MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP114896 Location: 867311..888985 Organism: Escherichia coli strain CM93 Replicon: chromosome
Accession: NZ_CP114896 Location: 867311..888985 Organism: Escherichia coli strain CM93 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6117_RS04275 (863300) | 863300..863347 | + | 48 | WP_211180494.1 | protein YnaN | - |
| O6117_RS04280 (863361) | 863361..864344 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| O6117_RS04285 (864619) | 864619..864792 | + | 174 | WP_001296046.1 | protein YnaL | - |
| O6117_RS04290 (864822) | 864822..866195 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| O6117_RS04295 (866324) | 866324..867259 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| O6117_RS04300 (867311) | 867311..868546 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| O6117_RS04305 (868548) | 868548..868763 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| - (868867) | 868867..869045 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (868867) | 868867..869045 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (868867) | 868867..869045 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (868867) | 868867..869045 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| O6117_RS04310 (868842) | 868842..869051 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| O6117_RS04315 (869044) | 869044..869238 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| O6117_RS04320 (869295) | 869295..870104 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| O6117_RS04325 (870097) | 870097..872697 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| O6117_RS04330 (872799) | 872799..873074 | - | 276 | WP_000632297.1 | protein RacC | - |
| O6117_RS04335 (873149) | 873149..873319 | - | 171 | WP_001352098.1 | YdaE family protein | - |
| O6117_RS04340 (873319) | 873319..873540 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| O6117_RS04345 (873982) | 873982..874470 | + | 489 | WP_001312793.1 | superinfection exclusion B family protein | - |
| O6117_RS04350 (874467) | 874467..874622 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| O6117_RS04355 (874633) | 874633..874767 | - | 135 | WP_000233809.1 | phage protein | - |
| O6117_RS04360 (875076) | 875076..875552 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| O6117_RS04365 (875676) | 875676..875972 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| O6117_RS04370 (875995) | 875995..876417 | + | 423 | WP_000693797.1 | toxin YdaT family protein | - |
| O6117_RS04375 (876430) | 876430..877287 | + | 858 | WP_000899748.1 | YdaU family protein | - |
| O6117_RS04380 (877294) | 877294..878040 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| O6117_RS04385 (878063) | 878063..878515 | + | 453 | Protein_849 | DUF1627 domain-containing protein | - |
| O6117_RS04390 (878711) | 878711..878896 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| O6117_RS04395 (879093) | 879093..880550 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| O6117_RS04400 (880688) | 880688..880951 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| O6117_RS04405 (880932) | 880932..881291 | + | 360 | WP_000091628.1 | protein YdaY | - |
| O6117_RS04410 (881765) | 881765..882697 | + | 933 | Protein_854 | phage tail length tape measure family protein | - |
| O6117_RS04415 (882700) | 882700..882915 | + | 216 | Protein_855 | Ail/Lom family outer membrane beta-barrel protein | - |
| O6117_RS04420 (883057) | 883057..884037 | - | 981 | WP_000019451.1 | IS5 family transposase ISKpn26 | Transposase |
| O6117_RS04425 (884107) | 884107..884295 | + | 189 | Protein_857 | Ail/Lom family outer membrane beta-barrel protein | - |
| O6117_RS04430 (884360) | 884360..887722 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| O6117_RS04435 (887722) | 887722..888297 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| O6117_RS04440 (888395) | 888395..888985 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| O6117_RS04445 (889302) | 889302..889535 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| O6117_RS04450 (889726) | 889726..890706 | + | 981 | WP_000019403.1 | IS5-like element IS5 family transposase | - |
| O6117_RS04455 (890839) | 890839..890916 | - | 78 | Protein_863 | hypothetical protein | - |
| O6117_RS04460 (891695) | 891695..892129 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| O6117_RS04465 (892270) | 892270..893403 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |