MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 154848 bp
Accession: NZ_CP116678 Location: 1..154848 Organism: Edwardsiella tarda strain SC002 Replicon: plasmid pEtSC002-3
Accession: NZ_CP116678 Location: 1..154848 Organism: Edwardsiella tarda strain SC002 Replicon: plasmid pEtSC002-3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PHA77_RS18240 (PHA77_18240) | 1..762 | - | 762 | WP_279509869.1 | ion channel | - |
| PHA77_RS18245 (PHA77_18245) | 1350..2969 | - | 1620 | WP_279509871.1 | peptide ABC transporter substrate-binding protein | - |
| PHA77_RS18250 (PHA77_18250) | 3379..3573 | + | 195 | WP_279509872.1 | IS110 family transposase ISCARN91 | Transposase |
| PHA77_RS18255 (PHA77_18255) | 3890..4257 | + | 368 | Protein_3 | IS3 family transposase ISEc25 | Transposase |
| PHA77_RS18260 (PHA77_18260) | 4333..4584 | + | 252 | Protein_4 | IS3 family transposase ISVch4 | Transposase |
| PHA77_RS18265 (PHA77_18265) | 4815..5453 | + | 639 | Protein_5 | IS110 family transposase ISWpi13 | Transposase |
| PHA77_RS18270 (PHA77_18270) | 5546..7042 | + | 1497 | WP_279508459.1 | IS21 family transposase ISEc10 | Transposase |
| PHA77_RS18275 (PHA77_18275) | 7042..7797 | + | 756 | WP_097364736.1 | IS21 family transposase ISEc10 | Transposase |
| PHA77_RS18280 (PHA77_18280) | 7867..8571 | + | 705 | Protein_8 | transposase | - |
| PHA77_RS18285 (PHA77_18285) | 8659..9808 | + | 1150 | Protein_9 | IS30 family transposase ISAhy3 | Transposase |
| PHA77_RS18290 (PHA77_18290) | 9815..10723 | + | 909 | Protein_10 | IS3 family transposase ISLad1 | Transposase |
| PHA77_RS18295 (PHA77_18295) | 10704..11150 | + | 447 | Protein_11 | IS630 family transposase ISEc33 | Transposase |
| PHA77_RS18300 (PHA77_18300) | 11198..12712 | - | 1515 | WP_279509873.1 | ISNCY family transposase ISBj12 | Transposase |
| PHA77_RS18305 (PHA77_18305) | 12807..13187 | - | 381 | Protein_13 | transposase | - |
| PHA77_RS18310 (PHA77_18310) | 13500..13841 | - | 342 | WP_279509757.1 | hypothetical protein | - |
| PHA77_RS18315 (PHA77_18315) | 13834..14214 | - | 381 | WP_279509758.1 | plasmid partitioning/stability family protein | - |
| PHA77_RS18320 (PHA77_18320) | 14219..15175 | - | 957 | WP_109609982.1 | plasmid segregation protein ParM | - |
| PHA77_RS18325 (PHA77_18325) | 15337..15429 | + | 93 | Protein_17 | DUF4113 domain-containing protein | - |
| PHA77_RS18330 (PHA77_18330) | 15606..16244 | + | 639 | WP_279509759.1 | AAA family ATPase | - |
| PHA77_RS18335 (PHA77_18335) | 16244..16537 | + | 294 | WP_279509760.1 | CopG family transcriptional regulator | - |
| PHA77_RS18340 (PHA77_18340) | 16660..17460 | - | 801 | WP_279509762.1 | site-specific integrase | - |
| PHA77_RS18345 (PHA77_18345) | 17457..18080 | - | 624 | WP_279509763.1 | DUF2913 family protein | - |
| PHA77_RS18350 (PHA77_18350) | 18190..19131 | - | 942 | WP_279509764.1 | hypothetical protein | - |
| PHA77_RS18355 (PHA77_18355) | 19682..19939 | + | 258 | WP_279509874.1 | hypothetical protein | - |
| PHA77_RS18360 (PHA77_18360) | 19936..20547 | + | 612 | WP_279509876.1 | hypothetical protein | - |
| PHA77_RS18365 (PHA77_18365) | 20591..21013 | + | 423 | WP_279509878.1 | hypothetical protein | - |
| PHA77_RS18375 (PHA77_18375) | 22210..22671 | - | 462 | Protein_27 | IS110 family transposase ISBcen3 | Transposase |
| PHA77_RS18380 (PHA77_18380) | 22935..23405 | + | 471 | WP_279509880.1 | DUF302 domain-containing protein | - |
| PHA77_RS18385 (PHA77_18385) | 23429..24118 | + | 690 | WP_279509881.1 | hypothetical protein | - |
| PHA77_RS18390 (PHA77_18390) | 24196..24780 | - | 585 | Protein_30 | IS6 family transposase IS26 | Transposase |
| PHA77_RS18395 (PHA77_18395) | 24876..26495 | + | 1620 | WP_279509735.1 | ISL3 family transposase ISEc38 | Transposase |
| PHA77_RS18400 (PHA77_18400) | 26641..26952 | + | 312 | WP_279509738.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PHA77_RS18405 (PHA77_18405) | 26952..27239 | + | 288 | WP_279509739.1 | helix-turn-helix transcriptional regulator | - |
| PHA77_RS18410 (PHA77_18410) | 27371..27466 | + | 96 | Protein_34 | IS66 family transposase ISEc22 | Transposase |
| PHA77_RS18415 (PHA77_18415) | 27562..28341 | + | 780 | Protein_35 | IS256 family transposase ISMaq7 | Transposase |
| PHA77_RS18420 (PHA77_18420) | 28434..30230 | + | 1797 | Protein_36 | ISL3 family transposase ISEc38 | Transposase |
| PHA77_RS18425 (PHA77_18425) | 30795..31742 | + | 948 | WP_279509882.1 | hypothetical protein | VF |
| PHA77_RS18430 (PHA77_18430) | 32081..32845 | + | 765 | WP_279509883.1 | helix-turn-helix domain-containing protein | - |
| PHA77_RS18435 (PHA77_18435) | 33070..33564 | - | 495 | WP_279509886.1 | radical SAM protein | - |
| PHA77_RS18440 (PHA77_18440) | 33805..34458 | + | 654 | WP_279509887.1 | IS66 family transposase ISCro1 | Transposase |
| PHA77_RS18445 (PHA77_18445) | 34455..34802 | + | 348 | WP_279509727.1 | IS66 family transposase ISCro1 | Transposase |
| PHA77_RS18450 (PHA77_18450) | 34822..36393 | + | 1572 | WP_279509728.1 | IS66 family transposase ISCro1 | Transposase |
| PHA77_RS18455 (PHA77_18455) | 36425..36649 | - | 225 | Protein_43 | IS66 family insertion sequence element accessory protein TnpB | - |
| PHA77_RS18460 (PHA77_18460) | 37035..37982 | - | 948 | WP_279509889.1 | ISNCY family transposase ISRor2 | VF |
| PHA77_RS18465 (PHA77_18465) | 38944..39861 | - | 918 | WP_279509971.1 | Replication protein | - |
| PHA77_RS18470 (PHA77_18470) | 40593..41024 | - | 432 | WP_279509892.1 | hypothetical protein | - |
| PHA77_RS18475 (PHA77_18475) | 41337..41651 | - | 315 | WP_279509893.1 | CcdB family protein | Toxin Detail |
| PHA77_RS18480 (PHA77_18480) | 41654..41890 | - | 237 | WP_279509894.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| PHA77_RS18485 (PHA77_18485) | 42002..42622 | - | 621 | WP_279509895.1 | fertility inhibition protein FinO | - |
| PHA77_RS18490 (PHA77_18490) | 42636..43361 | - | 726 | WP_141112577.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| PHA77_RS18495 (PHA77_18495) | 43444..48681 | - | 5238 | WP_279509896.1 | Multifunctional conjugation protein TraI | Relaxase |
| PHA77_RS18500 (PHA77_18500) | 48796..49023 | + | 228 | WP_279509898.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| PHA77_RS18505 (PHA77_18505) | 49023..49421 | + | 399 | WP_279509900.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| PHA77_RS18510 (PHA77_18510) | 49499..51703 | - | 2205 | WP_279509902.1 | type IV conjugative transfer system coupling protein TraD | - |
| PHA77_RS18515 (PHA77_18515) | 51790..52287 | - | 498 | WP_279509904.1 | conjugal transfer protein TraS | - |
| PHA77_RS18520 (PHA77_18520) | 52296..55148 | - | 2853 | WP_279509905.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| PHA77_RS18525 (PHA77_18525) | 55148..56524 | - | 1377 | WP_279509906.1 | conjugal transfer pilus assembly protein TraH | - |
| PHA77_RS18530 (PHA77_18530) | 56502..57251 | - | 750 | WP_279509908.1 | hypothetical protein | - |
| PHA77_RS18535 (PHA77_18535) | 57244..57621 | - | 378 | WP_279509910.1 | hypothetical protein | - |
| PHA77_RS18540 (PHA77_18540) | 57587..58144 | - | 558 | WP_279509972.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| PHA77_RS18545 (PHA77_18545) | 58137..58370 | - | 234 | WP_279509912.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| PHA77_RS18550 (PHA77_18550) | 58381..59133 | - | 753 | WP_097364771.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| PHA77_RS18555 (PHA77_18555) | 59164..60939 | - | 1776 | WP_279509973.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| PHA77_RS18560 (PHA77_18560) | 60992..61657 | - | 666 | WP_236893448.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| PHA77_RS18565 (PHA77_18565) | 61668..62678 | - | 1011 | WP_279509914.1 | conjugal transfer pilus assembly protein TraU | - |
| PHA77_RS18570 (PHA77_18570) | 62675..63310 | - | 636 | WP_097364773.1 | type-F conjugative transfer system protein TraW | - |
| PHA77_RS18575 (PHA77_18575) | 63312..63665 | - | 354 | WP_279509974.1 | type-F conjugative transfer system protein TrbI | - |
| PHA77_RS18580 (PHA77_18580) | 63680..66307 | - | 2628 | WP_279509916.1 | type IV secretion system protein TraC | - |
| PHA77_RS18585 (PHA77_18585) | 66436..67002 | - | 567 | WP_279509917.1 | type IV conjugative transfer system lipoprotein TraV | - |
| PHA77_RS18590 (PHA77_18590) | 67014..67226 | - | 213 | WP_279509918.1 | hypothetical protein | - |
| PHA77_RS18595 (PHA77_18595) | 67301..67591 | - | 291 | WP_279509919.1 | hypothetical protein | - |
| PHA77_RS18600 (PHA77_18600) | 67594..68994 | - | 1401 | WP_279509975.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| PHA77_RS18605 (PHA77_18605) | 68991..69722 | - | 732 | WP_279509920.1 | type-F conjugative transfer system secretin TraK | - |
| PHA77_RS18610 (PHA77_18610) | 69709..70275 | - | 567 | WP_236893460.1 | type IV conjugative transfer system protein TraE | - |
| PHA77_RS18615 (PHA77_18615) | 70293..70598 | - | 306 | WP_035599570.1 | type IV conjugative transfer system protein TraL | - |
| PHA77_RS18620 (PHA77_18620) | 70614..70961 | - | 348 | WP_279509921.1 | type IV conjugative transfer system pilin TraA | - |
| PHA77_RS18625 (PHA77_18625) | 71033..71245 | - | 213 | WP_279509923.1 | TraY domain-containing protein | - |
| PHA77_RS18630 (PHA77_18630) | 71375..72079 | - | 705 | WP_279509925.1 | hypothetical protein | - |
| PHA77_RS18635 (PHA77_18635) | 72322..73062 | - | 741 | Protein_79 | complement resistance protein TraT | - |
| PHA77_RS18640 (PHA77_18640) | 73119..73505 | - | 387 | WP_279509814.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| PHA77_RS18645 (PHA77_18645) | 73944..74417 | + | 474 | WP_279509813.1 | hypothetical protein | VF |
| PHA77_RS18650 (PHA77_18650) | 74921..75803 | - | 883 | Protein_82 | zincin-like metallopeptidase domain-containing protein | - |
| PHA77_RS18655 (PHA77_18655) | 76614..78233 | - | 1620 | WP_279509927.1 | ISL3 family transposase ISEc38 | Transposase |
| PHA77_RS18660 (PHA77_18660) | 79098..79808 | - | 711 | WP_279509811.1 | plasmid SOS inhibition protein A | - |
| PHA77_RS18665 (PHA77_18665) | 79805..80008 | - | 204 | WP_279509929.1 | conjugation system SOS inhibitor PsiB family protein | - |
| PHA77_RS18670 (PHA77_18670) | 80053..82023 | - | 1971 | WP_279509930.1 | ParB/RepB/Spo0J family partition protein | - |
| PHA77_RS18675 (PHA77_18675) | 82134..82679 | - | 546 | WP_279509932.1 | single-stranded DNA-binding protein | - |
| PHA77_RS18680 (PHA77_18680) | 82708..82869 | - | 162 | WP_279509933.1 | single-stranded DNA-binding protein | - |
| PHA77_RS18685 (PHA77_18685) | 82966..83157 | - | 192 | WP_279509935.1 | hypothetical protein | - |
| PHA77_RS18690 (PHA77_18690) | 83474..83959 | - | 486 | Protein_90 | IS21 family transposase ISSso4 | Transposase |
| PHA77_RS18695 (PHA77_18695) | 84313..85863 | + | 1551 | WP_279509937.1 | IS21 family transposase ISSoEn3 | Transposase |
| PHA77_RS18700 (PHA77_18700) | 85875..86624 | + | 750 | WP_279509939.1 | IS21 family transposase ISSoEn3 | Transposase |
| PHA77_RS18705 (PHA77_18705) | 86923..87347 | - | 425 | Protein_93 | IS481 family transposase ISNwi5 | Transposase |
| PHA77_RS18710 (PHA77_18710) | 87525..87722 | - | 198 | WP_279509940.1 | hypothetical protein | - |
| PHA77_RS18715 (PHA77_18715) | 87786..88943 | - | 1158 | WP_279509941.1 | porin | - |
| PHA77_RS18720 (PHA77_18720) | 88968..89696 | - | 729 | WP_279509942.1 | hypothetical protein | VF |
| PHA77_RS18725 (PHA77_18725) | 89883..90560 | - | 678 | WP_279509943.1 | hypothetical protein | VF |
| PHA77_RS18730 (PHA77_18730) | 90998..91848 | - | 851 | Protein_98 | IS3 family transposase | - |
| PHA77_RS18735 (PHA77_18735) | 91916..93065 | + | 1150 | Protein_99 | IS30 family transposase ISAhy3 | Transposase |
| PHA77_RS18740 (PHA77_18740) | 93078..93332 | - | 255 | Protein_100 | IS3 family transposase ISVch4 | Transposase |
| PHA77_RS18745 (PHA77_18745) | 93399..93665 | - | 267 | Protein_101 | IS3 family transposase ISVch4 | Transposase |
| PHA77_RS18750 (PHA77_18750) | 93709..93877 | + | 169 | Protein_102 | IS256 family transposase | - |
| PHA77_RS18755 (PHA77_18755) | 94153..94767 | - | 615 | WP_279509944.1 | DUF1440 domain-containing protein | - |
| PHA77_RS18760 (PHA77_18760) | 95217..103709 | - | 8493 | WP_279509945.1 | hypothetical protein | VF |
| PHA77_RS18765 (PHA77_18765) | 103953..105776 | - | 1824 | WP_279509946.1 | Heme/hemopexin transporter protein HuxB | VF |
| PHA77_RS18770 (PHA77_18770) | 106444..107403 | - | 960 | WP_279509948.1 | ISNCY family transposase ISRor2 | VF |
| PHA77_RS18775 (PHA77_18775) | 107711..109225 | + | 1515 | Protein_107 | IS21 family transposase ISSso4 | Transposase |
| PHA77_RS18780 (PHA77_18780) | 109249..110004 | + | 756 | WP_279509949.1 | IS21 family transposase ISSso4 | Transposase |
| PHA77_RS18785 (PHA77_18785) | 110338..110607 | + | 270 | WP_279509951.1 | hypothetical protein | - |
| PHA77_RS18790 (PHA77_18790) | 110595..111224 | + | 630 | WP_279509952.1 | hypothetical protein | - |
| PHA77_RS18795 (PHA77_18795) | 111390..111635 | + | 246 | WP_279509953.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| PHA77_RS18800 (PHA77_18800) | 111635..111967 | + | 333 | WP_279509954.1 | endoribonuclease MazF | Toxin Detail |
| PHA77_RS18805 (PHA77_18805) | 112091..112741 | - | 651 | Protein_113 | IS630 family transposase ISSpu2 | Transposase |
| PHA77_RS18810 (PHA77_18810) | 112844..113518 | + | 675 | Protein_114 | IS21 family transposase IS640 | Transposase |
| PHA77_RS18815 (PHA77_18815) | 113743..114966 | + | 1224 | WP_279509955.1 | IS91 family transposase ISVa3 | Transposase |
| PHA77_RS18820 (PHA77_18820) | 115518..116501 | - | 984 | WP_068872129.1 | ParB family protein | - |
| PHA77_RS18825 (PHA77_18825) | 116509..117708 | - | 1200 | WP_279509956.1 | AAA family ATPase | - |
| PHA77_RS18830 (PHA77_18830) | 118330..119313 | + | 984 | WP_035601025.1 | replication initiation protein | - |
| PHA77_RS18835 (PHA77_18835) | 119372..120043 | - | 672 | WP_279509976.1 | tyrosine-type recombinase/integrase | - |
| PHA77_RS18840 (PHA77_18840) | 120706..121108 | - | 403 | Protein_120 | transposase | - |
| PHA77_RS18845 (PHA77_18845) | 121496..121912 | + | 417 | WP_279509958.1 | VapA/VapB family virulence-associated protein | - |
| PHA77_RS18850 (PHA77_18850) | 122637..122774 | + | 138 | WP_279509959.1 | IS3 family transposase IS1240 | Transposase |
| PHA77_RS18855 (PHA77_18855) | 123004..124088 | - | 1085 | Protein_123 | IS3 family transposase | - |
| PHA77_RS18860 (PHA77_18860) | 124385..124957 | - | 573 | WP_279509960.1 | hypothetical protein | - |
| PHA77_RS18865 (PHA77_18865) | 125550..127460 | - | 1911 | WP_279509961.1 | UDP-glucose:protein N-beta-glucosyltransferase | VF |
| PHA77_RS18870 (PHA77_18870) | 128121..128324 | - | 204 | Protein_126 | IS3 family transposase | - |
| PHA77_RS18875 (PHA77_18875) | 128445..129476 | + | 1032 | WP_279509962.1 | IS630 family transposase ISEc33 | Transposase |
| PHA77_RS18880 (PHA77_18880) | 129502..129741 | - | 240 | Protein_128 | IS3 family transposase IS1230B | Transposase |
| PHA77_RS18885 (PHA77_18885) | 129847..130527 | - | 681 | WP_279509963.1 | respiratory nitrate reductase subunit gamma | - |
| PHA77_RS18890 (PHA77_18890) | 130538..131185 | - | 648 | WP_279509965.1 | nitrate reductase molybdenum cofactor assembly chaperone | - |
| PHA77_RS18895 (PHA77_18895) | 131189..132709 | - | 1521 | WP_279509966.1 | nitrate reductase subunit beta | - |
| PHA77_RS18900 (PHA77_18900) | 132736..136407 | - | 3672 | WP_279508810.1 | nitrate reductase subunit alpha | - |
| PHA77_RS18905 (PHA77_18905) | 136426..137808 | - | 1383 | WP_279509967.1 | NarK family nitrate/nitrite MFS transporter | - |
| PHA77_RS18910 (PHA77_18910) | 138721..139728 | + | 1008 | Protein_134 | IS110 family transposase ISEc11 | Transposase |
| PHA77_RS18915 (PHA77_18915) | 139715..139996 | + | 282 | Protein_135 | hypothetical protein | VF |
| PHA77_RS18920 (PHA77_18920) | 140111..140344 | + | 234 | WP_279509977.1 | hypothetical protein | - |
| PHA77_RS18925 (PHA77_18925) | 140987..142810 | + | 1824 | WP_279509968.1 | Heme/hemopexin transporter protein HuxB | VF |
| PHA77_RS18930 (PHA77_18930) | 143054..151435 | + | 8382 | WP_279509969.1 | hypothetical protein | VF |
| PHA77_RS18935 (PHA77_18935) | 151771..152535 | + | 765 | WP_279509883.1 | helix-turn-helix domain-containing protein | - |
| PHA77_RS18940 (PHA77_18940) | 153309..154848 | + | 1540 | WP_279509970.1 | S6 family peptidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|