MGE detailed information
MGE type: Genomic_island MGE length: 33219 bp
Accession: NZ_CP110999 Location: 953306..986524 Organism: Escherichia coli strain J53-p133 Replicon: chromosome
Accession: NZ_CP110999 Location: 953306..986524 Organism: Escherichia coli strain J53-p133 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ORI88_RS04650 (949490) | 949490..950758 | - | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| ORI88_RS04655 (950778) | 950778..951755 | - | 978 | WP_000993126.1 | glutarate dioxygenase GlaH | - |
| ORI88_RS04660 (952091) | 952091..954343 | - | 2253 | Protein_908 | alpha-amylase family glycosyl hydrolase | - |
| ORI88_RS04670 (955729) | 955729..957102 | + | 1374 | Protein_909 | DUF5507 domain-containing protein | - |
| ORI88_RS04675 (957448) | 957448..957606 | + | 159 | Protein_910 | recombinase family protein | - |
| ORI88_RS04680 (957830) | 957830..957949 | + | 120 | WP_001120794.1 | hypothetical protein | - |
| ORI88_RS04685 (958097) | 958097..959305 | + | 1209 | WP_001339197.1 | IS4 family transposase IS10R | Transposase |
| ORI88_RS04690 (959352) | 959352..963932 | + | 4581 | WP_010723187.1 | putative autotransporter | VF |
| ORI88_RS04695 (964296) | 964296..964625 | - | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| ORI88_RS04700 (964646) | 964646..964963 | - | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| ORI88_RS04705 (965001) | 965001..965201 | - | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| ORI88_RS04710 (965210) | 965210..965692 | - | 483 | WP_001407480.1 | RadC family protein | - |
| ORI88_RS04715 (965701) | 965701..966159 | - | 459 | WP_000211841.1 | antirestriction protein | - |
| ORI88_RS04720 (966262) | 966262..966446 | - | 185 | Protein_919 | DUF905 family protein | - |
| ORI88_RS04725 (967057) | 967057..968760 | - | 1704 | WP_000896263.1 | protein YfjW | - |
| ORI88_RS04730 (968902) | 968902..969911 | + | 1010 | Protein_921 | arsenic transporter | - |
| ORI88_RS04735 (969924) | 969924..970076 | + | 153 | Protein_922 | arsenate reductase | - |
| ORI88_RS04740 (970463) | 970463..970930 | - | 468 | WP_000702495.1 | protein YfjT | - |
| ORI88_RS04745 (970954) | 970954..971397 | - | 444 | WP_000824222.1 | lipoprotein YfjS | - |
| ORI88_RS04750 (971397) | 971397..971633 | - | 237 | WP_001144029.1 | protein YpjK | - |
| ORI88_RS04755 (971674) | 971674..972375 | - | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| ORI88_RS04760 (972592) | 972592..973413 | - | 822 | WP_000197391.1 | DUF932 domain-containing protein | - |
| ORI88_RS04765 (973505) | 973505..974368 | - | 864 | WP_000787597.1 | GTPase family protein | - |
| ORI88_RS04770 (974723) | 974723..975094 | - | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| ORI88_RS04775 (975087) | 975087..976160 | - | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| ORI88_RS04780 (976302) | 976302..976565 | + | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| ORI88_RS04785 (976925) | 976925..978541 | + | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| ORI88_RS04790 (978538) | 978538..980727 | + | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| ORI88_RS04795 (980905) | 980905..981531 | - | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| ORI88_RS04800 (981684) | 981684..983093 | - | 1410 | WP_000481742.1 | YfjI family protein | - |
| ORI88_RS04805 (983222) | 983222..983434 | - | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| ORI88_RS04810 (983478) | 983478..984434 | + | 957 | WP_000510827.1 | protein YfjH | - |
| ORI88_RS04815 (984678) | 984678..985919 | - | 1242 | WP_000101723.1 | Prophage integrase IntA ; Integrase | Integrase |
| ORI88_RS04825 (986700) | 986700..987182 | - | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| ORI88_RS04830 (987353) | 987353..987790 | + | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| ORI88_RS04835 (987780) | 987780..988070 | + | 291 | WP_001117838.1 | RnfH family protein | - |
| ORI88_RS04840 (988132) | 988132..988473 | - | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| ORI88_RS04845 (988622) | 988622..990283 | - | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| ORI88_RS04850 (990369) | 990369..991247 | - | 879 | WP_001059169.1 | NAD(+) kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0.001 |