MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP117370 Location: 879676..891001 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain RM054 Replicon: chromosome
Accession: NZ_CP117370 Location: 879676..891001 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain RM054 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP97_RS04265 (875122) | 875122..876220 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| PQP97_RS04270 (876230) | 876230..877747 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| PQP97_RS04275 (877823) | 877823..878368 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| PQP97_RS04280 (878633) | 878633..879391 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| PQP97_RS04290 (879676) | 879676..880482 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| PQP97_RS04295 (880757) | 880757..881008 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| PQP97_RS04300 (881185) | 881185..881412 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| PQP97_RS04305 (881412) | 881412..881810 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| PQP97_RS04310 (882616) | 882616..883152 | + | 537 | WP_001038506.1 | hypothetical protein | VF |
| PQP97_RS04315 (883199) | 883199..883831 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| PQP97_RS04320 (884550) | 884550..885134 | + | 585 | WP_001244638.1 | hypothetical protein | VF |
| PQP97_RS04325 (885254) | 885254..887743 | + | 2490 | WP_000705483.1 | hypothetical protein | VF |
| PQP97_RS04330 (887784) | 887784..888527 | + | 744 | WP_000798504.1 | hypothetical protein | VF |
| PQP97_RS04335 (888524) | 888524..889600 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| PQP97_RS04340 (889744) | 889744..890256 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| PQP97_RS04345 (890243) | 890243..891001 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| PQP97_RS04350 (891211) | 891211..892065 | - | 855 | WP_000503685.1 | nickel/cobalt efflux protein RcnA | - |
| PQP97_RS04355 (892187) | 892187..892459 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| PQP97_RS04360 (892490) | 892490..893719 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| PQP97_RS04365 (893861) | 893861..894316 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| PQP97_RS04370 (894420) | 894420..895283 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |