MGE detailed information
MGE type: Prophage MGE length: 8694 bp
Accession: NZ_CP117371 Location: 309661..318354 Organism: Salmonella enterica subsp. enterica serovar Newport strain RM049 Replicon: chromosome
Accession: NZ_CP117371 Location: 309661..318354 Organism: Salmonella enterica subsp. enterica serovar Newport strain RM049 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ06_RS01380 (305465) | 305465..306568 | + | 1104 | WP_001528146.1 | branched chain amino acid ABC transporter substrate-binding protein LivJ | - |
| PQQ06_RS01385 (306652) | 306652..306786 | - | 135 | WP_012219321.1 | hypothetical protein | - |
| PQQ06_RS01390 (306764) | 306764..307147 | - | 384 | WP_000778873.1 | aspartate 1-decarboxylase autocleavage activator PanM | - |
| PQQ06_RS01395 (307569) | 307569..308678 | + | 1110 | WP_000822976.1 | high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK | - |
| PQQ06_RS01400 (308738) | 308738..309664 | + | 927 | WP_000003007.1 | high-affinity branched-chain amino acid ABC transporter permease LivH | - |
| PQQ06_RS01405 (309661) | 309661..310938 | + | 1278 | WP_274898501.1 | high-affinity branched-chain amino acid ABC transporter permease LivM | - |
| PQQ06_RS01410 (310935) | 310935..311702 | + | 768 | WP_274898502.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| PQQ06_RS01415 (311704) | 311704..312417 | + | 714 | WP_000416114.1 | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | - |
| PQQ06_RS01420 (312549) | 312549..312770 | + | 222 | WP_001535398.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| PQQ06_RS01425 (312767) | 312767..313135 | + | 369 | WP_000174966.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| PQQ06_RS01430 (313394) | 313394..314710 | + | 1317 | WP_274898503.1 | sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB | - |
| PQQ06_RS01435 (314815) | 314815..315702 | + | 888 | WP_000099303.1 | sn-glycerol-3-phosphate ABC transporter permease UgpA | - |
| PQQ06_RS01440 (315699) | 315699..316544 | + | 846 | WP_128297892.1 | sn-glycerol-3-phosphate ABC transporter permease UgpE | - |
| PQQ06_RS01445 (316547) | 316547..317617 | + | 1071 | WP_000907845.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| PQQ06_RS01450 (317614) | 317614..318354 | + | 741 | WP_000073547.1 | glycerophosphodiester phosphodiesterase | - |
| PQQ06_RS01455 (318367) | 318367..318783 | - | 417 | WP_000826046.1 | DUF2756 family protein | - |
| PQQ06_RS01460 (318909) | 318909..320651 | + | 1743 | WP_000805094.1 | gamma-glutamyltransferase | - |
| PQQ06_RS01465 (320696) | 320696..321730 | - | 1035 | WP_000675710.1 | phosphotriesterase | - |
| PQQ06_RS01470 (321727) | 321727..322698 | - | 972 | WP_274898504.1 | DMT family transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Prophage | TA25959 | NC_016810 | 3744081..3752732 | 0.009 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26059 | NC_016856 | 3736457..3745108 | 0.009 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297241 | UFRD01000002 | 3923220..3931871 | 0.009 |