MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP110018 Location: 1499420..1521094 Organism: Escherichia coli strain DH10B Replicon: chromosome
Accession: NZ_CP110018 Location: 1499420..1521094 Organism: Escherichia coli strain DH10B Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OLR78_RS07435 (1495409) | 1495409..1495456 | + | 48 | WP_211180494.1 | protein YnaN | - |
| OLR78_RS07440 (1495470) | 1495470..1496453 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| OLR78_RS07445 (1496728) | 1496728..1496901 | + | 174 | WP_001296046.1 | protein YnaL | - |
| OLR78_RS07450 (1496931) | 1496931..1498304 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| OLR78_RS07455 (1498433) | 1498433..1499368 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| OLR78_RS07460 (1499420) | 1499420..1500655 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| OLR78_RS07465 (1500657) | 1500657..1500872 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| - (1500976) | 1500976..1501154 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1500976) | 1500976..1501154 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1500976) | 1500976..1501154 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1500976) | 1500976..1501154 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| OLR78_RS07470 (1500951) | 1500951..1501160 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| OLR78_RS07475 (1501153) | 1501153..1501347 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| OLR78_RS07480 (1501404) | 1501404..1502213 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| OLR78_RS07485 (1502206) | 1502206..1504806 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| OLR78_RS07490 (1504908) | 1504908..1505183 | - | 276 | WP_000632297.1 | protein RacC | - |
| OLR78_RS07495 (1505258) | 1505258..1505428 | - | 171 | WP_001352098.1 | YdaE family protein | - |
| OLR78_RS07500 (1505428) | 1505428..1505649 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| OLR78_RS07505 (1506091) | 1506091..1506579 | + | 489 | WP_001312793.1 | superinfection exclusion B family protein | - |
| OLR78_RS07510 (1506576) | 1506576..1506731 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| OLR78_RS07515 (1506742) | 1506742..1506876 | - | 135 | WP_000233809.1 | phage protein | - |
| OLR78_RS07520 (1507185) | 1507185..1507661 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| OLR78_RS07525 (1507785) | 1507785..1508081 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| OLR78_RS07530 (1508104) | 1508104..1508526 | + | 423 | WP_000693797.1 | toxin YdaT family protein | - |
| OLR78_RS07535 (1508539) | 1508539..1509396 | + | 858 | WP_000899748.1 | YdaU family protein | - |
| OLR78_RS07540 (1509403) | 1509403..1510149 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| OLR78_RS07545 (1510172) | 1510172..1510624 | + | 453 | Protein_1471 | DUF1627 domain-containing protein | - |
| OLR78_RS07550 (1510820) | 1510820..1511005 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| OLR78_RS07555 (1511202) | 1511202..1512659 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| OLR78_RS07560 (1512797) | 1512797..1513060 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| OLR78_RS07565 (1513041) | 1513041..1513400 | + | 360 | WP_000091628.1 | protein YdaY | - |
| OLR78_RS07570 (1513874) | 1513874..1514806 | + | 933 | Protein_1476 | phage tail length tape measure family protein | - |
| OLR78_RS07575 (1514809) | 1514809..1515024 | + | 216 | Protein_1477 | Ail/Lom family outer membrane beta-barrel protein | - |
| OLR78_RS07580 (1515166) | 1515166..1516146 | - | 981 | WP_000019451.1 | IS5 family transposase ISKpn26 | Transposase |
| OLR78_RS07585 (1516216) | 1516216..1516404 | + | 189 | Protein_1479 | Ail/Lom family outer membrane beta-barrel protein | - |
| OLR78_RS07590 (1516469) | 1516469..1519831 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| OLR78_RS07595 (1519831) | 1519831..1520406 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| OLR78_RS07600 (1520504) | 1520504..1521094 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| OLR78_RS07605 (1521411) | 1521411..1521644 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| OLR78_RS07610 (1521835) | 1521835..1522815 | + | 981 | WP_000019403.1 | IS5-like element IS5 family transposase | - |
| OLR78_RS07615 (1522948) | 1522948..1523025 | - | 78 | Protein_1485 | hypothetical protein | - |
| OLR78_RS07620 (1523804) | 1523804..1524238 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| OLR78_RS07625 (1524379) | 1524379..1525512 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |