MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP122317 Location: 4549295..4570969 Organism: Escherichia coli strain HT-948 Replicon: chromosome
Accession: NZ_CP122317 Location: 4549295..4570969 Organism: Escherichia coli strain HT-948 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCG49_RS22200 (4545284) | 4545284..4545331 | + | 48 | WP_211180494.1 | protein YnaN | - |
| QCG49_RS22205 (4545345) | 4545345..4546328 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| QCG49_RS22210 (4546603) | 4546603..4546776 | + | 174 | WP_001296046.1 | protein YnaL | - |
| QCG49_RS22215 (4546806) | 4546806..4548179 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| QCG49_RS22220 (4548308) | 4548308..4549243 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| QCG49_RS22225 (4549295) | 4549295..4550530 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| QCG49_RS22230 (4550532) | 4550532..4550747 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| - (4550851) | 4550851..4551029 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (4550851) | 4550851..4551029 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (4550851) | 4550851..4551029 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (4550851) | 4550851..4551029 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| QCG49_RS22235 (4550826) | 4550826..4551035 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| QCG49_RS22240 (4551028) | 4551028..4551222 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| QCG49_RS22245 (4551279) | 4551279..4552088 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| QCG49_RS22250 (4552081) | 4552081..4554681 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| QCG49_RS22255 (4554783) | 4554783..4555058 | - | 276 | WP_000632297.1 | protein RacC | - |
| QCG49_RS22260 (4555133) | 4555133..4555303 | - | 171 | WP_001352098.1 | YdaE family protein | - |
| QCG49_RS22265 (4555303) | 4555303..4555524 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| QCG49_RS22270 (4555966) | 4555966..4556454 | + | 489 | WP_001312793.1 | superinfection exclusion B family protein | - |
| QCG49_RS22275 (4556451) | 4556451..4556606 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| QCG49_RS22280 (4556617) | 4556617..4556751 | - | 135 | WP_000233809.1 | phage protein | - |
| QCG49_RS22285 (4557060) | 4557060..4557536 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| QCG49_RS22290 (4557660) | 4557660..4557956 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| QCG49_RS22295 (4557979) | 4557979..4558401 | + | 423 | WP_000693797.1 | toxin YdaT family protein | - |
| QCG49_RS22300 (4558414) | 4558414..4559271 | + | 858 | WP_000899748.1 | YdaU family protein | - |
| QCG49_RS22305 (4559278) | 4559278..4560024 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| QCG49_RS22310 (4560047) | 4560047..4560499 | + | 453 | Protein_4339 | DUF1627 domain-containing protein | - |
| QCG49_RS22315 (4560695) | 4560695..4560880 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| QCG49_RS22320 (4561077) | 4561077..4562534 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| QCG49_RS22325 (4562672) | 4562672..4562935 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| QCG49_RS22330 (4562916) | 4562916..4563275 | + | 360 | WP_000091628.1 | protein YdaY | - |
| QCG49_RS22335 (4563749) | 4563749..4564681 | + | 933 | Protein_4344 | phage tail length tape measure family protein | - |
| QCG49_RS22340 (4564684) | 4564684..4564899 | + | 216 | Protein_4345 | Ail/Lom family outer membrane beta-barrel protein | - |
| QCG49_RS22345 (4565041) | 4565041..4566021 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| QCG49_RS22350 (4566091) | 4566091..4566279 | + | 189 | Protein_4347 | Ail/Lom family outer membrane beta-barrel protein | - |
| QCG49_RS22355 (4566344) | 4566344..4569706 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| QCG49_RS22360 (4569706) | 4569706..4570281 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| QCG49_RS22365 (4570379) | 4570379..4570969 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| QCG49_RS22370 (4571286) | 4571286..4571519 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| QCG49_RS22375 (4571588) | 4571588..4571701 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| QCG49_RS22380 (4572480) | 4572480..4572914 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| QCG49_RS22385 (4573055) | 4573055..4574188 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |