MGE detailed information
MGE type: Mobilizable plasmid MGE length: 107932 bp
Accession: NZ_CP116146 Location: 1..107932 Organism: Escherichia coli strain DETEC-P622 Replicon: plasmid pDETEC55
Accession: NZ_CP116146 Location: 1..107932 Organism: Escherichia coli strain DETEC-P622 Replicon: plasmid pDETEC55
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIB88_RS24690 (1) | 1..978 | + | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| PIB88_RS24695 (1263) | 1263..2003 | - | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| PIB88_RS24700 (2124) | 2124..2312 | - | 189 | WP_001309252.1 | hypothetical protein | - |
| PIB88_RS24705 (2679) | 2679..3848 | + | 1170 | WP_001072358.1 | hypothetical protein | - |
| PIB88_RS24710 (4074) | 4074..4249 | - | 176 | Protein_4 | IS3 family transposase | - |
| PIB88_RS24715 (4695) | 4695..4967 | - | 273 | WP_001322642.1 | adhesin biosynthesis transcription regulatory family protein | - |
| PIB88_RS24720 (5504) | 5504..5928 | - | 425 | Protein_6 | IS3 family transposase IS2 | Transposase |
| PIB88_RS24725 (6210) | 6210..8180 | + | 1971 | WP_001298664.1 | Hemin receptor | VF |
| PIB88_RS24730 (8187) | 8187..8978 | + | 792 | WP_000977394.1 | DUF4198 domain-containing protein | - |
| PIB88_RS24735 (9041) | 9041..9649 | - | 609 | Protein_9 | IS66 family transposase ISEc22 | Transposase |
| PIB88_RS24740 (9717) | 9717..10499 | - | 783 | WP_001300609.1 | IS21 family transposase IS100kyp | Transposase |
| PIB88_RS24745 (10496) | 10496..11518 | - | 1023 | WP_001310017.1 | IS21 family transposase IS100kyp | Transposase |
| PIB88_RS24750 (11604) | 11604..12539 | - | 936 | Protein_12 | IS66 family transposase ISEc22 | Transposase |
| PIB88_RS24755 (12588) | 12588..12935 | - | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| PIB88_RS24760 (12932) | 12932..13336 | - | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| PIB88_RS24765 (13416) | 13416..13754 | - | 339 | Protein_15 | IS3 family transposase IS629 | Transposase |
| PIB88_RS24770 (13838) | 13838..15346 | - | 1509 | WP_001189113.1 | group II intron reverse transcriptase/maturase | - |
| PIB88_RS24775 (16019) | 16019..16758 | - | 740 | Protein_17 | IS3 family transposase IS629 | Transposase |
| PIB88_RS24780 (16784) | 16784..17089 | + | 306 | Protein_18 | IS91 family transposase ISSbo1 | Transposase |
| PIB88_RS24785 (17612) | 17612..18787 | - | 1176 | WP_001020413.1 | putative protein YncE | VF |
| PIB88_RS24790 (18856) | 18856..21117 | - | 2262 | WP_001100763.1 | TonB-dependent receptor | - |
| PIB88_RS24795 (21286) | 21286..21435 | - | 150 | Protein_21 | energy transducer TonB | - |
| PIB88_RS24800 (21493) | 21493..22197 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| PIB88_RS24805 (22261) | 22261..22698 | - | 438 | Protein_23 | IS6 family transposase IS6100 | Transposase |
| PIB88_RS24810 (22816) | 22816..22881 | - | 66 | Protein_24 | EAL domain-containing protein | - |
| PIB88_RS24815 (22925) | 22925..23230 | - | 306 | WP_000130000.1 | Transcriptional regulator | Relaxase |
| PIB88_RS24820 (23241) | 23241..24446 | - | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| PIB88_RS24825 (24602) | 24602..24805 | - | 204 | WP_000376616.1 | hypothetical protein | - |
| PIB88_RS24830 (24933) | 24933..25772 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| PIB88_RS24835 (25766) | 25766..26113 | - | 348 | WP_000679427.1 | quaternary ammonium compound efflux SMR transporter QacE delta 1 | - |
| PIB88_RS24840 (26319) | 26319..27107 | - | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| PIB88_RS24845 (27238) | 27238..27711 | - | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| PIB88_RS24850 (27869) | 27869..28618 | + | 750 | Protein_32 | IS91 family transposase ISAzo26 | Transposase |
| PIB88_RS24855 (28677) | 28677..29381 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| PIB88_RS24860 (29436) | 29436..29768 | + | 333 | Protein_34 | IS6 family transposase IS6100 | Transposase |
| PIB88_RS24865 (30261) | 30261..30845 | - | 585 | WP_001137892.1 | macrolide-binding transcriptional repressor MphR(A) | - |
| PIB88_RS24870 (30845) | 30845..32083 | - | 1239 | WP_000004159.1 | macrolide resistance MFS transporter Mrx(A) | - |
| PIB88_RS24875 (32080) | 32080..32985 | - | 906 | WP_000219391.1 | hypothetical protein | ARG |
| PIB88_RS24880 (33107) | 33107..33811 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| PIB88_RS24885 (33800) | 33800..34163 | + | 364 | Protein_39 | incFII family plasmid replication initiator RepA | - |
| PIB88_RS24890 (35103) | 35103..35756 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| PIB88_RS24895 (35849) | 35849..36106 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| PIB88_RS24900 (36039) | 36039..36440 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| PIB88_RS24905 (36725) | 36725..38035 | + | 1311 | WP_001262765.1 | DUF262 domain-containing protein | - |
| PIB88_RS24910 (38064) | 38064..38162 | + | 99 | Protein_44 | IS1 family transposase | - |
| PIB88_RS24915 (38312) | 38312..39172 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| PIB88_RS24920 (39471) | 39471..40175 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| PIB88_RS24925 (40227) | 40227..40331 | - | 105 | Protein_47 | tunicamycin resistance protein | - |
| PIB88_RS24930 (40344) | 40344..41204 | - | 861 | WP_000557454.1 | SPbeta prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| PIB88_RS24935 (41347) | 41347..42309 | + | 963 | Protein_49 | IS4 family transposase IS10R | Transposase |
| PIB88_RS24940 (42419) | 42419..43225 | + | 807 | Protein_50 | IS4 family transposase IS10R | Transposase |
| PIB88_RS24945 (43277) | 43277..43981 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| PIB88_RS24950 (44046) | 44046..44438 | + | 393 | Protein_52 | tunicamycin resistance protein | - |
| PIB88_RS24955 (44920) | 44920..45111 | - | 192 | WP_000951934.1 | hypothetical protein | - |
| PIB88_RS24960 (45135) | 45135..45362 | + | 228 | WP_000248278.1 | hypothetical protein | - |
| PIB88_RS24965 (45413) | 45413..46549 | + | 1137 | WP_000080860.1 | DUF3883 domain-containing protein | - |
| PIB88_RS24970 (46664) | 46664..47927 | + | 1264 | Protein_56 | IS1182 family transposase ISCfr1 | Transposase |
| PIB88_RS24975 (47992) | 47992..48696 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| PIB88_RS24980 (48750) | 48750..48899 | - | 150 | Protein_58 | IS6 family transposase IS15DII | Transposase |
| PIB88_RS24985 (48962) | 48962..49597 | - | 636 | Protein_59 | type-F conjugative transfer system pilin assembly protein TraF | - |
| PIB88_RS24990 (49590) | 49590..49847 | - | 258 | WP_053913405.1 | conjugal transfer protein TrbE | - |
| PIB88_RS24995 (49874) | 49874..51724 | - | 1851 | WP_000821866.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| PIB88_RS25000 (51721) | 51721..52359 | - | 639 | WP_001080259.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| PIB88_RS25005 (52368) | 52368..52673 | - | 306 | WP_000224413.1 | hypothetical protein | - |
| PIB88_RS25010 (52703) | 52703..53695 | - | 993 | WP_000830190.1 | conjugal transfer pilus assembly protein TraU | - |
| PIB88_RS25015 (53692) | 53692..54324 | - | 633 | WP_001749440.1 | type-F conjugative transfer system protein TraW | - |
| PIB88_RS25020 (54321) | 54321..54707 | - | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| PIB88_RS25025 (54704) | 54704..57331 | - | 2628 | WP_271287829.1 | type IV secretion system protein TraC | - |
| PIB88_RS25030 (57491) | 57491..57712 | - | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| PIB88_RS25035 (57847) | 57847..58362 | - | 516 | WP_000809886.1 | type IV conjugative transfer system lipoprotein TraV | - |
| PIB88_RS25040 (58362) | 58362..58673 | - | 312 | WP_001057272.1 | conjugal transfer protein TrbD | - |
| PIB88_RS25045 (58660) | 58660..59226 | - | 567 | WP_001617877.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| PIB88_RS25050 (59216) | 59216..60667 | - | 1452 | WP_000146687.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| PIB88_RS25055 (60667) | 60667..61395 | - | 729 | WP_042634687.1 | type-F conjugative transfer system secretin TraK | - |
| PIB88_RS25060 (61382) | 61382..61948 | - | 567 | WP_000399794.1 | type IV conjugative transfer system protein TraE | - |
| PIB88_RS25065 (61970) | 61970..62281 | - | 312 | WP_000012107.1 | type IV conjugative transfer system protein TraL | - |
| PIB88_RS25070 (62286) | 62286..62648 | - | 363 | WP_000338606.1 | type IV conjugative transfer system pilin TraA | - |
| PIB88_RS25075 (62682) | 62682..62909 | - | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| PIB88_RS25080 (62997) | 62997..63674 | - | 678 | WP_001348626.1 | PAS domain-containing protein | - |
| PIB88_RS25085 (63808) | 63808..64191 | - | 384 | WP_001151566.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| PIB88_RS25090 (64522) | 64522..65124 | + | 603 | WP_000243712.1 | hypothetical protein | VF |
| PIB88_RS25095 (65421) | 65421..66242 | - | 822 | WP_001234469.1 | DUF932 domain-containing protein | - |
| PIB88_RS25100 (66361) | 66361..66648 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| PIB88_RS25105 (66673) | 66673..66879 | - | 207 | WP_000275859.1 | hypothetical protein | - |
| PIB88_RS25110 (66949) | 66949..67122 | + | 174 | Protein_84 | hypothetical protein | - |
| PIB88_RS25115 (67120) | 67120..67350 | - | 231 | WP_001426396.1 | hypothetical protein | - |
| PIB88_RS25120 (67570) | 67570..67695 | - | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| PIB88_RS25125 (67637) | 67637..67786 | - | 150 | Protein_87 | plasmid maintenance protein Mok | - |
| - (67772) | 67772..67812 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - (67772) | 67772..67812 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - (67772) | 67772..67812 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - (67772) | 67772..67812 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - (69256) | 69256..69442 | - | 187 | NuclAT_0 | - | - |
| - (69256) | 69256..69442 | - | 187 | NuclAT_0 | - | - |
| - (69256) | 69256..69442 | - | 187 | NuclAT_0 | - | - |
| - (69256) | 69256..69442 | - | 187 | NuclAT_0 | - | - |
| PIB88_RS25135 (69411) | 69411..70173 | - | 763 | Protein_89 | plasmid SOS inhibition protein A | - |
| PIB88_RS25140 (70170) | 70170..70604 | - | 435 | WP_000845940.1 | conjugation system SOS inhibitor PsiB | - |
| PIB88_RS25145 (70659) | 70659..72617 | - | 1959 | WP_000117179.1 | ParB/RepB/Spo0J family partition protein | - |
| PIB88_RS25150 (72683) | 72683..72916 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| PIB88_RS25155 (72979) | 72979..73518 | - | 540 | WP_000290841.1 | single-stranded DNA-binding protein | - |
| PIB88_RS25160 (73544) | 73544..73750 | - | 207 | WP_000547975.1 | hypothetical protein | - |
| PIB88_RS25165 (73663) | 73663..73998 | - | 336 | WP_013023883.1 | hypothetical protein | - |
| PIB88_RS25170 (73991) | 73991..74260 | - | 270 | WP_071977877.1 | hypothetical protein | - |
| PIB88_RS25175 (74161) | 74161..74385 | - | 225 | WP_016238251.1 | hypothetical protein | - |
| PIB88_RS25180 (74411) | 74411..74974 | - | 564 | WP_001348621.1 | class I SAM-dependent methyltransferase | - |
| PIB88_RS25185 (75021) | 75021..76382 | - | 1362 | WP_050008613.1 | DUF3560 domain-containing protein | - |
| PIB88_RS25190 (76434) | 76434..76664 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| PIB88_RS25195 (77699) | 77699..77890 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| PIB88_RS25200 (77887) | 77887..78309 | - | 423 | WP_000271753.1 | DUF1380 family protein | - |
| PIB88_RS25205 (78356) | 78356..78781 | - | 426 | WP_001198928.1 | antirestriction protein | - |
| PIB88_RS25210 (79198) | 79198..79974 | - | 777 | WP_001753849.1 | hypothetical protein | - |
| PIB88_RS25215 (80025) | 80025..80543 | - | 519 | WP_123325260.1 | DUF1380 family protein | - |
| PIB88_RS25220 (80473) | 80473..80694 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| PIB88_RS25225 (80695) | 80695..81378 | - | 684 | WP_000086185.1 | DNA methylase | - |
| PIB88_RS25230 (81455) | 81455..81766 | - | 312 | WP_032143366.1 | hypothetical protein | - |
| PIB88_RS25235 (81763) | 81763..82665 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| PIB88_RS25240 (83532) | 83532..84503 | - | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| PIB88_RS25245 (84503) | 84503..85669 | - | 1167 | WP_000772446.1 | hypothetical protein | VF |
| PIB88_RS25250 (86257) | 86257..87012 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| PIB88_RS25255 (87764) | 87764..88570 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| PIB88_RS25260 (88571) | 88571..88876 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| PIB88_RS25265 (88878) | 88878..89096 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| PIB88_RS25270 (89804) | 89804..90799 | + | 996 | WP_000246636.1 | hypothetical protein | - |
| PIB88_RS25275 (90842) | 90842..91735 | + | 894 | WP_001553853.1 | S-4TM family putative pore-forming effector | - |
| PIB88_RS25285 (92783) | 92783..95899 | - | 3117 | WP_001553854.1 | HsdR family type I site-specific deoxyribonuclease | - |
| PIB88_RS25290 (96021) | 96021..97304 | - | 1284 | WP_001617890.1 | restriction endonuclease subunit S | - |
| PIB88_RS25295 (97301) | 97301..98857 | - | 1557 | WP_001617892.1 | type I restriction-modification system subunit M | - |
| PIB88_RS25300 (99040) | 99040..99261 | + | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| PIB88_RS25305 (99261) | 99261..99641 | + | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| PIB88_RS25310 (99646) | 99646..99825 | + | 180 | WP_001513661.1 | hypothetical protein | - |
| PIB88_RS25315 (99853) | 99853..100131 | + | 279 | Protein_125 | pdcB | - |
| PIB88_RS25320 (100136) | 100136..100549 | + | 414 | Protein_126 | IS3 family transposase ISLad1 | Transposase |
| PIB88_RS25325 (100499) | 100499..100834 | - | 336 | WP_169329198.1 | type I deoxyribonuclease HsdR | - |
| PIB88_RS25330 (101044) | 101044..102024 | - | 981 | WP_000019407.1 | IS5 family transposase IS5D | Transposase |
| PIB88_RS25335 (102268) | 102268..103671 | + | 1404 | WP_001373486.1 | S-methylmethionine permease | - |
| PIB88_RS25340 (103658) | 103658..104590 | + | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| PIB88_RS25345 (104699) | 104699..105028 | - | 330 | Protein_131 | TOBE domain-containing protein | - |
| PIB88_RS25355 (105889) | 105889..106047 | + | 159 | WP_228955855.1 | abortive infection family protein | - |
| PIB88_RS25360 (106206) | 106206..107177 | - | 972 | Protein_134 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|