MGE detailed information
MGE type: Conjugative plasmid MGE length: 114815 bp
Accession: NZ_CP123048 Location: 1..114815 Organism: Escherichia coli strain EC0430 Replicon: plasmid pEC0430-2
Accession: NZ_CP123048 Location: 1..114815 Organism: Escherichia coli strain EC0430 Replicon: plasmid pEC0430-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDU34_RS24245 () | 521..1168 | - | 648 | WP_015059008.1 | hypothetical protein | VF |
| QDU34_RS24250 () | 1445..1828 | + | 384 | WP_000124981.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| QDU34_RS24255 () | 2019..2705 | + | 687 | WP_015059009.1 | PAS domain-containing protein | - |
| QDU34_RS24260 () | 2799..3026 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| QDU34_RS24265 () | 3060..3425 | + | 366 | WP_021519752.1 | type IV conjugative transfer system pilin TraA | - |
| QDU34_RS24270 () | 3440..3751 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| QDU34_RS24275 () | 3773..4339 | + | 567 | WP_000399794.1 | type IV conjugative transfer system protein TraE | - |
| QDU34_RS24280 () | 4326..5054 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| QDU34_RS24285 () | 5054..6481 | + | 1428 | WP_032297072.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| QDU34_RS24290 () | 6471..7061 | + | 591 | WP_000002778.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| QDU34_RS24295 () | 7048..7245 | + | 198 | WP_001324648.1 | conjugal transfer protein TrbD | - |
| QDU34_RS24300 () | 7257..7508 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| QDU34_RS24305 () | 7505..8020 | + | 516 | WP_000809902.1 | type IV conjugative transfer system lipoprotein TraV | - |
| QDU34_RS24310 () | 8155..8376 | + | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| QDU34_RS24315 () | 8536..11163 | + | 2628 | WP_015059012.1 | type IV secretion system protein TraC | - |
| QDU34_RS24320 () | 11160..11546 | + | 387 | WP_015059013.1 | type-F conjugative transfer system protein TrbI | - |
| QDU34_RS24325 () | 11543..12175 | + | 633 | WP_001203735.1 | type-F conjugative transfer system protein TraW | - |
| QDU34_RS24330 () | 12172..13164 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| QDU34_RS24335 () | 13191..13499 | + | 309 | WP_000412447.1 | hypothetical protein | - |
| QDU34_RS24340 () | 13562..14083 | + | 522 | WP_015059014.1 | hypothetical protein | - |
| QDU34_RS24345 () | 14110..14748 | + | 639 | WP_000087532.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| QDU34_RS24350 () | 14745..15116 | + | 372 | WP_000056336.1 | hypothetical protein | - |
| QDU34_RS24355 () | 15142..15564 | + | 423 | WP_001229309.1 | HNH endonuclease signature motif containing protein | - |
| QDU34_RS24360 () | 15561..17411 | + | 1851 | WP_015059015.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| QDU34_RS24365 () | 17438..17695 | + | 258 | WP_053913405.1 | conjugal transfer protein TrbE | - |
| QDU34_RS24370 () | 17688..18435 | + | 748 | Protein_25 | type-F conjugative transfer system pilin assembly protein TraF | - |
| QDU34_RS24375 () | 18596..18832 | + | 237 | WP_000270010.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| QDU34_RS24380 () | 18819..19364 | + | 546 | WP_000059817.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| QDU34_RS24385 () | 19354..19668 | + | 315 | WP_001384255.1 | P-type conjugative transfer protein TrbJ | - |
| QDU34_RS24390 () | 19622..20014 | + | 393 | WP_000126338.1 | F-type conjugal transfer protein TrbF | - |
| QDU34_RS24395 () | 20001..21374 | + | 1374 | WP_000944325.1 | conjugal transfer pilus assembly protein TraH | - |
| QDU34_RS24400 () | 21371..24187 | + | 2817 | WP_280102464.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| QDU34_RS24405 () | 24220..24741 | + | 522 | WP_000632668.1 | conjugal transfer entry exclusion protein TraS | - |
| QDU34_RS24410 () | 24766..25497 | + | 732 | WP_021559024.1 | conjugal transfer complement resistance protein TraT | - |
| QDU34_RS24415 () | 25700..26437 | + | 738 | WP_015059020.1 | hypothetical protein | - |
| QDU34_RS24420 () | 26488..28740 | + | 2253 | WP_061093448.1 | type IV conjugative transfer system coupling protein TraD | - |
| QDU34_RS24425 () | 28740..34010 | + | 5271 | WP_280102465.1 | Multifunctional conjugation protein TraI | Relaxase |
| QDU34_RS24430 () | 34030..34776 | + | 747 | WP_000205770.1 | conjugal transfer pilus acetylase TraX | - |
| QDU34_RS24435 () | 34831..35391 | + | 561 | WP_000139328.1 | fertility inhibition protein FinO | - |
| QDU34_RS24440 () | 35523..35723 | + | 201 | WP_015059022.1 | hypothetical protein | - |
| QDU34_RS24445 () | 36109..36708 | + | 600 | WP_032083981.1 | PIN domain-containing protein | - |
| QDU34_RS24450 () | 36770..37102 | + | 333 | WP_152916585.1 | hypothetical protein | - |
| - () | 37303..37362 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 37303..37362 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 37303..37362 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 37303..37362 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| QDU34_RS24455 () | 37407..37556 | + | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| QDU34_RS24460 () | 37840..38088 | + | 249 | WP_000083837.1 | replication regulatory protein RepA | - |
| QDU34_RS24465 () | 38333..38407 | + | 75 | WP_001375168.1 | RepA leader peptide Tap | - |
| QDU34_RS24470 () | 38400..39257 | + | 858 | WP_032495102.1 | incFII family plasmid replication initiator RepA | - |
| QDU34_RS24475 () | 40196..40849 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| QDU34_RS24480 () | 40942..41199 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| QDU34_RS24485 () | 41132..41533 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| QDU34_RS24490 () | 41818..43128 | + | 1311 | WP_001262765.1 | DUF262 domain-containing protein | - |
| QDU34_RS24495 () | 43157..43255 | + | 99 | Protein_50 | IS1 family transposase | - |
| QDU34_RS24500 () | 43405..43491 | - | 87 | Protein_51 | hypothetical protein | - |
| QDU34_RS24505 () | 43555..44259 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| QDU34_RS24510 () | 44324..44554 | + | 231 | Protein_53 | DDE-type integrase/transposase/recombinase | - |
| QDU34_RS24515 () | 44563..45423 | + | 861 | WP_000493383.1 | EamA family transporter | - |
| QDU34_RS24520 () | 45455..46654 | - | 1200 | WP_000804064.1 | tetracycline efflux MFS transporter Tet(A) | - |
| QDU34_RS24525 () | 46760..47410 | + | 651 | WP_038989485.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| QDU34_RS24530 () | 47442..47678 | - | 237 | WP_042005022.1 | hypothetical protein | - |
| QDU34_RS24535 () | 47732..48568 | - | 837 | WP_000480972.1 | hypothetical protein | ARG |
| QDU34_RS24540 () | 48568..49371 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| QDU34_RS24545 () | 49432..50247 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| QDU34_RS24550 () | 50555..50731 | - | 177 | Protein_61 | replication protein C, IncQ-type | - |
| QDU34_RS24555 () | 50792..51496 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| QDU34_RS24560 () | 51618..52523 | + | 906 | WP_000219391.1 | hypothetical protein | ARG |
| QDU34_RS24565 () | 52520..53758 | + | 1239 | WP_000004159.1 | macrolide resistance MFS transporter Mrx(A) | - |
| QDU34_RS24570 () | 53758..54342 | + | 585 | WP_001137892.1 | macrolide-binding transcriptional repressor MphR(A) | - |
| QDU34_RS24575 () | 54835..55599 | - | 765 | WP_001389365.1 | IS6-like element IS6100 family transposase | - |
| QDU34_RS24580 () | 55717..55782 | - | 66 | Protein_67 | EAL domain-containing protein | - |
| QDU34_RS24585 () | 55802..56152 | - | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| QDU34_RS24590 () | 56355..57368 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| QDU34_RS24595 () | 57526..57999 | + | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| QDU34_RS24600 () | 58130..58918 | + | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| QDU34_RS24605 () | 59124..59471 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| QDU34_RS24610 () | 59465..60304 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| QDU34_RS24615 () | 60432..60635 | + | 204 | WP_000376616.1 | hypothetical protein | - |
| QDU34_RS24620 () | 60765..61469 | - | 705 | WP_073520228.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| QDU34_RS24625 () | 61533..61943 | + | 411 | Protein_76 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| QDU34_RS24630 () | 61946..64897 | + | 2952 | WP_015344976.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| QDU34_RS24635 () | 64831..65322 | + | 492 | WP_000068661.1 | hypothetical protein | - |
| QDU34_RS24640 () | 65799..66065 | - | 267 | WP_000627831.1 | hypothetical protein | - |
| QDU34_RS24645 () | 66065..66559 | - | 495 | WP_001442119.1 | hypothetical protein | - |
| QDU34_RS24650 () | 66615..67217 | - | 603 | WP_000517689.1 | ProQ/FINO family protein | - |
| QDU34_RS24655 () | 67571..68917 | + | 1347 | WP_001132019.1 | protein YagA | - |
| QDU34_RS24660 () | 69196..71076 | + | 1881 | WP_001283356.1 | colicin Ia central receptor-binding domain-containing protein | - |
| QDU34_RS24665 () | 71094..71441 | - | 348 | WP_000762580.1 | colicin E1 family microcin immunity protein | - |
| QDU34_RS24670 () | 71560..71907 | + | 348 | WP_000142424.1 | DUF6404 family protein | - |
| QDU34_RS24675 () | 71925..72515 | - | 591 | WP_000194555.1 | hypothetical protein | - |
| QDU34_RS24680 () | 72512..72772 | - | 261 | WP_000343102.1 | hypothetical protein | - |
| QDU34_RS24685 () | 73101..73553 | + | 453 | WP_000670961.1 | dTDP-3-amino-3,6-dideoxy-alpha-D-galactopyranose 3-N-acetyltransferase | VF |
| QDU34_RS24690 () | 73586..75118 | - | 1533 | WP_001017348.1 | NAD(P)-binding domain-containing protein | - |
| QDU34_RS24695 () | 75115..75384 | - | 270 | WP_000379710.1 | SemiSWEET transporter | - |
| QDU34_RS24700 () | 75386..76402 | - | 1017 | WP_016230896.1 | Gfo/Idh/MocA family oxidoreductase | - |
| QDU34_RS24705 () | 76402..77232 | - | 831 | WP_016230897.1 | HAD-IIB family hydrolase | - |
| QDU34_RS24710 () | 77216..78454 | - | 1239 | WP_024188128.1 | 3-oxo-glucose-6-phosphate:glutamate aminotransferase | VF |
| QDU34_RS24715 () | 79299..79517 | + | 219 | WP_000813630.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| QDU34_RS24720 () | 79519..79824 | + | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| QDU34_RS24725 () | 79825..80634 | + | 810 | WP_280102452.1 | site-specific integrase | - |
| QDU34_RS24730 () | 80807..81160 | + | 354 | WP_000864812.1 | colicin M immunity protein | - |
| QDU34_RS24735 () | 81210..82025 | - | 816 | WP_000449473.1 | lipid II-degrading bacteriocin colicin M | - |
| QDU34_RS24740 () | 82268..82795 | + | 528 | WP_000203268.1 | colicin B immunity protein | - |
| QDU34_RS24745 () | 82813..84348 | - | 1536 | WP_001282376.1 | pore-forming bacteriocin colicin B | - |
| QDU34_RS24750 () | 84789..85301 | + | 513 | WP_001027529.1 | hypothetical protein | - |
| QDU34_RS24755 () | 85452..85802 | - | 351 | WP_000361384.1 | plasmid partitioning/stability family protein | - |
| QDU34_RS24760 () | 85805..86767 | - | 963 | WP_000959880.1 | plasmid segregation protein ParM | - |
| QDU34_RS24765 () | 86915..87208 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| QDU34_RS24770 () | 87285..87968 | + | 684 | WP_021514796.1 | DNA methylase | - |
| QDU34_RS24775 () | 87969..88190 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| QDU34_RS24780 () | 88120..88638 | + | 519 | WP_223174655.1 | DUF1380 family protein | - |
| QDU34_RS24785 () | 88683..89453 | + | 771 | WP_001006200.1 | hypothetical protein | - |
| QDU34_RS24790 () | 89527..90639 | + | 1113 | WP_001300563.1 | IS4 family transposase IS421 | Transposase |
| QDU34_RS24795 () | 91215..91640 | + | 426 | WP_021514795.1 | antirestriction protein | - |
| QDU34_RS24800 () | 91687..92109 | + | 423 | WP_000271682.1 | DUF1380 family protein | - |
| QDU34_RS24805 () | 92106..92297 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| QDU34_RS24810 () | 92663..92818 | - | 156 | Protein_113 | hypothetical protein | - |
| QDU34_RS24815 () | 93336..93566 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| QDU34_RS24820 () | 93618..94979 | + | 1362 | WP_000170702.1 | DUF3560 domain-containing protein | - |
| QDU34_RS24825 () | 95027..95590 | + | 564 | WP_001330829.1 | class I SAM-dependent methyltransferase | - |
| QDU34_RS24830 () | 95587..95805 | + | 219 | WP_071588970.1 | hypothetical protein | - |
| QDU34_RS24835 () | 95742..95975 | + | 234 | WP_071588969.1 | hypothetical protein | - |
| QDU34_RS24840 () | 96216..96422 | + | 207 | WP_000547971.1 | hypothetical protein | - |
| QDU34_RS24845 () | 96448..96987 | + | 540 | WP_009426937.1 | single-stranded DNA-binding protein | - |
| QDU34_RS24850 () | 97146..98393 | + | 1248 | WP_000654660.1 | site-specific integrase | - |
| QDU34_RS24855 () | 98380..99942 | + | 1563 | WP_000989035.1 | site-specific integrase | - |
| QDU34_RS24860 () | 99935..101668 | + | 1734 | WP_280102453.1 | integrase | - |
| QDU34_RS24865 () | 101665..101922 | + | 258 | WP_280102454.1 | hypothetical protein | - |
| QDU34_RS24870 () | 102116..102382 | + | 267 | WP_280102455.1 | hypothetical protein | - |
| QDU34_RS24875 () | 102450..102725 | + | 276 | WP_280102456.1 | hypothetical protein | - |
| QDU34_RS24880 () | 103184..103354 | + | 171 | WP_280102466.1 | hypothetical protein | - |
| QDU34_RS24885 () | 103409..103744 | + | 336 | WP_280102457.1 | hypothetical protein | - |
| QDU34_RS24890 () | 104297..104614 | + | 318 | WP_280102458.1 | hypothetical protein | - |
| QDU34_RS24895 () | 105101..105502 | + | 402 | WP_280102459.1 | hypothetical protein | - |
| QDU34_RS24900 () | 105592..105846 | + | 255 | WP_280102460.1 | hypothetical protein | - |
| QDU34_RS24905 () | 106198..106941 | + | 744 | WP_280102461.1 | hypothetical protein | - |
| QDU34_RS24910 () | 108188..108373 | - | 186 | WP_280102462.1 | abortive infection system antitoxin AbiGi family protein | - |
| QDU34_RS24915 () | 108925..109158 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| QDU34_RS24920 () | 109219..111242 | + | 2024 | Protein_135 | ParB/RepB/Spo0J family partition protein | - |
| QDU34_RS24925 () | 111311..111745 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| QDU34_RS24930 () | 111742..112504 | + | 763 | Protein_137 | plasmid SOS inhibition protein A | - |
| - () | 112473..112697 | + | 225 | NuclAT_0 | - | - |
| - () | 112473..112697 | + | 225 | NuclAT_0 | - | - |
| - () | 112473..112697 | + | 225 | NuclAT_0 | - | - |
| - () | 112473..112697 | + | 225 | NuclAT_0 | - | - |
| QDU34_RS24935 () | 112482..112661 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| - | 112630..112695 | - | 66 | - | - | Antitoxin Detail |
| QDU34_RS24940 () | 112683..112832 | + | 150 | Protein_139 | plasmid maintenance protein Mok | - |
| QDU34_RS24945 () | 112774..112899 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| QDU34_RS24950 () | 113218..113514 | - | 297 | Protein_141 | hypothetical protein | - |
| QDU34_RS24955 () | 113814..114110 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| QDU34_RS24960 () | 114294..114617 | + | 324 | WP_280102463.1 | DUF932 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|