MGE detailed information
MGE type: Genomic_island MGE length: 12038 bp
Accession: NZ_CP117404 Location: 849165..861202 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM085 Replicon: chromosome
Accession: NZ_CP117404 Location: 849165..861202 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM085 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ07_RS04075 (844611) | 844611..845709 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| PQQ07_RS04080 (845719) | 845719..847236 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| PQQ07_RS04085 (847312) | 847312..847857 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| PQQ07_RS04090 (848122) | 848122..848880 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| PQQ07_RS04100 (849165) | 849165..849971 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| PQQ07_RS04105 (850246) | 850246..850497 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| PQQ07_RS04110 (850674) | 850674..850901 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| PQQ07_RS04115 (850901) | 850901..851299 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| PQQ07_RS04120 (851679) | 851679..852137 | + | 459 | WP_000502119.1 | IS200-IS605 family transposase IS200F | Transposase |
| PQQ07_RS04125 (852817) | 852817..853353 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| PQQ07_RS04130 (853400) | 853400..854032 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| PQQ07_RS04135 (854751) | 854751..855335 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| PQQ07_RS04140 (855455) | 855455..857944 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| PQQ07_RS04145 (857985) | 857985..858728 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| PQQ07_RS04150 (858725) | 858725..859801 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| PQQ07_RS04155 (859945) | 859945..860457 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| PQQ07_RS04160 (860444) | 860444..861202 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| PQQ07_RS04165 (861412) | 861412..862296 | - | 885 | WP_000503677.1 | nickel/cobalt efflux protein RcnA | - |
| PQQ07_RS04170 (862418) | 862418..862690 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| PQQ07_RS04175 (862721) | 862721..863950 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| PQQ07_RS04180 (864092) | 864092..864547 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| PQQ07_RS04185 (864651) | 864651..865514 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.002 |