MGE detailed information
MGE type: Prophage MGE length: 100584 bp
Accession: NZ_CP114130 Location: 2443203..2543786 Organism: Escherichia coli strain NJS001 Replicon: chromosome
Accession: NZ_CP114130 Location: 2443203..2543786 Organism: Escherichia coli strain NJS001 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N0F11_RS12045 (2439717) | 2439717..2440463 | + | 747 | WP_000636568.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| N0F11_RS12050 (2440552) | 2440552..2441238 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| N0F11_RS12055 (2441415) | 2441415..2441618 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| N0F11_RS12060 (2441654) | 2441654..2443114 | - | 1461 | WP_000527769.1 | mannitol dehydrogenase family protein | - |
| N0F11_RS12065 (2443203) | 2443203..2444486 | - | 1284 | Protein_2365 | MHS family MFS transporter YdfJ | - |
| N0F11_RS12070 (2444618) | 2444618..2444860 | + | 243 | WP_001120551.1 | DinI-like family protein | - |
| N0F11_RS12075 (2445022) | 2445022..2445663 | - | 642 | WP_001143804.1 | hypothetical protein | VF |
| N0F11_RS12080 (2445745) | 2445745..2446374 | - | 630 | WP_001356599.1 | hypothetical protein | VF |
| N0F11_RS12085 (2446447) | 2446447..2447022 | - | 576 | WP_001131658.1 | hypothetical protein | VF |
| N0F11_RS12090 (2447136) | 2447136..2447405 | - | 270 | WP_001023407.1 | phage tail fiber C-terminal domain-containing protein | - |
| N0F11_RS12095 (2447407) | 2447407..2448630 | - | 1224 | WP_000268860.1 | prophage tail fiber N-terminal domain-containing protein | - |
| N0F11_RS12100 (2448695) | 2448695..2449294 | - | 600 | WP_001230508.1 | Outer membrane protein X | VF |
| N0F11_RS12105 (2449362) | 2449362..2452841 | - | 3480 | WP_269134745.1 | host specificity protein J | - |
| N0F11_RS12110 (2453082) | 2453082..2453660 | - | 579 | WP_001090007.1 | tail assembly protein | - |
| N0F11_RS12115 (2453657) | 2453657..2454400 | - | 744 | WP_078335990.1 | C40 family peptidase | - |
| N0F11_RS12120 (2454411) | 2454411..2455112 | - | 702 | WP_269134746.1 | phage minor tail protein L | - |
| N0F11_RS12125 (2455112) | 2455112..2455441 | - | 330 | WP_000847298.1 | phage tail protein | - |
| N0F11_RS12130 (2455438) | 2455438..2458050 | - | 2613 | WP_000081804.1 | phage tail tape measure protein | - |
| N0F11_RS12135 (2458031) | 2458031..2458444 | - | 414 | WP_000533440.1 | phage tail assembly protein T | - |
| N0F11_RS12140 (2458471) | 2458471..2458893 | - | 423 | WP_000479046.1 | phage minor tail protein G | - |
| N0F11_RS12145 (2458907) | 2458907..2459659 | - | 753 | WP_269134747.1 | Ig domain-containing protein | - |
| N0F11_RS12150 (2459667) | 2459667..2460062 | - | 396 | WP_000683063.1 | phage minor tail U family protein | - |
| N0F11_RS12155 (2460059) | 2460059..2460592 | - | 534 | WP_000975020.1 | phage tail protein | - |
| N0F11_RS12160 (2460607) | 2460607..2460960 | - | 354 | WP_000753016.1 | head-tail joining protein | - |
| N0F11_RS12165 (2460972) | 2460972..2461370 | - | 399 | WP_000158906.1 | DNA-packaging protein FI | - |
| N0F11_RS12170 (2461412) | 2461412..2462436 | - | 1025 | Protein_2386 | major capsid protein | - |
| N0F11_RS12175 (2462492) | 2462492..2462824 | - | 333 | WP_001295978.1 | head decoration protein | - |
| N0F11_RS12180 (2462834) | 2462834..2464153 | - | 1320 | WP_000123254.1 | S49 family peptidase | - |
| N0F11_RS12185 (2464134) | 2464134..2465735 | - | 1602 | WP_001301524.1 | phage portal protein | - |
| N0F11_RS12190 (2465732) | 2465732..2465938 | - | 207 | WP_000198153.1 | gpW family protein | - |
| N0F11_RS12195 (2465935) | 2465935..2467860 | - | 1926 | WP_001027223.1 | phage terminase large subunit family protein | - |
| N0F11_RS12200 (2467835) | 2467835..2468380 | - | 546 | WP_000867498.1 | terminase small subunit | - |
| N0F11_RS12205 (2468767) | 2468767..2468991 | + | 225 | WP_001303940.1 | YlcI/YnfO family protein | - |
| N0F11_RS12210 (2469073) | 2469073..2469387 | - | 315 | WP_001302717.1 | PerC family transcriptional regulator | - |
| N0F11_RS12215 (2469913) | 2469913..2470098 | - | 186 | WP_001208680.1 | Rz1 family lipoprotein | - |
| N0F11_RS12220 (2470321) | 2470321..2470467 | - | 147 | WP_000539795.1 | hypothetical protein | - |
| N0F11_RS12225 (2470467) | 2470467..2471036 | - | 570 | WP_001056806.1 | phage antirepressor N-terminal domain-containing protein | - |
| N0F11_RS12230 (2471300) | 2471300..2472513 | + | 1214 | WP_162829202.1 | IS3 family transposase IS1203 | Transposase |
| N0F11_RS12235 (2472620) | 2472620..2473153 | - | 534 | WP_000992148.1 | lysozyme | - |
| N0F11_RS12240 (2473204) | 2473204..2473548 | - | 345 | WP_000731240.1 | YdfR family protein | - |
| N0F11_RS12245 (2473553) | 2473553..2473768 | - | 216 | WP_024180155.1 | class II holin family protein | - |
| N0F11_RS12250 (2474208) | 2474208..2476058 | - | 1851 | WP_000023185.1 | SASA family carbohydrate esterase | - |
| N0F11_RS12255 (2476035) | 2476035..2476177 | + | 143 | Protein_2403 | hypothetical protein | - |
| N0F11_RS12260 (2476372) | 2476372..2476539 | - | 168 | WP_000216636.1 | DUF3927 family protein | - |
| N0F11_RS12265 (2476536) | 2476536..2476967 | - | 432 | WP_001302123.1 | tellurite resistance protein | - |
| N0F11_RS12280 (2477418) | 2477418..2478131 | - | 714 | WP_000301797.1 | helix-turn-helix domain-containing protein | - |
| N0F11_RS12285 (2478267) | 2478267..2478464 | - | 198 | WP_000917763.1 | hypothetical protein | - |
| N0F11_RS12290 (2478689) | 2478689..2479243 | - | 555 | WP_000640035.1 | DUF1133 family protein | - |
| N0F11_RS12295 (2479306) | 2479306..2479611 | - | 306 | WP_001217444.1 | RusA family crossover junction endodeoxyribonuclease | - |
| N0F11_RS12300 (2479624) | 2479624..2480673 | - | 1050 | WP_001265229.1 | DUF968 domain-containing protein | - |
| N0F11_RS12305 (2480675) | 2480675..2480947 | - | 273 | WP_000191872.1 | hypothetical protein | - |
| N0F11_RS12310 (2481069) | 2481069..2481413 | - | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| N0F11_RS12315 (2481533) | 2481533..2481688 | - | 156 | WP_000813258.1 | Hok/Gef family protein | Toxin Detail |
| N0F11_RS12320 (2481979) | 2481979..2482536 | - | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| N0F11_RS12325 (2482538) | 2482538..2482756 | - | 219 | WP_000683609.1 | DUF4014 family protein | - |
| N0F11_RS12330 (2482884) | 2482884..2483195 | - | 312 | WP_001289673.1 | hypothetical protein | - |
| N0F11_RS12335 (2483188) | 2483188..2483415 | - | 228 | WP_000699809.1 | hypothetical protein | - |
| N0F11_RS12340 (2483412) | 2483412..2483693 | - | 282 | WP_000603384.1 | DNA-binding protein | - |
| N0F11_RS12345 (2483726) | 2483726..2484442 | - | 717 | WP_000450627.1 | DUF1627 domain-containing protein | - |
| N0F11_RS12350 (2484476) | 2484476..2484937 | - | 462 | WP_000139447.1 | replication protein P | - |
| N0F11_RS12355 (2484930) | 2484930..2485973 | - | 1044 | WP_001262402.1 | DnaT-like ssDNA-binding domain-containing protein | - |
| N0F11_RS12360 (2486042) | 2486042..2486467 | - | 426 | WP_000693878.1 | toxin YdaT family protein | - |
| N0F11_RS12365 (2486451) | 2486451..2486693 | - | 243 | WP_000747948.1 | Cro/CI family transcriptional regulator | - |
| N0F11_RS12370 (2487085) | 2487085..2487423 | + | 339 | WP_001416688.1 | S24 family peptidase | - |
| N0F11_RS12375 (2487716) | 2487716..2487868 | + | 153 | WP_000380316.1 | DUF1391 family protein | - |
| N0F11_RS12380 (2487880) | 2487880..2488518 | + | 639 | WP_000394548.1 | hypothetical protein | - |
| N0F11_RS12385 (2488519) | 2488519..2488728 | - | 210 | WP_001133037.1 | hypothetical protein | - |
| N0F11_RS12390 (2489293) | 2489293..2489481 | + | 189 | WP_000449175.1 | cell division inhibition protein DicB | - |
| N0F11_RS12395 (2489478) | 2489478..2489666 | + | 189 | WP_000199475.1 | DUF1482 family protein | - |
| N0F11_RS12400 (2489759) | 2489759..2490997 | + | 1239 | Protein_2430 | exonuclease | - |
| N0F11_RS12405 (2490985) | 2490985..2491536 | + | 552 | Protein_2431 | Putative defective protein IntQ ; Integrase | Integrase |
| N0F11_RS12410 (2491714) | 2491714..2491956 | + | 243 | WP_001120551.1 | DinI-like family protein | - |
| N0F11_RS12415 (2492006) | 2492006..2492824 | - | 819 | Protein_2433 | IS256 family transposase IS1414 | Transposase |
| N0F11_RS12420 (2492919) | 2492919..2493299 | + | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| N0F11_RS12425 (2493296) | 2493296..2493643 | + | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| N0F11_RS12430 (2493693) | 2493693..2495232 | + | 1540 | Protein_2436 | IS66 family transposase ISEc8 | Transposase |
| N0F11_RS12435 (2495270) | 2495270..2495665 | - | 396 | Protein_2437 | IS256 family transposase ISEic2 | Transposase |
| N0F11_RS12440 (2495815) | 2495815..2496465 | - | 651 | WP_001121225.1 | hypothetical protein | VF |
| N0F11_RS12445 (2497176) | 2497176..2497751 | - | 576 | WP_001131642.1 | hypothetical protein | VF |
| N0F11_RS12450 (2497865) | 2497865..2498134 | - | 270 | WP_001023362.1 | phage tail fiber C-terminal domain-containing protein | - |
| N0F11_RS12455 (2498136) | 2498136..2499357 | - | 1222 | Protein_2441 | prophage tail fiber N-terminal domain-containing protein | - |
| N0F11_RS12460 (2499422) | 2499422..2500021 | - | 600 | WP_001230508.1 | Outer membrane protein X | VF |
| N0F11_RS12465 (2500089) | 2500089..2503567 | - | 3479 | Protein_2443 | host specificity protein J | - |
| N0F11_RS12470 (2503830) | 2503830..2504192 | - | 363 | Protein_2444 | phage minor tail protein L | - |
| N0F11_RS12475 (2504192) | 2504192..2504533 | - | 342 | WP_000807954.1 | phage tail protein | - |
| N0F11_RS12480 (2504526) | 2504526..2507604 | - | 3079 | Protein_2446 | phage tail tape measure protein | - |
| N0F11_RS12485 (2507657) | 2507657..2507866 | - | 210 | WP_001453698.1 | DUF4035 domain-containing protein | - |
| N0F11_RS12490 (2507962) | 2507962..2508336 | - | 375 | WP_001030063.1 | phage tail assembly chaperone | - |
| N0F11_RS12495 (2508342) | 2508342..2509058 | - | 717 | WP_001275508.1 | major tail subunit | - |
| N0F11_RS12500 (2509117) | 2509117..2509461 | - | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| N0F11_RS12505 (2509458) | 2509458..2509904 | - | 447 | WP_000573374.1 | HK97 gp10 family phage protein | - |
| N0F11_RS12510 (2509901) | 2509901..2510251 | - | 351 | WP_001007901.1 | phage head closure protein | - |
| N0F11_RS12515 (2510261) | 2510261..2510587 | - | 327 | WP_000126019.1 | head-tail connector protein | - |
| N0F11_RS12520 (2510584) | 2510584..2513168 | - | 2585 | Protein_2454 | phage portal protein | - |
| N0F11_RS12525 (2513114) | 2513114..2513335 | - | 222 | WP_001063099.1 | hypothetical protein | - |
| N0F11_RS12530 (2513380) | 2513380..2515317 | - | 1938 | WP_000173030.1 | phage major capsid protein | - |
| N0F11_RS12535 (2515381) | 2515381..2517043 | - | 1663 | Protein_2457 | terminase large subunit | - |
| N0F11_RS12540 (2517040) | 2517040..2517605 | - | 566 | Protein_2458 | terminase small subunit | - |
| N0F11_RS12545 (2517895) | 2517895..2518260 | - | 366 | WP_000279786.1 | HNH endonuclease | - |
| N0F11_RS12550 (2518302) | 2518302..2518529 | + | 228 | Protein_2460 | DUF3950 domain-containing protein | - |
| N0F11_RS12555 (2518892) | 2518892..2519358 | - | 467 | Protein_2461 | lysis protein | - |
| N0F11_RS12560 (2519366) | 2519366..2519512 | - | 147 | WP_000539792.1 | hypothetical protein | - |
| N0F11_RS12565 (2519512) | 2519512..2520081 | - | 570 | WP_001056806.1 | phage antirepressor N-terminal domain-containing protein | - |
| N0F11_RS12570 (2520352) | 2520352..2520885 | - | 534 | WP_000992137.1 | lysozyme | - |
| N0F11_RS12575 (2520936) | 2520936..2521280 | - | 345 | WP_000731259.1 | YdfR family protein | - |
| N0F11_RS12580 (2521285) | 2521285..2521500 | - | 216 | WP_024180155.1 | class II holin family protein | - |
| N0F11_RS12585 (2521939) | 2521939..2523789 | - | 1851 | WP_000023202.1 | SASA family carbohydrate esterase | - |
| N0F11_RS12590 (2523766) | 2523766..2523909 | + | 144 | Protein_2468 | hypothetical protein | - |
| N0F11_RS12595 (2524104) | 2524104..2524271 | - | 168 | WP_000216653.1 | DUF3927 family protein | - |
| N0F11_RS12600 (2524268) | 2524268..2524696 | - | 429 | WP_001303509.1 | tellurite resistance protein | - |
| N0F11_RS12620 (2525339) | 2525339..2526028 | - | 690 | WP_001059381.1 | bacteriophage antitermination protein Q | - |
| N0F11_RS12625 (2526025) | 2526025..2526384 | - | 360 | WP_001217455.1 | RusA family crossover junction endodeoxyribonuclease | - |
| N0F11_RS12630 (2526397) | 2526397..2527446 | - | 1050 | WP_001265161.1 | DUF968 domain-containing protein | - |
| N0F11_RS12635 (2527448) | 2527448..2527726 | - | 279 | WP_012779366.1 | hypothetical protein | - |
| N0F11_RS12640 (2527894) | 2527894..2528049 | - | 156 | WP_001303917.1 | type I toxin-antitoxin system toxin HokD | - |
| N0F11_RS12645 (2528295) | 2528295..2528399 | - | 105 | WP_001278450.1 | hypothetical protein | - |
| N0F11_RS12650 (2528515) | 2528515..2529099 | - | 585 | WP_000206793.1 | DUF551 domain-containing protein | - |
| N0F11_RS12655 (2529156) | 2529156..2529551 | - | 396 | WP_001118159.1 | DUF977 family protein | - |
| N0F11_RS12660 (2529567) | 2529567..2530336 | - | 770 | Protein_2479 | DUF1627 domain-containing protein | - |
| N0F11_RS12665 (2530362) | 2530362..2531102 | - | 741 | WP_000788938.1 | ATP-binding protein | - |
| N0F11_RS12670 (2531109) | 2531109..2532071 | - | 963 | WP_000095669.1 | helix-turn-helix domain-containing protein | - |
| N0F11_RS12675 (2532094) | 2532094..2532519 | - | 426 | WP_000693943.1 | toxin YdaT family protein | - |
| N0F11_RS12680 (2532516) | 2532516..2532818 | - | 303 | WP_000172738.1 | transcriptional regulator | - |
| N0F11_RS12685 (2532916) | 2532916..2533287 | + | 372 | WP_001169686.1 | hypothetical protein | - |
| N0F11_RS12690 (2533308) | 2533308..2533499 | + | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| N0F11_RS12695 (2533501) | 2533501..2533779 | + | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| N0F11_RS12700 (2534132) | 2534132..2534431 | + | 300 | WP_001240334.1 | hypothetical protein | - |
| N0F11_RS12705 (2534503) | 2534503..2534721 | + | 219 | WP_001171930.1 | protein YdfC | - |
| N0F11_RS12710 (2535287) | 2535287..2535475 | + | 189 | WP_000449192.1 | cell division inhibition protein DicB | - |
| N0F11_RS12715 (2535472) | 2535472..2535666 | + | 195 | WP_269134748.1 | DUF1482 family protein | - |
| N0F11_RS12720 (2535759) | 2535759..2538230 | + | 2472 | WP_269134749.1 | exonuclease | - |
| N0F11_RS12725 (2538295) | 2538295..2538543 | + | 249 | WP_000113189.1 | excisionase | - |
| N0F11_RS12730 (2538521) | 2538521..2539651 | + | 1131 | WP_000113674.1 | hypothetical protein ; Integrase | Integrase |
| N0F11_RS12735 (2539697) | 2539697..2540335 | - | 639 | WP_000737224.1 | outer membrane protein OmpW | - |
| N0F11_RS12740 (2540575) | 2540575..2540664 | + | 90 | Protein_2495 | YkgJ family cysteine cluster protein | - |
| N0F11_RS12745 (2540692) | 2540692..2541435 | + | 744 | WP_000028544.1 | YciC family protein | - |
| N0F11_RS12750 (2541465) | 2541465..2542004 | + | 540 | WP_000808667.1 | septation protein A | - |
| N0F11_RS12755 (2542109) | 2542109..2542507 | + | 399 | WP_000108158.1 | acyl-CoA thioester hydrolase YciA | - |
| N0F11_RS12760 (2542547) | 2542547..2543266 | - | 720 | WP_001302286.1 | TonB system transport protein TonB | - |
| N0F11_RS12765 (2543490) | 2543490..2543786 | + | 297 | WP_000967595.1 | YciI family protein | - |
| N0F11_RS12770 (2544087) | 2544087..2545340 | + | 1254 | WP_000020078.1 | voltage-gated potassium channel protein | - |
| N0F11_RS12775 (2545395) | 2545395..2545568 | - | 174 | WP_001309467.1 | YciY family protein | - |
| N0F11_RS12780 (2545711) | 2545711..2547171 | + | 1461 | WP_000214510.1 | cardiolipin synthase | - |
| N0F11_RS12785 (2547206) | 2547206..2547535 | + | 330 | WP_000366959.1 | HI1450 family dsDNA-mimic protein | - |
| N0F11_RS12790 (2547588) | 2547588..2548592 | - | 1005 | WP_000994905.1 | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli O157:H7 str. Sakai | Prophage | TA1008 | NC_002695 | 2157035..2254487 | 0.007 |