECRV308_RS06935 () | 1376643..1377623 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| ECRV308_RS24770 () | 1377693..1377881 | + | 189 | Protein_1314 | Ail/Lom family outer membrane beta-barrel protein | - |
| ECRV308_RS23440 () | 1377946..1381308 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| ECRV308_RS06960 () | 1381308..1381883 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| ECRV308_RS06965 () | 1381981..1382571 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| ECRV308_RS06970 () | 1382888..1383121 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| ECRV308_RS25290 () | 1383190..1383303 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| ECRV308_RS06975 () | 1384082..1384516 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| ECRV308_RS06980 () | 1384657..1385790 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |