MGE detailed information
MGE type: Conjugative plasmid MGE length: 88676 bp
Accession: NZ_CP116045 Location: 1..88676 Organism: Escherichia coli strain STEC1575 Replicon: plasmid p_STEC1575_1
Accession: NZ_CP116045 Location: 1..88676 Organism: Escherichia coli strain STEC1575 Replicon: plasmid p_STEC1575_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PHA55_RS24135 (430) | 430..651 | - | 222 | WP_001104885.1 | hypothetical protein | - |
| PHA55_RS24140 (652) | 652..1335 | - | 684 | WP_032219114.1 | DNA methylase | - |
| PHA55_RS24145 (1412) | 1412..1723 | - | 312 | WP_032219116.1 | hypothetical protein | - |
| PHA55_RS24150 (1720) | 1720..2622 | - | 903 | WP_124062600.1 | DUF1281 domain-containing protein | - |
| PHA55_RS24155 (3040) | 3040..3288 | + | 249 | WP_019842136.1 | DinI-like family protein | - |
| PHA55_RS24160 (3285) | 3285..3722 | + | 438 | WP_032219119.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| PHA55_RS24165 (3722) | 3722..4992 | + | 1271 | Protein_7 | translesion error-prone DNA polymerase V subunit UmuC | - |
| PHA55_RS24170 (4997) | 4997..5389 | - | 393 | WP_000340833.1 | plasmid partitioning/stability family protein | - |
| PHA55_RS24175 (5394) | 5394..6365 | - | 972 | WP_001103694.1 | plasmid segregation protein ParM | - |
| PHA55_RS24180 (6594) | 6594..7238 | + | 645 | WP_000633911.1 | AAA family ATPase | - |
| PHA55_RS24185 (7232) | 7232..7507 | + | 276 | WP_000239529.1 | hypothetical protein | - |
| PHA55_RS24190 (7645) | 7645..8454 | - | 810 | WP_161619134.1 | site-specific integrase | - |
| PHA55_RS24195 (8455) | 8455..8760 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| PHA55_RS24200 (8762) | 8762..8980 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| PHA55_RS24205 (9935) | 9935..10138 | - | 204 | Protein_15 | integrase core domain-containing protein | - |
| PHA55_RS24210 (11208) | 11208..11864 | + | 657 | WP_235150763.1 | PIG-L family deacetylase | - |
| PHA55_RS24215 (11875) | 11875..13071 | + | 1197 | WP_161619135.1 | glycosyltransferase family 2 protein | - |
| PHA55_RS24220 (13049) | 13049..13630 | + | 582 | WP_096934554.1 | Bifunctional protein GlmU | VF |
| PHA55_RS24225 (13632) | 13632..14405 | + | 774 | WP_161619136.1 | YaiO family outer membrane beta-barrel protein | - |
| PHA55_RS24230 (15409) | 15409..15651 | + | 243 | WP_096934556.1 | hypothetical protein | - |
| PHA55_RS24235 (15720) | 15720..16181 | - | 462 | Protein_21 | Leukotoxin export protein LtxD | VF |
| PHA55_RS24240 (16477) | 16477..17472 | + | 996 | WP_000246636.1 | hypothetical protein | - |
| PHA55_RS24245 (17476) | 17476..18408 | + | 933 | WP_096934558.1 | S-4TM family putative pore-forming effector | - |
| PHA55_RS24250 (18728) | 18728..18997 | + | 270 | WP_096934559.1 | hypothetical protein | - |
| PHA55_RS24255 (18985) | 18985..19581 | + | 597 | WP_096934560.1 | hypothetical protein | - |
| PHA55_RS24260 (20362) | 20362..21339 | + | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| PHA55_RS24265 (21624) | 21624..22364 | - | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| PHA55_RS24270 (22485) | 22485..22655 | - | 171 | WP_271287557.1 | transcriptional regulator | - |
| PHA55_RS24275 (23092) | 23092..24306 | - | 1215 | WP_271287555.1 | alpha/beta hydrolase | - |
| PHA55_RS24280 (24348) | 24348..25045 | + | 698 | WP_223369285.1 | IS1 family transposase IS1A | Transposase |
| PHA55_RS24285 (25115) | 25115..25936 | + | 822 | Protein_31 | transposase | - |
| PHA55_RS24290 (25921) | 25921..26223 | - | 303 | WP_271287556.1 | omptin family outer membrane protease | - |
| PHA55_RS24295 (26554) | 26554..27489 | - | 936 | WP_161619138.1 | hypothetical protein | - |
| PHA55_RS24300 (27501) | 27501..28010 | - | 510 | WP_161619139.1 | hypothetical protein | - |
| PHA55_RS24305 (27997) | 27997..28689 | - | 693 | WP_033812880.1 | Chaperone protein FaeE | VF |
| PHA55_RS24310 (28682) | 28682..31096 | - | 2415 | WP_161619140.1 | Outer membrane usher protein YraJ | VF |
| PHA55_RS24315 (31211) | 31211..31726 | - | 516 | WP_161619141.1 | hypothetical protein | VF |
| PHA55_RS24320 (31865) | 31865..32134 | - | 270 | WP_161619142.1 | PapB/FocB family fimbrial expression transcriptional regulator | - |
| PHA55_RS24325 (32392) | 32392..33264 | - | 873 | WP_161619143.1 | helix-turn-helix domain-containing protein | - |
| PHA55_RS24330 (34095) | 34095..34843 | + | 749 | Protein_40 | IS3 family transposase ISEc17 | Transposase |
| PHA55_RS24335 (34926) | 34926..35948 | + | 1023 | WP_000255944.1 | IS21 family transposase IS100kyp | Transposase |
| PHA55_RS24340 (35945) | 35945..36727 | + | 783 | WP_001300609.1 | IS21 family transposase IS100kyp | Transposase |
| PHA55_RS24345 (36794) | 36794..37216 | + | 423 | Protein_43 | IS3 family transposase | - |
| PHA55_RS24350 (37388) | 37388..37480 | - | 93 | Protein_44 | hypothetical protein | - |
| PHA55_RS24355 (37479) | 37479..38606 | - | 1128 | WP_249544656.1 | YiiX/YebB-like N1pC/P60 family cysteine hydrolase | - |
| PHA55_RS24360 (38915) | 38915..39193 | - | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| PHA55_RS24365 (39193) | 39193..39462 | - | 270 | WP_000079928.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| PHA55_RS24370 (40376) | 40376..41233 | - | 858 | WP_001401515.1 | incFII family plasmid replication initiator RepA | - |
| PHA55_RS24375 (41226) | 41226..41300 | - | 75 | WP_001375168.1 | RepA leader peptide Tap | - |
| PHA55_RS24380 (41534) | 41534..41791 | - | 258 | WP_000083826.1 | replication regulatory protein RepA | - |
| PHA55_RS24385 (42031) | 42031..42621 | - | 591 | WP_032082916.1 | DUF2726 domain-containing protein | - |
| PHA55_RS24390 (42659) | 42659..42868 | - | 210 | WP_001302200.1 | hemolysin expression modulator Hha | - |
| PHA55_RS24395 (42914) | 42914..43375 | - | 462 | WP_021545193.1 | thermonuclease family protein | - |
| PHA55_RS24400 (43674) | 43674..43832 | - | 159 | WP_021545194.1 | hypothetical protein | - |
| PHA55_RS24405 (43964) | 43964..44524 | - | 561 | WP_000840464.1 | fertility inhibition protein FinO | - |
| PHA55_RS24410 (44627) | 44627..45487 | - | 861 | WP_161619125.1 | Quorum-quenching protein AidA | VF |
| PHA55_RS24415 (45546) | 45546..46286 | - | 741 | WP_161619126.1 | conjugal transfer pilus acetylase TraX | - |
| PHA55_RS24420 (46306) | 46306..51576 | - | 5271 | WP_161619127.1 | Multifunctional conjugation protein TraI | Relaxase |
| PHA55_RS24425 (51658) | 51658..51885 | + | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| PHA55_RS24430 (51885) | 51885..52283 | + | 399 | WP_000911315.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PHA55_RS24435 (52292) | 52292..54445 | - | 2154 | WP_161619128.1 | type IV conjugative transfer system coupling protein TraD | - |
| PHA55_RS24440 (54698) | 54698..55429 | - | 732 | WP_000850422.1 | conjugal transfer complement resistance protein TraT | - |
| PHA55_RS24445 (55454) | 55454..55975 | - | 522 | WP_000632670.1 | conjugal transfer entry exclusion protein TraS | - |
| PHA55_RS24450 (56008) | 56008..58824 | - | 2817 | WP_161619129.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| PHA55_RS24455 (58821) | 58821..60194 | - | 1374 | WP_172949700.1 | conjugal transfer pilus assembly protein TraH | - |
| PHA55_RS24460 (60194) | 60194..60574 | - | 381 | WP_244592005.1 | F-type conjugal transfer protein TrbF | - |
| PHA55_RS24465 (60561) | 60561..60902 | - | 342 | WP_161619130.1 | P-type conjugative transfer protein TrbJ | - |
| PHA55_RS24470 (60832) | 60832..61377 | - | 546 | WP_161619131.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| PHA55_RS24475 (61364) | 61364..61648 | - | 285 | WP_161619132.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| PHA55_RS24480 (61729) | 61729..61914 | + | 186 | WP_250696885.1 | toxin ArtA | - |
| PHA55_RS24485 (62045) | 62045..62392 | - | 348 | WP_001287910.1 | conjugal transfer protein TrbA | - |
| PHA55_RS24490 (62408) | 62408..63151 | - | 744 | WP_001030378.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| PHA55_RS24495 (63144) | 63144..63401 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| PHA55_RS24500 (63428) | 63428..65236 | - | 1809 | WP_097710798.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| PHA55_RS24505 (65233) | 65233..65871 | - | 639 | WP_000777695.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| PHA55_RS24510 (65880) | 65880..66872 | - | 993 | WP_000830183.1 | conjugal transfer pilus assembly protein TraU | - |
| PHA55_RS24515 (66869) | 66869..67501 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| PHA55_RS24520 (67498) | 67498..67884 | - | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| PHA55_RS24525 (67881) | 67881..70508 | - | 2628 | WP_001064245.1 | type IV secretion system protein TraC | - |
| PHA55_RS24530 (70668) | 70668..70889 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| PHA55_RS24535 (71024) | 71024..71539 | - | 516 | WP_000809838.1 | type IV conjugative transfer system lipoprotein TraV | - |
| PHA55_RS24540 (71536) | 71536..71787 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| PHA55_RS24545 (71780) | 71780..72100 | - | 321 | WP_001057286.1 | conjugal transfer protein TrbD | - |
| PHA55_RS24550 (72087) | 72087..72677 | - | 591 | WP_000002787.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| PHA55_RS24555 (72667) | 72667..74094 | - | 1428 | WP_000146685.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| PHA55_RS24560 (74094) | 74094..74822 | - | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| PHA55_RS24565 (74809) | 74809..75375 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| PHA55_RS24570 (75397) | 75397..75708 | - | 312 | WP_000012126.1 | type IV conjugative transfer system protein TraL | - |
| PHA55_RS24575 (75723) | 75723..76088 | - | 366 | WP_000340270.1 | type IV conjugative transfer system pilin TraA | - |
| PHA55_RS24580 (76122) | 76122..76349 | - | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| PHA55_RS24585 (76443) | 76443..77129 | - | 687 | WP_000332492.1 | PAS domain-containing protein | - |
| PHA55_RS24590 (77319) | 77319..77702 | - | 384 | WP_000124981.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| PHA55_RS24595 (78024) | 78024..78626 | + | 603 | WP_000243701.1 | hypothetical protein | VF |
| PHA55_RS24600 (78921) | 78921..79742 | - | 822 | WP_001234475.1 | DUF932 domain-containing protein | - |
| PHA55_RS24605 (79861) | 79861..80147 | - | 287 | Protein_95 | hypothetical protein | - |
| PHA55_RS24610 (80172) | 80172..80378 | - | 207 | WP_040101106.1 | hypothetical protein | - |
| PHA55_RS24615 (80448) | 80448..80745 | + | 298 | Protein_97 | hypothetical protein | - |
| PHA55_RS24620 (81046) | 81046..81171 | - | 126 | WP_096937776.1 | type I toxin-antitoxin system Hok family toxin | - |
| PHA55_RS24625 (81113) | 81113..81262 | - | 150 | Protein_99 | DUF5431 family protein | - |
| - (81269) | 81269..81467 | - | 199 | NuclAT_0 | - | - |
| - (81269) | 81269..81467 | - | 199 | NuclAT_0 | - | - |
| - (81269) | 81269..81467 | - | 199 | NuclAT_0 | - | - |
| - (81269) | 81269..81467 | - | 199 | NuclAT_0 | - | - |
| PHA55_RS24630 (81436) | 81436..82198 | - | 763 | Protein_100 | plasmid SOS inhibition protein A | - |
| PHA55_RS24635 (82195) | 82195..82629 | - | 435 | WP_000845926.1 | conjugation system SOS inhibitor PsiB | - |
| PHA55_RS24640 (82684) | 82684..84642 | - | 1959 | WP_032219150.1 | ParB/RepB/Spo0J family partition protein | - |
| PHA55_RS24645 (84706) | 84706..84939 | - | 234 | WP_000005988.1 | DUF905 family protein | - |
| PHA55_RS24650 (85002) | 85002..85541 | - | 540 | WP_032219151.1 | single-stranded DNA-binding protein | - |
| PHA55_RS24655 (86344) | 86344..86535 | - | 192 | WP_001027497.1 | hypothetical protein | - |
| PHA55_RS24660 (86535) | 86535..86954 | - | 420 | WP_000271711.1 | DUF1380 family protein | - |
| PHA55_RS24665 (87001) | 87001..87426 | - | 426 | WP_001198954.1 | antirestriction protein | - |
| PHA55_RS24670 (87843) | 87843..88613 | - | 771 | WP_178086517.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|