NZ_CP1232411..160923

MGE detailed information

MGE type: Conjugative plasmid        MGE length: 160923 bp
Accession: NZ_CP123241        Location: 1..160923         Organism: Escherichia coli strain YZLc1-3       Replicon: plasmid pYZLc1-3_160k


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N4725_RS25235 (1) 1..978 + 978 WP_000361611.1 RepB family plasmid replication initiator protein -
N4725_RS25240 (1263) 1263..2003 - 741 WP_001066954.1 tyrosine-type recombinase/integrase -
N4725_RS25245 (2124) 2124..2312 - 189 WP_001312821.1 hypothetical protein -
N4725_RS25250 (2686) 2686..3588 - 903 WP_001312822.1 hypothetical protein VF
N4725_RS25255 (3657) 3657..4766 - 1110 WP_000771475.1 SDR family oxidoreductase -
N4725_RS25260 (5199) 5199..6152 - 954 WP_000280980.1 Protease 7 VF
N4725_RS25265 (7449) 7449..7628 - 180 Protein_6 integrase core domain-containing protein -
N4725_RS25270 (7767) 7767..8506 + 740 Protein_7 IS3 family transposase IS629 Transposase
N4725_RS25275 (9179) 9179..10687 + 1509 WP_001189111.1 group II intron reverse transcriptase/maturase -
N4725_RS25280 (10771) 10771..11250 + 480 Protein_9 IS3 family transposase IS629 Transposase
N4725_RS25285 (11398) 11398..11666 - 269 Protein_10 IS3 family transposase ISLad1 Transposase
N4725_RS25290 (11723) 11723..12420 + 698 WP_224158172.1 IS1-like element IS1A family transposase -
N4725_RS25295 (12498) 12498..13887 - 1390 Protein_12 ISNCY family transposase ISKpn21 Transposase
N4725_RS25300 (14197) 14197..14346 - 150 Protein_13 IS3 family transposase IS2 Transposase
N4725_RS25305 (14524) 14524..15717 - 1194 WP_000450494.1 GTP-binding protein -
N4725_RS25310 (16940) 16940..18176 - 1237 Protein_15 IS3 family transposase IS2 Transposase
N4725_RS25315 (18803) 18803..19096 + 294 WP_000738422.1 increased serum survival lipoprotein Iss -
N4725_RS25320 (19154) 19154..19353 - 200 Protein_17 lysis protein -
N4725_RS25325 (19907) 19907..20936 + 1030 Protein_18 IS481 family transposase ISKpn28 Transposase
N4725_RS25330 (22247) 22247..23362 + 1116 WP_001318220.1 Elloramycin glycosyltransferase ElmGT VF
N4725_RS25335 (23502) 23502..27161 + 3660 WP_001111199.1 Multidrug efflux ATP-binding/permease protein VF
N4725_RS25340 (27265) 27265..28494 + 1230 WP_000933675.1 Enterochelin esterase VF
N4725_RS25345 (28579) 28579..29535 + 957 WP_064055648.1 hypothetical protein VF
N4725_RS25350 (29580) 29580..31757 - 2178 WP_001222186.1 Ferric enterobactin receptor VF
N4725_RS25355 (31992) 31992..32689 + 698 WP_095033700.1 IS1-like element IS1B family transposase -
N4725_RS25360 (32706) 32706..32903 - 198 Protein_25 colicin V -
N4725_RS25365 (32881) 32881..33117 - 237 WP_014640552.1 colicin V immunity protein -
N4725_RS25370 (33659) 33659..33862 - 204 Protein_27 hypothetical protein -
N4725_RS25375 (34035) 34035..34202 + 168 Protein_28 colicin-B -
N4725_RS25380 (34220) 34220..34747 - 528 WP_000203272.1 colicin B immunity protein -
N4725_RS25385 (34991) 34991..35806 + 816 WP_001312845.1 lipid II-degrading bacteriocin colicin M -
N4725_RS25390 (35856) 35856..36209 - 354 WP_000864812.1 colicin M immunity protein -
N4725_RS25395 (36387) 36387..37178 - 792 WP_000016493.1 site-specific integrase -
N4725_RS25400 (37175) 37175..37864 - 690 WP_000796228.1 hypothetical protein -
N4725_RS25405 (37908) 37908..38258 - 351 WP_000493379.1 hypothetical protein -
N4725_RS25410 (38790) 38790..42605 - 3816 WP_223364258.1 hypothetical protein -
N4725_RS25415 (42831) 42831..43016 + 186 Protein_36 hypothetical protein -
N4725_RS25420 (43034) 43034..43381 - 348 WP_000142450.1 DUF6404 family protein -
N4725_RS25425 (43683) 43683..44165 - 483 WP_001311056.1 hypothetical protein -
N4725_RS25430 (44282) 44282..45130 - 849 WP_023154360.1 3'-5' exonuclease -
N4725_RS25435 (45176) 45176..45454 - 279 WP_097309154.1 type II toxin-antitoxin system toxin YacB -
N4725_RS25440 (45564) 45564..47315 - 1752 Protein_41 Tn3 family transposase TnpA_TnAs1 Transposase
N4725_RS25445 (47319) 47319..47711 + 393 WP_001351729.1 isochorismatase family cysteine hydrolase -
N4725_RS25450 (47849) 47849..48733 + 885 WP_000058717.1 EamA family transporter -
N4725_RS25455 (48765) 48765..49964 - 1200 WP_001493765.1 Tetracycline resistance protein, class C ARG
N4725_RS25460 (50070) 50070..50696 + 627 WP_031606906.1 tetracycline resistance transcriptional repressor TetR(A) -
N4725_RS25465 (50728) 50728..50970 - 243 WP_000844627.1 transposase -
N4725_RS25470 (51028) 51028..51744 - 717 Protein_47 Tn3 family transposase TnpA_TnAs1 Transposase
N4725_RS25475 (51778) 51778..53076 - 1299 Protein_48 Tn3 family transposase TnpA_Tn3 Transposase
N4725_RS25480 (53144) 53144..53848 + 705 WP_001067858.1 IS6 family transposase IS15DI Transposase
N4725_RS25485 (54042) 54042..54428 + 387 WP_063102497.1 bleomycin binding protein -
N4725_RS25490 (54748) 54748..55140 - 393 WP_000084745.1 pyridoxamine 5'-phosphate oxidase family protein -
N4725_RS25495 (55475) 55475..56179 - 705 WP_001067858.1 IS6 family transposase IS15DI Transposase
N4725_RS25500 (56243) 56243..56512 - 270 Protein_53 Tn3 family transposase TnpR_TnAs3 Transposase
N4725_RS25505 (56638) 56638..56988 - 351 WP_000454193.1 DUF3330 domain-containing protein -
N4725_RS25510 (57191) 57191..58204 - 1014 WP_000845039.1 IS91 family transposase ISAzo26 Transposase
N4725_RS25515 (58349) 58349..58846 + 498 WP_001083725.1 IS1595 family transposase ISSsu9 ARG
N4725_RS25520 (58958) 58958..59248 + 291 WP_001336345.1 DUF1010 domain-containing protein -
N4725_RS25525 (59254) 59254..60092 + 839 Protein_58 Streptomycin 3''-adenylyltransferase ARG
N4725_RS25530 (60209) 60209..60556 + 348 WP_000679427.1 Multidrug transporter EmrE ARG
N4725_RS25535 (60550) 60550..60882 + 333 Protein_60 IS6 family transposase IS15 Transposase
N4725_RS25540 (60939) 60939..61643 + 705 WP_001067858.1 IS6 family transposase IS15DI Transposase
N4725_RS25545 (61772) 61772..62536 + 765 WP_001389365.1 IS6-like element IS6100 family transposase -
N4725_RS25550 (63029) 63029..63613 - 585 WP_001137892.1 macrolide-binding transcriptional repressor MphR(A) -
N4725_RS25555 (63613) 63613..64851 - 1239 WP_000004159.1 macrolide resistance MFS transporter Mrx(A) -
N4725_RS25560 (64848) 64848..65753 - 906 WP_000219391.1 hypothetical protein ARG
N4725_RS25565 (65875) 65875..66579 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
N4725_RS25570 (66730) 66730..67545 + 816 WP_000018329.1 Aminoglycoside 3'-phosphotransferase ARG
N4725_RS25575 (67735) 67735..68439 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
N4725_RS25580 (68504) 68504..69754 - 1251 Protein_69 transposase -
N4725_RS25585 (69829) 69829..69912 - 84 Protein_70 hypothetical protein -
N4725_RS25590 (70027) 70027..70185 + 159 Protein_71 chromate resistance protein -
N4725_RS25595 (70813) 70813..72184 - 1372 Protein_72 IS1182 family transposase ISCfr1 Transposase
N4725_RS25600 (72299) 72299..73435 - 1137 WP_000080860.1 DUF3883 domain-containing protein -
N4725_RS25605 (73486) 73486..73713 - 228 WP_181726438.1 hypothetical protein -
N4725_RS25610 (73737) 73737..73928 + 192 WP_000951934.1 hypothetical protein -
N4725_RS25615 (74410) 74410..74952 - 543 WP_000587837.1 AAA family ATPase -
N4725_RS25620 (74965) 74965..75825 - 861 WP_000557454.1 SPbeta prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD ARG
N4725_RS25625 (75968) 75968..76873 + 906 Protein_78 IS4 family transposase IS10R Transposase
N4725_RS25630 (76922) 76922..77626 - 705 WP_001067858.1 IS6 family transposase IS15DI Transposase
N4725_RS25635 (77979) 77979..79646 + 1668 WP_012372796.1 group II intron reverse transcriptase/maturase -
N4725_RS25640 (79960) 79960..80151 - 192 WP_001027493.1 hypothetical protein -
N4725_RS25645 (80148) 80148..80570 - 423 WP_000271762.1 DUF1380 family protein -
N4725_RS25650 (80617) 80617..81042 - 426 WP_001198928.1 antirestriction protein -
N4725_RS25655 (81460) 81460..82236 - 777 WP_001383963.1 hypothetical protein -
N4725_RS25660 (82287) 82287..82721 - 435 WP_000274503.1 DUF1380 family protein -
N4725_RS25665 (82735) 82735..82956 - 222 WP_001104881.1 hypothetical protein -
N4725_RS25670 (82957) 82957..83640 - 684 WP_000085883.1 DNA methylase -
N4725_RS25675 (83717) 83717..84010 - 294 WP_032146011.1 hypothetical protein -
N4725_RS25680 (84157) 84157..85119 + 963 WP_000959884.1 plasmid segregation protein ParM -
N4725_RS25685 (85122) 85122..85472 + 351 WP_000361389.1 plasmid partitioning/stability family protein -
N4725_RS25690 (85673) 85673..85876 - 204 Protein_91 hypothetical protein -
N4725_RS25695 (86004) 86004..86238 - 235 Protein_92 type II toxin-antitoxin system RelE/ParE family toxin -
N4725_RS25700 (87818) 87818..88522 + 705 WP_001067858.1 IS6 family transposase IS15DI Transposase
N4725_RS25705 (88575) 88575..88727 - 153 Protein_94 IS1380 family transposase -
N4725_RS25710 (88797) 88797..89501 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
N4725_RS25715 (89567) 89567..90112 + 546 Protein_96 Tn3 family transposase TnpA_Tn3 Transposase
N4725_RS25720 (90148) 90148..90563 - 416 Protein_97 IS1-like element IS1B family transposase -
N4725_RS25725 (90812) 90812..91213 - 402 WP_001398199.1 type II toxin-antitoxin system toxin endoribonuclease PemK -
N4725_RS25730 (91146) 91146..91403 - 258 WP_000557619.1 type II toxin-antitoxin system antitoxin PemI -
N4725_RS25735 (91496) 91496..92149 - 654 WP_000616807.1 CPBP family intramembrane metalloprotease -
N4725_RS25740 (92247) 92247..92387 - 141 WP_001333237.1 hypothetical protein -
N4725_RS25745 (93167) 93167..96184 - 3018 WP_004199413.1 Tn3 family transposase TnpA_IS3000 Transposase
N4725_RS25750 (96214) 96214..96390 - 177 WP_284180544.1 RepA leader peptide Tap -
N4725_RS25755 (96354) 96354..96605 + 252 WP_223195197.1 replication protein RepA -
N4725_RS25760 (96622) 96622..96879 - 258 WP_000083845.1 replication regulatory protein RepA -
N4725_RS25765 (97163) 97163..97312 - 150 WP_001312851.1 Hok/Gef family protein Toxin Detail
- (97356) 97356..97417 + 62 NuclAT_1 - Antitoxin Detail
- (97356) 97356..97417 + 62 NuclAT_1 - Antitoxin Detail
- (97356) 97356..97417 + 62 NuclAT_1 - Antitoxin Detail
- (97356) 97356..97417 + 62 NuclAT_1 - Antitoxin Detail
N4725_RS25770 (97673) 97673..97747 - 75 Protein_107 endonuclease -
N4725_RS25775 (97993) 97993..98205 - 213 WP_001299730.1 ANR family transcriptional regulator -
N4725_RS25780 (98341) 98341..98901 - 561 WP_000139315.1 fertility inhibition protein FinO -
N4725_RS25785 (99004) 99004..99864 - 861 WP_000704514.1 Quorum-quenching protein AidA VF
N4725_RS25790 (99923) 99923..100669 - 747 WP_000205749.1 conjugal transfer pilus acetylase TraX -
N4725_RS25795 (100689) 100689..105959 - 5271 WP_000986962.1 Multifunctional conjugation protein TraI Relaxase
N4725_RS25800 (106041) 106041..106268 + 228 WP_000450520.1 toxin-antitoxin system antitoxin VapB Antitoxin Detail
N4725_RS25805 (106268) 106268..106666 + 399 WP_000911313.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
N4725_RS25810 (106675) 106675..108828 - 2154 WP_000009324.1 type IV conjugative transfer system coupling protein TraD -
N4725_RS25815 (109081) 109081..109812 - 732 WP_023565183.1 conjugal transfer complement resistance protein TraT -
N4725_RS25820 (109844) 109844..110341 - 498 WP_000605857.1 entry exclusion protein -
N4725_RS25825 (110357) 110357..113179 - 2823 WP_001007018.1 conjugal transfer mating-pair stabilization protein TraG -
N4725_RS25830 (113176) 113176..114549 - 1374 WP_001517790.1 conjugal transfer pilus assembly protein TraH -
N4725_RS25835 (114549) 114549..114929 - 381 WP_001389370.1 F-type conjugal transfer protein TrbF -
N4725_RS25840 (114916) 114916..115257 - 342 WP_001443031.1 P-type conjugative transfer protein TrbJ -
N4725_RS25845 (115187) 115187..115732 - 546 WP_000059851.1 type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB -
N4725_RS25850 (115719) 115719..116003 - 285 WP_000624109.1 type-F conjugative transfer system pilin chaperone TraQ -
N4725_RS25855 (116084) 116084..116398 + 315 WP_001324103.1 hypothetical protein -
N4725_RS25860 (116400) 116400..116747 - 348 WP_001287910.1 conjugal transfer protein TrbA -
N4725_RS25865 (116763) 116763..117506 - 744 WP_001030393.1 type-F conjugative transfer system pilin assembly protein TraF -
N4725_RS25870 (117499) 117499..117756 - 258 WP_000864318.1 conjugal transfer protein TrbE -
N4725_RS25875 (117783) 117783..119591 - 1809 WP_000821841.1 type-F conjugative transfer system mating-pair stabilization protein TraN -
N4725_RS25880 (119588) 119588..120226 - 639 WP_000777700.1 type-F conjugative transfer system pilin assembly protein TrbC -
N4725_RS25885 (120235) 120235..121227 - 993 WP_000830183.1 conjugal transfer pilus assembly protein TraU -
N4725_RS25890 (121224) 121224..121856 - 633 WP_001203720.1 type-F conjugative transfer system protein TraW -
N4725_RS25895 (121853) 121853..122239 - 387 WP_000099686.1 type-F conjugative transfer system protein TrbI -
N4725_RS25900 (122236) 122236..124863 - 2628 WP_001064245.1 type IV secretion system protein TraC -
N4725_RS25905 (125023) 125023..125244 - 222 WP_001278689.1 conjugal transfer protein TraR -
N4725_RS25910 (125379) 125379..125894 - 516 WP_000809838.1 type IV conjugative transfer system lipoprotein TraV -
N4725_RS25915 (125891) 125891..126142 - 252 WP_001038342.1 conjugal transfer protein TrbG -
N4725_RS25920 (126154) 126154..126351 - 198 WP_001324648.1 conjugal transfer protein TrbD -
N4725_RS25925 (126338) 126338..126928 - 591 WP_001376242.1 conjugal transfer pilus-stabilizing protein TraP -
N4725_RS25930 (126918) 126918..128345 - 1428 WP_000146685.1 F-type conjugal transfer pilus assembly protein TraB -
N4725_RS25935 (128345) 128345..129073 - 729 WP_001230787.1 type-F conjugative transfer system secretin TraK -
N4725_RS25940 (129060) 129060..129626 - 567 WP_000399792.1 type IV conjugative transfer system protein TraE -
N4725_RS25945 (129648) 129648..129959 - 312 WP_000012106.1 type IV conjugative transfer system protein TraL -
N4725_RS25950 (129974) 129974..130339 - 366 WP_000994779.1 type IV conjugative transfer system pilin TraA -
N4725_RS25955 (130372) 130372..130773 - 402 WP_001369361.1 conjugal transfer relaxosome DNA-bindin protein TraY -
N4725_RS25960 (130866) 130866..131555 - 690 WP_000283385.1 conjugal transfer transcriptional regulator TraJ -
N4725_RS25965 (131742) 131742..132125 - 384 WP_001151524.1 conjugal transfer relaxosome DNA-binding protein TraM -
N4725_RS25970 (132458) 132458..133048 + 591 WP_001376243.1 hypothetical protein VF
N4725_RS25975 (133345) 133345..134166 - 822 WP_001234426.1 DUF932 domain-containing protein -
N4725_RS25980 (134284) 134284..134571 - 288 WP_000107535.1 hypothetical protein -
N4725_RS25985 (134596) 134596..134802 - 207 WP_000547968.1 hypothetical protein -
N4725_RS25990 (134872) 134872..135044 + 173 Protein_151 hypothetical protein -
N4725_RS25995 (135042) 135042..135272 - 231 WP_071586998.1 hypothetical protein -
N4725_RS26000 (135492) 135492..135617 - 126 WP_001372321.1 type I toxin-antitoxin system Hok family toxin Toxin Detail
N4725_RS26005 (135559) 135559..135708 - 150 Protein_154 plasmid maintenance protein Mok -
- (135694) 135694..135918 - 225 NuclAT_0 - Antitoxin Detail
- (135694) 135694..135918 - 225 NuclAT_0 - Antitoxin Detail
- (135694) 135694..135918 - 225 NuclAT_0 - Antitoxin Detail
- (135694) 135694..135918 - 225 NuclAT_0 - Antitoxin Detail
N4725_RS26010 (135730) 135730..135918 + 189 WP_001299721.1 hypothetical protein -
N4725_RS26015 (135887) 135887..136649 - 763 Protein_156 plasmid SOS inhibition protein A -
N4725_RS26020 (136646) 136646..137080 - 435 WP_181726437.1 conjugation system SOS inhibitor PsiB -
N4725_RS26025 (137135) 137135..137332 - 198 Protein_158 hypothetical protein -
N4725_RS26030 (137360) 137360..137593 - 234 WP_000005987.1 DUF905 family protein -
N4725_RS26035 (137661) 137661..138200 - 540 WP_000290840.1 single-stranded DNA-binding protein -
N4725_RS26040 (138226) 138226..138432 - 207 WP_000275856.1 hypothetical protein -
N4725_RS26045 (138502) 138502..138582 + 81 Protein_162 hypothetical protein -
N4725_RS26050 (138765) 138765..138934 - 170 Protein_163 hypothetical protein -
N4725_RS26055 (139571) 139571..140542 - 972 WP_000817028.1 ParB/RepB/Spo0J family plasmid partition protein -
N4725_RS26060 (140542) 140542..141708 - 1167 WP_001238646.1 hypothetical protein VF
N4725_RS26070 (143190) 143190..145391 - 2202 WP_000973520.1 Ferric aerobactin receptor VF
N4725_RS26075 (145417) 145417..146750 - 1334 Protein_168 L-lysine N6-monooxygenase VF
N4725_RS26080 (146747) 146747..148489 - 1743 WP_001015721.1 Aerobactin synthase VF
N4725_RS26085 (148489) 148489..149436 - 948 WP_000011910.1 N(6)-hydroxylysine O-acetyltransferase VF
N4725_RS26090 (149437) 149437..151161 - 1725 WP_000602863.1 N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase VF
N4725_RS26095 (151297) 151297..152490 + 1194 WP_000095526.1 MFS transporter -
N4725_RS26100 (152870) 152870..153250 - 381 WP_001318207.1 fluoride efflux transporter CrcB -
N4725_RS26105 (153591) 153591..154004 - 414 Protein_174 phosphopyruvate hydratase -
N4725_RS26110 (154002) 154002..154259 + 258 Protein_175 Tn3 family transposase -
N4725_RS26115 (154493) 154493..155350 - 858 WP_000968139.1 Manganese transport system membrane protein MntB ARG
N4725_RS26120 (155347) 155347..156204 - 858 WP_001101723.1 Manganese transport system membrane protein MntB ARG
N4725_RS26125 (156201) 156201..157028 - 828 WP_000983710.1 Manganese transport system ATP-binding protein MntB VF
N4725_RS26130 (157028) 157028..157942 - 915 WP_000949004.1 putative periplasmic iron-binding protein VF
N4725_RS26135 (158298) 158298..158995 + 698 WP_094096600.1 IS1 family transposase IS1S Transposase
N4725_RS26140 (159175) 159175..159688 - 514 Protein_181 DUF4113 domain-containing protein -
N4725_RS26145 (159749) 159749..159853 - 105 Protein_182 AAA family ATPase -
N4725_RS26150 (159855) 159855..160178 - 324 Protein_183 IS21 family transposase IS21 Transposase

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance