MGE detailed information
MGE type: Conjugative plasmid MGE length: 110945 bp
Accession: NZ_CP117669 Location: 1..110945 Organism: Escherichia albertii strain BIA_11 Replicon: plasmid pEA11_1
Accession: NZ_CP117669 Location: 1..110945 Organism: Escherichia albertii strain BIA_11 Replicon: plasmid pEA11_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS054_RS23585 (1) | 1..978 | + | 978 | WP_059278929.1 | RepB family plasmid replication initiator protein | - |
| PS054_RS23590 (1263) | 1263..2003 | - | 741 | WP_032151901.1 | tyrosine-type recombinase/integrase | - |
| PS054_RS23595 (2398) | 2398..3428 | + | 1031 | Protein_2 | transposase | - |
| PS054_RS23600 (3601) | 3601..4256 | + | 656 | Protein_3 | IS1 family transposase | - |
| PS054_RS23605 (4281) | 4281..4586 | - | 306 | WP_273815672.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| PS054_RS23610 (4733) | 4733..5158 | - | 426 | WP_273815674.1 | hypothetical protein | VF |
| PS054_RS23615 (5536) | 5536..5801 | - | 266 | Protein_6 | transposase | - |
| PS054_RS23620 (5808) | 5808..6176 | + | 369 | Protein_7 | transposase | - |
| PS054_RS23625 (6184) | 6184..6486 | - | 303 | Protein_8 | IS3 family transposase ISLad1 | Transposase |
| PS054_RS23630 (6509) | 6509..7585 | - | 1077 | WP_273815676.1 | IS110 family transposase ISEc21 | Transposase |
| PS054_RS23635 (7867) | 7867..8727 | - | 861 | Protein_10 | IS3 family transposase | - |
| PS054_RS23640 (9362) | 9362..9964 | + | 603 | Protein_11 | S6 family peptidase | - |
| PS054_RS23645 (10038) | 10038..11088 | + | 1051 | Protein_12 | IS3 family transposase | - |
| PS054_RS23650 (11296) | 11296..12642 | + | 1347 | Protein_13 | S6 family peptidase | - |
| PS054_RS23655 (13009) | 13009..13587 | + | 579 | WP_273815678.1 | hypothetical protein | VF |
| PS054_RS23660 (13667) | 13667..13787 | - | 121 | Protein_15 | proQ/FINO family protein | - |
| PS054_RS23665 (14090) | 14090..14554 | - | 465 | Protein_16 | IS481 family transposase ISErsp1 | Transposase |
| PS054_RS23670 (14576) | 14576..14695 | - | 120 | Protein_17 | IS256 family transposase | - |
| PS054_RS23675 (15532) | 15532..20517 | + | 4986 | WP_273815680.1 | hypothetical protein | VF |
| PS054_RS23680 (20638) | 20638..20772 | + | 135 | Protein_19 | IS3 family transposase ISSen1 | Transposase |
| PS054_RS23685 (21168) | 21168..22376 | - | 1209 | WP_273815682.1 | hypothetical protein | - |
| PS054_RS23690 (22413) | 22413..22934 | - | 522 | WP_273815684.1 | fimbrial protein | - |
| PS054_RS23695 (22997) | 22997..23683 | - | 687 | WP_273815686.1 | molecular chaperone | - |
| PS054_RS23700 (23674) | 23674..26181 | - | 2508 | WP_273815688.1 | putative outer membrane usher protein ElfC | VF |
| PS054_RS23705 (26210) | 26210..26650 | - | 441 | WP_273815690.1 | fimbria/pilus periplasmic chaperone | - |
| PS054_RS23710 (26631) | 26631..27335 | - | 705 | WP_273815691.1 | molecular chaperone | - |
| PS054_RS23715 (27408) | 27408..28004 | - | 597 | WP_273815693.1 | Type-1 fimbrial protein, A chain | VF |
| PS054_RS23720 (28453) | 28453..29517 | + | 1065 | Protein_27 | IS3 family transposase | - |
| PS054_RS23725 (29522) | 29522..29874 | - | 353 | Protein_28 | RepB family plasmid replication initiator protein | - |
| PS054_RS23730 (30966) | 30966..32132 | + | 1167 | WP_054412873.1 | plasmid-partitioning protein SopA | - |
| PS054_RS23735 (32132) | 32132..33103 | + | 972 | WP_059276357.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| PS054_RS23740 (33627) | 33627..33878 | + | 252 | WP_001132891.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| PS054_RS23745 (33875) | 33875..34162 | + | 288 | WP_000222759.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PS054_RS23750 (34298) | 34298..35208 | + | 911 | Protein_33 | transposase | - |
| PS054_RS23755 (35510) | 35510..36223 | - | 714 | WP_273815696.1 | molecular chaperone | - |
| PS054_RS23760 (36220) | 36220..37548 | - | 1329 | WP_273815697.1 | fimbrial protein | - |
| PS054_RS23765 (37545) | 37545..40136 | - | 2592 | WP_273815699.1 | Outer membrane usher protein FimD | VF |
| PS054_RS23770 (40087) | 40087..40815 | - | 729 | WP_273815702.1 | putative fimbrial chaperone YadV | VF |
| PS054_RS23775 (40869) | 40869..41417 | - | 549 | WP_059222180.1 | S-fimbrial protein subunit SfaA | VF |
| PS054_RS23780 (42494) | 42494..42708 | - | 215 | Protein_39 | S24 family peptidase | - |
| PS054_RS23785 (42689) | 42689..43042 | + | 354 | Protein_40 | hypothetical protein | - |
| PS054_RS23790 (43128) | 43128..43277 | + | 150 | Protein_41 | conjugation system SOS inhibitor PsiB family protein | - |
| PS054_RS23795 (43311) | 43311..43842 | + | 532 | Protein_42 | plasmid SOS inhibition protein A | - |
| PS054_RS23800 (43839) | 43839..44153 | + | 315 | WP_273815704.1 | theronine dehydrogenase | - |
| - (44102) | 44102..44300 | + | 199 | NuclAT_0 | - | - |
| - (44102) | 44102..44300 | + | 199 | NuclAT_0 | - | - |
| - (44102) | 44102..44300 | + | 199 | NuclAT_0 | - | - |
| - (44102) | 44102..44300 | + | 199 | NuclAT_0 | - | - |
| PS054_RS23805 (44307) | 44307..44456 | + | 150 | Protein_44 | plasmid maintenance protein Mok | - |
| PS054_RS23810 (44398) | 44398..44523 | + | 126 | WP_089521964.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| PS054_RS23815 (44815) | 44815..45036 | + | 222 | Protein_46 | hypothetical protein | - |
| PS054_RS23820 (45141) | 45141..45962 | + | 822 | WP_273815709.1 | DUF932 domain-containing protein | - |
| PS054_RS23825 (46259) | 46259..46792 | - | 534 | WP_273815711.1 | hypothetical protein | VF |
| PS054_RS23830 (47186) | 47186..47569 | + | 384 | WP_273815714.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| PS054_RS23835 (47764) | 47764..48450 | + | 687 | WP_273815716.1 | PAS domain-containing protein | - |
| PS054_RS23840 (48540) | 48540..48767 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| PS054_RS23845 (48801) | 48801..49160 | + | 360 | WP_273815718.1 | type IV conjugative transfer system pilin TraA | - |
| PS054_RS23850 (49175) | 49175..49486 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| PS054_RS23855 (49508) | 49508..50074 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| PS054_RS23860 (50061) | 50061..50789 | + | 729 | WP_273815720.1 | type-F conjugative transfer system secretin TraK | - |
| PS054_RS23865 (50789) | 50789..52216 | + | 1428 | WP_273815723.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| PS054_RS23870 (52206) | 52206..52796 | + | 591 | WP_273815725.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| PS054_RS23875 (52783) | 52783..53103 | + | 321 | WP_273815727.1 | conjugal transfer protein TrbD | - |
| PS054_RS23880 (53096) | 53096..53347 | + | 252 | WP_273815728.1 | conjugal transfer protein TrbG | - |
| PS054_RS23885 (53344) | 53344..53859 | + | 516 | WP_273815730.1 | type IV conjugative transfer system lipoprotein TraV | - |
| PS054_RS23890 (53994) | 53994..54215 | + | 222 | WP_213852945.1 | conjugal transfer protein TraR | - |
| PS054_RS23895 (54543) | 54543..54590 | + | 48 | Protein_62 | hypothetical protein | - |
| PS054_RS23900 (54639) | 54639..55577 | + | 939 | Protein_63 | type IV secretion system DNA-binding domain-containing protein | - |
| PS054_RS23905 (55519) | 55519..55917 | - | 399 | WP_273815637.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PS054_RS23910 (55917) | 55917..56144 | - | 228 | WP_000450526.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| PS054_RS23915 (56226) | 56226..61495 | + | 5270 | Protein_66 | Multifunctional conjugation protein TraI | Relaxase |
| PS054_RS23920 (61515) | 61515..62261 | + | 747 | WP_273815638.1 | conjugal transfer pilus acetylase TraX | - |
| PS054_RS23925 (62316) | 62316..62882 | + | 567 | WP_273815640.1 | fertility inhibition protein FinO | - |
| PS054_RS23930 (63023) | 63023..63235 | + | 213 | WP_273815642.1 | hypothetical protein | - |
| - (63803) | 63803..63864 | - | 62 | NuclAT_1 | - | - |
| - (63803) | 63803..63864 | - | 62 | NuclAT_1 | - | - |
| - (63803) | 63803..63864 | - | 62 | NuclAT_1 | - | - |
| - (63803) | 63803..63864 | - | 62 | NuclAT_1 | - | - |
| PS054_RS23935 (63908) | 63908..64006 | + | 99 | Protein_70 | Hok/Gef family protein | - |
| PS054_RS23940 (64341) | 64341..64598 | + | 258 | WP_273815644.1 | replication regulatory protein RepA | - |
| PS054_RS23945 (64830) | 64830..64904 | + | 75 | WP_001367777.1 | RepA leader peptide Tap | - |
| PS054_RS23950 (64897) | 64897..65430 | + | 534 | WP_273815646.1 | plasmid replication initiator RepA | - |
| PS054_RS23955 (65420) | 65420..66442 | + | 1023 | WP_273815648.1 | plasmid replication initiator RepA | - |
| PS054_RS23960 (67455) | 67455..67523 | - | 69 | Protein_75 | hypothetical protein | - |
| PS054_RS23965 (68224) | 68224..68566 | + | 343 | Protein_76 | type II toxin-antitoxin system antitoxin, RelB/DinJ family | - |
| PS054_RS23970 (68917) | 68917..69822 | + | 906 | Protein_77 | transposase | - |
| PS054_RS23975 (69833) | 69833..70084 | - | 252 | Protein_78 | IS21 family transposase IS21 | Transposase |
| PS054_RS23980 (70854) | 70854..78623 | + | 7770 | WP_273815650.1 | hypothetical protein | VF |
| PS054_RS23985 (78699) | 78699..79402 | + | 704 | Protein_80 | IS3 family transposase ISEc27 | Transposase |
| PS054_RS23990 (80091) | 80091..80462 | + | 372 | Protein_81 | IS200/IS605 family transposase | - |
| PS054_RS23995 (80632) | 80632..81117 | - | 486 | WP_059217921.1 | heme-binding protein | - |
| PS054_RS24000 (81706) | 81706..81813 | + | 108 | WP_273815733.1 | IS256 family transposase ISSod4 | Transposase |
| PS054_RS24005 (82011) | 82011..82157 | - | 147 | Protein_84 | IS256 family transposase ISSod4 | Transposase |
| PS054_RS24010 (82393) | 82393..83340 | - | 948 | WP_273815652.1 | VirK/YbjX family protein | - |
| PS054_RS24015 (83972) | 83972..84910 | - | 939 | WP_273815654.1 | Lipid A biosynthesis myristoyltransferase | VF |
| PS054_RS24020 (85070) | 85070..86176 | - | 1107 | WP_273815736.1 | glycosyltransferase | - |
| PS054_RS24025 (86176) | 86176..86997 | - | 822 | WP_273815656.1 | polysaccharide deacetylase family protein | - |
| PS054_RS24030 (87585) | 87585..87695 | - | 111 | Protein_89 | transcriptional regulator | - |
| PS054_RS24035 (87698) | 87698..87979 | - | 282 | Protein_90 | IS200/IS605 family transposase | - |
| PS054_RS24040 (88152) | 88152..89236 | - | 1085 | Protein_91 | IS481 family transposase ISKpn28 | Transposase |
| PS054_RS24045 (89251) | 89251..89516 | - | 266 | Protein_92 | hypothetical protein | - |
| PS054_RS24050 (90452) | 90452..91132 | + | 681 | Protein_93 | ABC transporter permease | - |
| PS054_RS24055 (92376) | 92376..93176 | + | 801 | WP_273815658.1 | Virulence regulon transcriptional activator VirF | VF |
| PS054_RS24060 (93455) | 93455..93718 | - | 264 | Protein_95 | IS3 family transposase | - |
| PS054_RS24065 (93982) | 93982..94104 | - | 123 | WP_273815660.1 | hypothetical protein | - |
| PS054_RS24070 (94346) | 94346..94489 | + | 144 | WP_273815737.1 | hypothetical protein | - |
| PS054_RS24075 (94594) | 94594..95623 | + | 1030 | Protein_98 | IS481 family transposase ISErsp1 | Transposase |
| PS054_RS24080 (95925) | 95925..96722 | - | 798 | Protein_99 | IS21 family transposase IS21 | Transposase |
| PS054_RS24085 (97094) | 97094..97666 | + | 573 | WP_273815662.1 | hypothetical protein | - |
| PS054_RS24090 (98305) | 98305..99525 | + | 1221 | WP_273815663.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| PS054_RS24095 (99525) | 99525..101648 | + | 2124 | WP_273815665.1 | peptidase domain-containing ABC transporter | - |
| PS054_RS24100 (102861) | 102861..103112 | - | 252 | Protein_103 | IS110 family transposase ISEc21 | Transposase |
| PS054_RS24105 (103394) | 103394..104254 | - | 861 | Protein_104 | IS3 family transposase | - |
| PS054_RS24110 (104329) | 104329..104478 | + | 150 | Protein_105 | protein RepA | - |
| PS054_RS24115 (104456) | 104456..105270 | - | 815 | Protein_106 | DDE-type integrase/transposase/recombinase | - |
| PS054_RS24120 (105691) | 105691..106059 | + | 369 | WP_273815667.1 | DUF305 domain-containing protein | - |
| PS054_RS24125 (106046) | 106046..107107 | + | 1062 | WP_273815669.1 | YncE family protein | - |
| PS054_RS24130 (108733) | 108733..109142 | - | 410 | Protein_109 | IS3 family transposase | - |
| PS054_RS24135 (109213) | 109213..110155 | - | 943 | Protein_110 | IS200-IS605 family transposase IS609 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|