MGE detailed information
MGE type: Prophage MGE length: 93418 bp
Accession: NZ_CP113027 Location: 1470412..1563829 Organism: Staphylococcus aureus strain Syndra Replicon: chromosome
Accession: NZ_CP113027 Location: 1470412..1563829 Organism: Staphylococcus aureus strain Syndra Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OS083_RS07675 (1465890) | 1465890..1466393 | - | 504 | WP_000737983.1 | signal transduction protein TRAP | - |
| OS083_RS07680 (1466579) | 1466579..1466665 | + | 87 | WP_031875110.1 | hypothetical protein | - |
| OS083_RS07685 (1466655) | 1466655..1467692 | + | 1038 | WP_000233540.1 | uroporphyrinogen decarboxylase | - |
| OS083_RS07690 (1467750) | 1467750..1468673 | + | 924 | WP_000162888.1 | ferrochelatase | - |
| OS083_RS07695 (1468697) | 1468697..1470097 | + | 1401 | WP_000167528.1 | protoporphyrinogen oxidase | - |
| OS083_RS07700 (1470412) | 1470412..1470966 | + | 555 | WP_000132890.1 | alpha/beta hydrolase | - |
| OS083_RS07745 (1472244) | 1472244..1473293 | - | 1050 | WP_000146088.1 | IS91 family transposase ISCARN110 | Transposase |
| OS083_RS07750 (1473355) | 1473355..1473870 | - | 516 | WP_031790084.1 | hypothetical protein | - |
| OS083_RS07755 (1473888) | 1473888..1474349 | - | 462 | WP_267814154.1 | toxin | Toxin Detail |
| OS083_RS07760 (1474362) | 1474362..1474685 | - | 324 | WP_001260487.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| OS083_RS07765 (1474849) | 1474849..1474977 | + | 129 | WP_267825020.1 | helix-turn-helix transcriptional regulator | - |
| OS083_RS07770 (1475111) | 1475111..1475554 | + | 444 | WP_000435360.1 | hypothetical protein | - |
| OS083_RS07775 (1475569) | 1475569..1475709 | + | 141 | WP_000939495.1 | hypothetical protein | - |
| OS083_RS07780 (1475702) | 1475702..1475911 | - | 210 | WP_000772137.1 | hypothetical protein | - |
| OS083_RS07785 (1475968) | 1475968..1476681 | + | 714 | WP_031925041.1 | BRO family protein | - |
| OS083_RS07790 (1476694) | 1476694..1476903 | + | 210 | WP_000455727.1 | hypothetical protein | - |
| OS083_RS07795 (1476917) | 1476917..1477078 | + | 162 | WP_000048124.1 | DUF1270 family protein | - |
| OS083_RS07800 (1477167) | 1477167..1477484 | + | 318 | WP_000829613.1 | hypothetical protein | - |
| OS083_RS07805 (1477489) | 1477489..1477749 | + | 261 | WP_001556704.1 | DUF1108 family protein | - |
| OS083_RS07810 (1477762) | 1477762..1478298 | + | 537 | WP_001004336.1 | host-nuclease inhibitor Gam family protein | - |
| OS083_RS07815 (1478299) | 1478299..1478949 | + | 651 | WP_000840496.1 | ERF family protein | - |
| OS083_RS07820 (1478946) | 1478946..1479389 | + | 444 | WP_001099007.1 | single-stranded DNA-binding protein | - |
| OS083_RS07825 (1479401) | 1479401..1480075 | + | 675 | WP_031928974.1 | putative HNHc nuclease | - |
| OS083_RS07830 (1480181) | 1480181..1481038 | - | 858 | WP_000371250.1 | DUF4393 domain-containing protein | - |
| OS083_RS07835 (1481103) | 1481103..1481873 | + | 771 | WP_000190224.1 | conserved phage C-terminal domain-containing protein | - |
| OS083_RS07840 (1481883) | 1481883..1482662 | + | 780 | WP_103143576.1 | IS21 family transposase ISRme9 | Transposase |
| OS083_RS07845 (1482656) | 1482656..1482817 | + | 162 | WP_000237153.1 | hypothetical protein | - |
| OS083_RS07850 (1482830) | 1482830..1483051 | + | 222 | WP_001123688.1 | DUF3269 family protein | - |
| OS083_RS07855 (1483061) | 1483061..1483486 | + | 426 | WP_000451862.1 | DNA N-6-adenine-methyltransferase | - |
| OS083_RS07860 (1483483) | 1483483..1483887 | + | 405 | WP_021758092.1 | DUF1064 domain-containing protein | - |
| OS083_RS07865 (1483892) | 1483892..1484077 | + | 186 | WP_001187236.1 | DUF3113 family protein | - |
| OS083_RS07870 (1484078) | 1484078..1484434 | + | 357 | WP_000029366.1 | SA1788 family PVL leukocidin-associated protein | - |
| OS083_RS07875 (1484438) | 1484438..1484680 | + | 243 | WP_000131388.1 | phi PVL orf 51-like protein | - |
| OS083_RS07880 (1484695) | 1484695..1484946 | + | 252 | WP_001065099.1 | DUF1024 family protein | Toxin Detail |
| OS083_RS07885 (1484936) | 1484936..1485109 | + | 174 | WP_000028424.1 | hypothetical protein | Antitoxin Detail |
| OS083_RS07890 (1485110) | 1485110..1485391 | + | 282 | WP_000454994.1 | hypothetical protein | - |
| OS083_RS07895 (1485392) | 1485392..1485553 | + | 162 | WP_000889683.1 | hypothetical protein | - |
| OS083_RS07900 (1485568) | 1485568..1486074 | + | 507 | WP_001061834.1 | dUTPase | - |
| OS083_RS07905 (1486111) | 1486111..1486357 | + | 247 | Protein_1436 | hypothetical protein | - |
| OS083_RS07910 (1486354) | 1486354..1486506 | + | 153 | WP_038412600.1 | DUF1381 domain-containing protein | - |
| OS083_RS07915 (1486499) | 1486499..1486957 | + | 459 | WP_001129214.1 | hypothetical protein | - |
| OS083_RS07920 (1486970) | 1486970..1487143 | + | 174 | WP_000595257.1 | transcriptional activator RinB | - |
| OS083_RS07925 (1487144) | 1487144..1487545 | + | 402 | WP_000286968.1 | hypothetical protein | - |
| OS083_RS07930 (1487900) | 1487900..1488394 | + | 495 | WP_000594088.1 | terminase small subunit | - |
| OS083_RS07935 (1488387) | 1488387..1489610 | + | 1224 | WP_001037578.1 | PBSX family phage terminase large subunit | - |
| OS083_RS07940 (1489607) | 1489607..1491031 | + | 1425 | WP_000177422.1 | phage portal protein | - |
| OS083_RS07945 (1491000) | 1491000..1491953 | + | 954 | WP_000184133.1 | phage head morphogenesis protein | - |
| OS083_RS07950 (1491955) | 1491955..1492161 | + | 207 | WP_000346033.1 | hypothetical protein | - |
| OS083_RS07955 (1492265) | 1492265..1492849 | + | 585 | WP_001019219.1 | DUF4355 domain-containing protein | - |
| OS083_RS07960 (1492866) | 1492866..1493780 | + | 915 | WP_000235168.1 | phage major capsid protein | - |
| OS083_RS07965 (1493792) | 1493792..1493935 | + | 144 | WP_000002931.1 | hypothetical protein | - |
| OS083_RS07970 (1493941) | 1493941..1494291 | + | 351 | WP_000177351.1 | phage head-tail adapter protein | - |
| OS083_RS07975 (1494303) | 1494303..1494638 | + | 336 | WP_000483041.1 | phage head closure protein | - |
| OS083_RS07980 (1494625) | 1494625..1495038 | + | 414 | WP_001151330.1 | HK97 gp10 family phage protein | - |
| OS083_RS07985 (1495051) | 1495051..1495476 | + | 426 | WP_000270192.1 | DUF3168 domain-containing protein | - |
| OS083_RS07990 (1495477) | 1495477..1496034 | + | 558 | WP_000057582.1 | tail protein | - |
| OS083_RS07995 (1496101) | 1496101..1496607 | + | 507 | WP_000134337.1 | tail assembly chaperone | - |
| OS083_RS08000 (1496652) | 1496652..1496936 | + | 285 | WP_000880587.1 | hypothetical protein | - |
| OS083_RS08005 (1496940) | 1496940..1500083 | + | 3144 | WP_267825034.1 | terminase | - |
| OS083_RS08010 (1500098) | 1500098..1501039 | + | 942 | WP_000560181.1 | phage tail family protein | - |
| OS083_RS08015 (1501050) | 1501050..1502936 | + | 1887 | WP_038412588.1 | SGNH/GDSL hydrolase family protein | - |
| OS083_RS08020 (1502949) | 1502949..1504847 | + | 1899 | WP_038412586.1 | hypothetical protein | - |
| OS083_RS08025 (1504847) | 1504847..1506670 | + | 1824 | WP_038412584.1 | phage baseplate upper protein | - |
| OS083_RS08030 (1506670) | 1506670..1507047 | + | 378 | WP_000705896.1 | DUF2977 domain-containing protein | - |
| OS083_RS08035 (1507051) | 1507051..1507224 | + | 174 | WP_000782200.1 | XkdX family protein | - |
| OS083_RS08040 (1507264) | 1507264..1507563 | + | 300 | WP_000466778.1 | DUF2951 domain-containing protein | - |
| OS083_RS08045 (1507700) | 1507700..1509574 | + | 1875 | WP_000524040.1 | Bifunctional autolysin | VF |
| OS083_RS08050 (1509587) | 1509587..1510825 | + | 1239 | WP_038412581.1 | BppU family phage baseplate upper protein | - |
| OS083_RS08055 (1510830) | 1510830..1511225 | + | 396 | WP_038412579.1 | hypothetical protein | - |
| OS083_RS08060 (1511281) | 1511281..1511718 | + | 438 | WP_038412577.1 | phage holin | - |
| OS083_RS08065 (1511699) | 1511699..1513144 | + | 1446 | WP_038412575.1 | SH3 domain-containing protein | - |
| OS083_RS08070 (1514485) | 1514485..1514695 | - | 211 | Protein_1469 | hypothetical protein | - |
| OS083_RS08075 (1515156) | 1515156..1515944 | - | 789 | WP_000206347.1 | DUF1829 domain-containing protein | - |
| OS083_RS08080 (1515981) | 1515981..1516247 | - | 267 | Protein_1471 | hypothetical protein | - |
| OS083_RS08085 (1516338) | 1516338..1517629 | + | 1292 | Protein_1472 | IS21 family transposase IS232 | Transposase |
| OS083_RS08090 (1517622) | 1517622..1518383 | + | 762 | WP_001066124.1 | IS21 family transposase IS232 | Transposase |
| OS083_RS08095 (1518685) | 1518685..1519020 | + | 336 | Protein_1474 | SH3 domain-containing protein | - |
| OS083_RS08100 (1519115) | 1519115..1519276 | - | 162 | Protein_1475 | chemotaxis protein | - |
| OS083_RS08105 (1519323) | 1519323..1520360 | - | 1038 | WP_000857191.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| OS083_RS08110 (1520419) | 1520419..1520883 | - | 465 | WP_000825947.1 | hypothetical protein | - |
| OS083_RS08115 (1520983) | 1520983..1521165 | - | 183 | WP_000705248.1 | hypothetical protein | - |
| OS083_RS08120 (1521369) | 1521369..1521710 | - | 342 | WP_000591749.1 | hypothetical protein | - |
| OS083_RS08125 (1521716) | 1521716..1522648 | - | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| OS083_RS08130 (1522664) | 1522664..1523377 | - | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| OS083_RS08135 (1523340) | 1523340..1523513 | + | 174 | WP_001801500.1 | hypothetical protein | - |
| OS083_RS08140 (1523510) | 1523510..1523773 | + | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| OS083_RS08145 (1523789) | 1523789..1524004 | + | 216 | WP_001025404.1 | DUF2829 domain-containing protein | - |
| OS083_RS08150 (1523993) | 1523993..1524322 | - | 330 | WP_000128907.1 | hypothetical protein | - |
| OS083_RS08155 (1524373) | 1524373..1525125 | + | 753 | WP_001148606.1 | phage antirepressor KilAC domain-containing protein | - |
| OS083_RS08160 (1525142) | 1525142..1525336 | + | 195 | WP_000388066.1 | hypothetical protein | - |
| OS083_RS08165 (1525367) | 1525367..1525465 | + | 99 | Protein_1488 | hypothetical protein | - |
| OS083_RS08170 (1525615) | 1525615..1525935 | + | 321 | WP_001120935.1 | DUF771 domain-containing protein | - |
| OS083_RS08175 (1525932) | 1525932..1526093 | + | 162 | WP_000066025.1 | DUF1270 domain-containing protein | - |
| OS083_RS08180 (1526186) | 1526186..1526488 | + | 303 | WP_071665634.1 | DUF2482 family protein | - |
| OS083_RS08185 (1526493) | 1526493..1526753 | + | 261 | WP_000291510.1 | DUF1108 family protein | - |
| OS083_RS08190 (1526762) | 1526762..1527025 | + | 264 | WP_071665633.1 | hypothetical protein | - |
| OS083_RS08195 (1527034) | 1527034..1528977 | + | 1944 | WP_000700555.1 | AAA family ATPase | - |
| OS083_RS08200 (1528979) | 1528979..1529899 | + | 921 | WP_000138475.1 | recombinase RecT | - |
| OS083_RS08205 (1529980) | 1529980..1530597 | + | 618 | WP_071665632.1 | MBL fold metallo-hydrolase | - |
| OS083_RS08210 (1530598) | 1530598..1531068 | + | 471 | WP_267813983.1 | single-stranded DNA-binding protein | - |
| OS083_RS08215 (1531098) | 1531098..1531991 | + | 894 | WP_000148321.1 | DnaD domain-containing protein | - |
| OS083_RS08220 (1531998) | 1531998..1532216 | + | 219 | WP_000338530.1 | hypothetical protein | - |
| OS083_RS08225 (1532225) | 1532225..1532627 | + | 403 | Protein_1500 | RusA family crossover junction endodeoxyribonuclease | - |
| OS083_RS08230 (1532640) | 1532640..1533008 | + | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| OS083_RS08235 (1533012) | 1533012..1533254 | + | 243 | WP_267813985.1 | SAV1978 family virulence-associated passenger protein | - |
| OS083_RS08240 (1533269) | 1533269..1533523 | + | 255 | WP_001065097.1 | DUF1024 family protein | - |
| OS083_RS08245 (1533510) | 1533510..1533680 | + | 171 | WP_000714403.1 | hypothetical protein | - |
| OS083_RS08250 (1533673) | 1533673..1534209 | + | 537 | WP_001066448.1 | dUTP diphosphatase | - |
| OS083_RS08255 (1534246) | 1534246..1534491 | + | 246 | WP_001282074.1 | hypothetical protein | - |
| OS083_RS08260 (1534488) | 1534488..1534694 | + | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| OS083_RS08265 (1534691) | 1534691..1535077 | + | 387 | WP_000592207.1 | hypothetical protein | - |
| OS083_RS08270 (1535074) | 1535074..1535223 | + | 150 | WP_000595264.1 | transcriptional activator RinB | - |
| OS083_RS08275 (1535223) | 1535223..1535423 | + | 201 | WP_000265043.1 | DUF1514 family protein | - |
| OS083_RS08280 (1535451) | 1535451..1535867 | + | 417 | WP_000590122.1 | hypothetical protein | - |
| OS083_RS08285 (1536099) | 1536099..1536398 | + | 300 | WP_000988336.1 | HNH endonuclease | - |
| OS083_RS08290 (1536528) | 1536528..1536872 | + | 345 | WP_000402904.1 | hypothetical protein | - |
| OS083_RS08295 (1536869) | 1536869..1538530 | + | 1662 | WP_000625088.1 | terminase large subunit | - |
| OS083_RS08300 (1538546) | 1538546..1539733 | + | 1188 | WP_267813986.1 | phage portal protein | - |
| OS083_RS08305 (1539717) | 1539717..1540454 | + | 738 | WP_000642727.1 | Clp protease ClpP | - |
| OS083_RS08310 (1540478) | 1540478..1541623 | + | 1146 | WP_000154559.1 | phage major capsid protein | - |
| OS083_RS08315 (1541643) | 1541643..1541926 | + | 284 | Protein_1518 | hypothetical protein | - |
| OS083_RS08320 (1541916) | 1541916..1542200 | + | 285 | WP_000150938.1 | phage head-tail connector protein | - |
| OS083_RS08325 (1542184) | 1542184..1542546 | + | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| OS083_RS08330 (1542543) | 1542543..1542947 | + | 405 | WP_000114226.1 | HK97 gp10 family phage protein | - |
| OS083_RS08335 (1542944) | 1542944..1543351 | + | 408 | WP_000565498.1 | hypothetical protein | - |
| OS083_RS08340 (1543352) | 1543352..1543996 | + | 645 | WP_000268734.1 | phage tail protein | - |
| OS083_RS08345 (1544032) | 1544032..1544262 | + | 231 | Protein_1524 | Ig-like domain-containing protein | - |
| OS083_RS08350 (1544312) | 1544312..1544662 | + | 351 | WP_001096355.1 | hypothetical protein | - |
| OS083_RS08355 (1544716) | 1544716..1544850 | + | 135 | WP_000364140.1 | hypothetical protein | - |
| OS083_RS08360 (1544907) | 1544907..1549436 | + | 4530 | WP_001796452.1 | phage tail tape measure protein | - |
| OS083_RS08365 (1549433) | 1549433..1550917 | + | 1485 | WP_000567408.1 | phage tail family protein | - |
| OS083_RS08370 (1550933) | 1550933..1554718 | + | 3786 | WP_000582169.1 | phage tail spike protein | - |
| OS083_RS08375 (1554708) | 1554708..1554860 | + | 153 | WP_000654329.1 | hypothetical protein | - |
| OS083_RS08380 (1554907) | 1554907..1555194 | + | 288 | WP_001040255.1 | hypothetical protein | - |
| OS083_RS08385 (1555250) | 1555250..1555624 | + | 375 | WP_000340977.1 | hypothetical protein | - |
| OS083_RS08390 (1556045) | 1556045..1556818 | + | 774 | WP_025174055.1 | Enterotoxin type E | VF |
| OS083_RS08395 (1557021) | 1557021..1557197 | + | 177 | WP_011447039.1 | type I toxin-antitoxin system toxin PepG1 | Toxin Detail |
| - (1557189) | 1557189..1557328 | - | 140 | NuclAT_0 | - | Antitoxin Detail |
| - (1557189) | 1557189..1557328 | - | 140 | NuclAT_0 | - | Antitoxin Detail |
| - (1557189) | 1557189..1557328 | - | 140 | NuclAT_0 | - | Antitoxin Detail |
| - (1557189) | 1557189..1557328 | - | 140 | NuclAT_0 | - | Antitoxin Detail |
| OS083_RS08400 (1557250) | 1557250..1557357 | - | 108 | WP_031762631.1 | hypothetical protein | - |
| OS083_RS08405 (1557409) | 1557409..1557663 | + | 255 | WP_000611512.1 | phage holin | - |
| OS083_RS08410 (1557675) | 1557675..1558430 | + | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| OS083_RS08415 (1558621) | 1558621..1559112 | + | 492 | WP_000920038.1 | Staphylokinase | VF |
| OS083_RS08420 (1559763) | 1559763..1560098 | + | 336 | Protein_1539 | SH3 domain-containing protein | - |
| OS083_RS08425 (1560609) | 1560609..1560959 | + | 351 | WP_000702263.1 | Staphylococcal complement inhibitor | VF |
| OS083_RS08430 (1561012) | 1561012..1561272 | - | 261 | WP_001791826.1 | hypothetical protein | - |
| OS083_RS08435 (1561583) | 1561583..1561762 | - | 180 | WP_000669791.1 | hypothetical protein | - |
| OS083_RS08440 (1562167) | 1562167..1562724 | + | 558 | Protein_1543 | restriction endonuclease subunit S | - |
| OS083_RS08445 (1562975) | 1562975..1563829 | + | 855 | WP_001044434.1 | M23 family metallopeptidase | - |
| OS083_RS08450 (1563889) | 1563889..1565136 | - | 1248 | Protein_1545 | polysaccharide lyase beta-sandwich domain-containing protein | - |
| OS083_RS08455 (1565310) | 1565310..1566205 | + | 896 | Protein_1546 | tyrosine-type recombinase/integrase | - |
| OS083_RS08460 (1566704) | 1566704..1568410 | + | 1707 | WP_000533463.1 | AAA family ATPase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|