MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP114895 Location: 2052081..2073755 Organism: Escherichia coli strain CM56 Replicon: chromosome
Accession: NZ_CP114895 Location: 2052081..2073755 Organism: Escherichia coli strain CM56 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6106_RS10100 (2048070) | 2048070..2048117 | + | 48 | WP_211180494.1 | protein YnaN | - |
| O6106_RS10105 (2048131) | 2048131..2049114 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| O6106_RS10110 (2049389) | 2049389..2049562 | + | 174 | WP_001296046.1 | protein YnaL | - |
| O6106_RS10115 (2049592) | 2049592..2050965 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| O6106_RS10120 (2051094) | 2051094..2052029 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| O6106_RS10125 (2052081) | 2052081..2053316 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| O6106_RS10130 (2053318) | 2053318..2053533 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| - (2053637) | 2053637..2053815 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (2053637) | 2053637..2053815 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (2053637) | 2053637..2053815 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (2053637) | 2053637..2053815 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| O6106_RS10135 (2053612) | 2053612..2053821 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| O6106_RS10140 (2053814) | 2053814..2054008 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| O6106_RS10145 (2054065) | 2054065..2054874 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| O6106_RS10150 (2054867) | 2054867..2057467 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| O6106_RS10155 (2057569) | 2057569..2057844 | - | 276 | WP_000632297.1 | protein RacC | - |
| O6106_RS10160 (2057919) | 2057919..2058089 | - | 171 | WP_001352098.1 | YdaE family protein | - |
| O6106_RS10165 (2058089) | 2058089..2058310 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| O6106_RS10170 (2058752) | 2058752..2059240 | + | 489 | WP_001312793.1 | superinfection exclusion B family protein | - |
| O6106_RS10175 (2059237) | 2059237..2059392 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| O6106_RS10180 (2059403) | 2059403..2059537 | - | 135 | WP_000233809.1 | phage protein | - |
| O6106_RS10185 (2059846) | 2059846..2060322 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| O6106_RS10190 (2060446) | 2060446..2060742 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| O6106_RS10195 (2060765) | 2060765..2061187 | + | 423 | WP_000693797.1 | toxin YdaT family protein | - |
| O6106_RS10200 (2061200) | 2061200..2062057 | + | 858 | WP_000899748.1 | YdaU family protein | - |
| O6106_RS10205 (2062064) | 2062064..2062810 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| O6106_RS10210 (2062833) | 2062833..2063285 | + | 453 | Protein_1969 | DUF1627 domain-containing protein | - |
| O6106_RS10215 (2063481) | 2063481..2063666 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| O6106_RS10220 (2063863) | 2063863..2065320 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| O6106_RS10225 (2065458) | 2065458..2065721 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| O6106_RS10230 (2065702) | 2065702..2066061 | + | 360 | WP_000091628.1 | protein YdaY | - |
| O6106_RS10235 (2066535) | 2066535..2067467 | + | 933 | Protein_1974 | phage tail length tape measure family protein | - |
| O6106_RS10240 (2067470) | 2067470..2067685 | + | 216 | Protein_1975 | Ail/Lom family outer membrane beta-barrel protein | - |
| O6106_RS10245 (2067827) | 2067827..2068807 | - | 981 | WP_000019451.1 | IS5 family transposase ISKpn26 | Transposase |
| O6106_RS10250 (2068877) | 2068877..2069065 | + | 189 | Protein_1977 | Ail/Lom family outer membrane beta-barrel protein | - |
| O6106_RS10255 (2069130) | 2069130..2072492 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| O6106_RS10260 (2072492) | 2072492..2073067 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| O6106_RS10265 (2073165) | 2073165..2073755 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| O6106_RS10270 (2074072) | 2074072..2074305 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| O6106_RS10275 (2074496) | 2074496..2075476 | + | 981 | WP_000019403.1 | IS5-like element IS5 family transposase | - |
| O6106_RS10280 (2075609) | 2075609..2075686 | - | 78 | Protein_1983 | hypothetical protein | - |
| O6106_RS10285 (2076465) | 2076465..2076899 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| O6106_RS10290 (2077040) | 2077040..2078173 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |