MGE detailed information
MGE type: Genomic_island MGE length: 12038 bp
Accession: NZ_CP117400 Location: 848949..860986 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM014 Replicon: chromosome
Accession: NZ_CP117400 Location: 848949..860986 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM014 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP96_RS04075 (844395) | 844395..845493 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| PQP96_RS04080 (845503) | 845503..847020 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| PQP96_RS04085 (847096) | 847096..847641 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| PQP96_RS04090 (847906) | 847906..848664 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| PQP96_RS04100 (848949) | 848949..849755 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| PQP96_RS04105 (850030) | 850030..850281 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| PQP96_RS04110 (850458) | 850458..850685 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| PQP96_RS04115 (850685) | 850685..851083 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| PQP96_RS04120 (851463) | 851463..851921 | + | 459 | WP_000502119.1 | IS200-IS605 family transposase IS200F | Transposase |
| PQP96_RS04125 (852601) | 852601..853137 | + | 537 | WP_001038506.1 | Protein DedA | VF |
| PQP96_RS04130 (853184) | 853184..853816 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| PQP96_RS04135 (854535) | 854535..855119 | + | 585 | WP_001244638.1 | hypothetical protein | VF |
| PQP96_RS04140 (855239) | 855239..857728 | + | 2490 | WP_023174961.1 | Serine hydroxymethyltransferase | VF |
| PQP96_RS04145 (857769) | 857769..858512 | + | 744 | WP_000798504.1 | HTH-type transcriptional regulator MurR | VF |
| PQP96_RS04150 (858509) | 858509..859585 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| PQP96_RS04155 (859729) | 859729..860241 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| PQP96_RS04160 (860228) | 860228..860986 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| PQP96_RS04165 (861196) | 861196..862074 | - | 879 | WP_001675932.1 | nickel/cobalt efflux protein RcnA | - |
| PQP96_RS04170 (862196) | 862196..862468 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| PQP96_RS04175 (862499) | 862499..863728 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| PQP96_RS04180 (863870) | 863870..864325 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| PQP96_RS04185 (864429) | 864429..865292 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.002 |