MGE detailed information
MGE type: Prophage MGE length: 8652 bp
Accession: NZ_CP117357 Location: 313597..322248 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM096 Replicon: chromosome
Accession: NZ_CP117357 Location: 313597..322248 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM096 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ15_RS01405 (309402) | 309402..310502 | + | 1101 | Protein_277 | branched-chain amino acid ABC transporter substrate-binding protein | - |
| PQQ15_RS01410 (310588) | 310588..310722 | - | 135 | WP_001517957.1 | hypothetical protein | - |
| PQQ15_RS01415 (310700) | 310700..311083 | - | 384 | WP_000778873.1 | aspartate 1-decarboxylase autocleavage activator PanM | - |
| PQQ15_RS01420 (311505) | 311505..312614 | + | 1110 | WP_000822976.1 | high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK | - |
| PQQ15_RS01425 (312674) | 312674..313600 | + | 927 | WP_000003007.1 | high-affinity branched-chain amino acid ABC transporter permease LivH | - |
| PQQ15_RS01430 (313597) | 313597..314874 | + | 1278 | WP_000803766.1 | branched chain amino acid ABC transporter permease LivM | - |
| PQQ15_RS01435 (314871) | 314871..315638 | + | 768 | WP_000082083.1 | Lipopolysaccharide export system ATP-binding protein LptB | VF |
| PQQ15_RS01440 (315640) | 315640..316353 | + | 714 | WP_000416114.1 | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | - |
| PQQ15_RS01445 (316485) | 316485..316706 | + | 222 | WP_001520924.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| PQQ15_RS01450 (316703) | 316703..317071 | + | 369 | WP_001521773.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| PQQ15_RS01455 (317330) | 317330..318646 | + | 1317 | WP_000624747.1 | sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB | - |
| PQQ15_RS01460 (318710) | 318710..319597 | + | 888 | WP_000099303.1 | sn-glycerol-3-phosphate ABC transporter permease UgpA | - |
| PQQ15_RS01465 (319594) | 319594..320439 | + | 846 | WP_128297892.1 | sn-glycerol-3-phosphate ABC transporter permease UgpE | - |
| PQQ15_RS01470 (320441) | 320441..321511 | + | 1071 | WP_000907838.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| PQQ15_RS01475 (321508) | 321508..322248 | + | 741 | WP_000073548.1 | glycerophosphodiester phosphodiesterase | - |
| PQQ15_RS01480 (322261) | 322261..322677 | - | 417 | WP_000826041.1 | DUF2756 family protein | - |
| PQQ15_RS01485 (322803) | 322803..324545 | + | 1743 | WP_000805096.1 | gamma-glutamyltransferase | - |
| PQQ15_RS01490 (324590) | 324590..325624 | - | 1035 | WP_000675710.1 | phosphotriesterase | - |
| PQQ15_RS01495 (325621) | 325621..326592 | - | 972 | WP_023172837.1 | DMT family transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Prophage | TA25959 | NC_016810 | 3744081..3752732 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26059 | NC_016856 | 3736457..3745108 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297241 | UFRD01000002 | 3923220..3931871 | 0 |