MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP117244 Location: 842290..853615 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028 Replicon: chromosome
Accession: NZ_CP117244 Location: 842290..853615 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ30_RS04050 (837736) | 837736..838834 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| PQQ30_RS04055 (838844) | 838844..840361 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| PQQ30_RS04060 (840437) | 840437..840982 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| PQQ30_RS04065 (841247) | 841247..842005 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| PQQ30_RS04075 (842290) | 842290..843096 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| PQQ30_RS04080 (843371) | 843371..843622 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| PQQ30_RS04085 (843799) | 843799..844026 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| PQQ30_RS04090 (844026) | 844026..844424 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| PQQ30_RS04095 (845230) | 845230..845766 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| PQQ30_RS04100 (845813) | 845813..846445 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| PQQ30_RS04105 (847164) | 847164..847748 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| PQQ30_RS04110 (847868) | 847868..850357 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| PQQ30_RS04115 (850398) | 850398..851141 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| PQQ30_RS04120 (851138) | 851138..852214 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| PQQ30_RS04125 (852358) | 852358..852870 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| PQQ30_RS04130 (852857) | 852857..853615 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| PQQ30_RS04135 (853825) | 853825..854727 | - | 903 | WP_023893995.1 | nickel/cobalt efflux protein RcnA | - |
| PQQ30_RS04140 (854849) | 854849..855121 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| PQQ30_RS04145 (855152) | 855152..856381 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| PQQ30_RS04150 (856523) | 856523..856978 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| PQQ30_RS04155 (857082) | 857082..857945 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |