MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP122319 Location: 3847851..3869525 Organism: Escherichia coli strain BW25113 Replicon: chromosome
Accession: NZ_CP122319 Location: 3847851..3869525 Organism: Escherichia coli strain BW25113 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCG47_RS18645 (3843840) | 3843840..3843887 | + | 48 | WP_211180494.1 | protein YnaN | - |
| QCG47_RS18650 (3843901) | 3843901..3844884 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| QCG47_RS18655 (3845159) | 3845159..3845332 | + | 174 | WP_001296046.1 | protein YnaL | - |
| QCG47_RS18660 (3845362) | 3845362..3846735 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| QCG47_RS18665 (3846864) | 3846864..3847799 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| QCG47_RS18670 (3847851) | 3847851..3849086 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| QCG47_RS18675 (3849088) | 3849088..3849303 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| - (3849407) | 3849407..3849585 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (3849407) | 3849407..3849585 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (3849407) | 3849407..3849585 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (3849407) | 3849407..3849585 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| QCG47_RS18680 (3849382) | 3849382..3849591 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| QCG47_RS18685 (3849584) | 3849584..3849778 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| QCG47_RS18690 (3849835) | 3849835..3850644 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| QCG47_RS18695 (3850637) | 3850637..3853237 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| QCG47_RS18700 (3853339) | 3853339..3853614 | - | 276 | WP_000632297.1 | protein RacC | - |
| QCG47_RS18705 (3853689) | 3853689..3853859 | - | 171 | WP_001352098.1 | YdaE family protein | - |
| QCG47_RS18710 (3853859) | 3853859..3854080 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| QCG47_RS18715 (3854522) | 3854522..3855010 | + | 489 | WP_001312793.1 | superinfection exclusion B family protein | - |
| QCG47_RS18720 (3855007) | 3855007..3855162 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| QCG47_RS18725 (3855173) | 3855173..3855307 | - | 135 | WP_000233809.1 | phage protein | - |
| QCG47_RS18730 (3855616) | 3855616..3856092 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| QCG47_RS18735 (3856216) | 3856216..3856512 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| QCG47_RS18740 (3856535) | 3856535..3856957 | + | 423 | WP_000693797.1 | toxin YdaT family protein | - |
| QCG47_RS18745 (3856970) | 3856970..3857827 | + | 858 | WP_000899748.1 | YdaU family protein | - |
| QCG47_RS18750 (3857834) | 3857834..3858580 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| QCG47_RS18755 (3858603) | 3858603..3859055 | + | 453 | Protein_3639 | DUF1627 domain-containing protein | - |
| QCG47_RS18760 (3859251) | 3859251..3859436 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| QCG47_RS18765 (3859633) | 3859633..3861090 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| QCG47_RS18770 (3861228) | 3861228..3861491 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| QCG47_RS18775 (3861472) | 3861472..3861831 | + | 360 | WP_000091628.1 | protein YdaY | - |
| QCG47_RS18780 (3862305) | 3862305..3863237 | + | 933 | Protein_3644 | phage tail length tape measure family protein | - |
| QCG47_RS18785 (3863240) | 3863240..3863455 | + | 216 | Protein_3645 | Ail/Lom family outer membrane beta-barrel protein | - |
| QCG47_RS18790 (3863597) | 3863597..3864577 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| QCG47_RS18795 (3864647) | 3864647..3864835 | + | 189 | Protein_3647 | Ail/Lom family outer membrane beta-barrel protein | - |
| QCG47_RS18800 (3864900) | 3864900..3868262 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| QCG47_RS18805 (3868262) | 3868262..3868837 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| QCG47_RS18810 (3868935) | 3868935..3869525 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| QCG47_RS18815 (3869842) | 3869842..3870075 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| QCG47_RS18820 (3870144) | 3870144..3870257 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| QCG47_RS18825 (3871036) | 3871036..3871470 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| QCG47_RS18830 (3871611) | 3871611..3872744 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |