MGE detailed information
MGE type: Prophage MGE length: 91338 bp
Accession: NZ_CP104649 Location: 817838..909175 Organism: Escherichia coli strain PNUSAE008512 Replicon: chromosome
Accession: NZ_CP104649 Location: 817838..909175 Organism: Escherichia coli strain PNUSAE008512 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5913_RS04290 (814352) | 814352..815098 | + | 747 | WP_000636568.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| N5913_RS04295 (815187) | 815187..815873 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| N5913_RS04300 (816050) | 816050..816253 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| N5913_RS04305 (816289) | 816289..817749 | - | 1461 | WP_000527769.1 | mannitol dehydrogenase family protein | - |
| N5913_RS04310 (817838) | 817838..819121 | - | 1284 | Protein_852 | MHS family MFS transporter YdfJ | - |
| N5913_RS04315 (819253) | 819253..819495 | + | 243 | WP_001120551.1 | DinI-like family protein | - |
| N5913_RS04320 (819657) | 819657..820298 | - | 642 | WP_001143804.1 | hypothetical protein | VF |
| N5913_RS04325 (820380) | 820380..821009 | - | 630 | WP_001303500.1 | hypothetical protein | VF |
| N5913_RS04330 (821082) | 821082..821657 | - | 576 | WP_001131658.1 | hypothetical protein | VF |
| N5913_RS04335 (821771) | 821771..822040 | - | 270 | WP_001023407.1 | phage tail fiber C-terminal domain-containing protein | - |
| N5913_RS04340 (822042) | 822042..823356 | - | 1315 | Protein_858 | prophage tail fiber N-terminal domain-containing protein | - |
| N5913_RS04345 (823420) | 823420..824019 | - | 600 | WP_261627829.1 | Outer membrane protein X | VF |
| N5913_RS04350 (824087) | 824087..826654 | - | 2568 | Protein_860 | host specificity protein J | - |
| N5913_RS04355 (826654) | 826654..828165 | - | 1512 | Protein_861 | host specificity protein J | - |
| N5913_RS04360 (828507) | 828507..829088 | - | 582 | WP_001089999.1 | tail assembly protein | - |
| N5913_RS04365 (829085) | 829085..829828 | - | 744 | WP_000194720.1 | C40 family peptidase | - |
| N5913_RS04370 (829839) | 829839..830537 | - | 699 | WP_001179510.1 | phage minor tail protein L | - |
| N5913_RS04375 (830537) | 830537..830878 | - | 342 | WP_000807954.1 | phage tail protein | - |
| N5913_RS04380 (830871) | 830871..834115 | - | 3245 | Protein_866 | phage tail tape measure protein | - |
| N5913_RS04385 (834167) | 834167..834376 | - | 210 | WP_001453698.1 | DUF4035 domain-containing protein | - |
| N5913_RS04390 (834472) | 834472..834846 | - | 375 | WP_001030063.1 | phage tail assembly chaperone | - |
| N5913_RS04395 (834852) | 834852..835567 | - | 716 | Protein_869 | immunoglobulin domain-containing protein | - |
| N5913_RS04400 (835649) | 835649..835967 | - | 319 | Protein_870 | DUF3168 domain-containing protein | - |
| N5913_RS04405 (835964) | 835964..836410 | - | 447 | WP_000573374.1 | HK97 gp10 family phage protein | - |
| N5913_RS04410 (836407) | 836407..836756 | - | 350 | Protein_872 | phage head closure protein | - |
| N5913_RS04415 (836766) | 836766..837092 | - | 327 | WP_000126026.1 | head-tail connector protein | - |
| N5913_RS04420 (837089) | 837089..839186 | - | 2098 | Protein_874 | phage portal protein | - |
| N5913_RS04425 (839132) | 839132..839353 | - | 222 | WP_001063023.1 | hypothetical protein | - |
| N5913_RS04430 (839398) | 839398..839994 | - | 597 | Protein_876 | phage major capsid protein | - |
| N5913_RS04435 (839996) | 839996..840304 | - | 309 | Protein_877 | YdfR family protein | - |
| N5913_RS04440 (840309) | 840309..840524 | - | 216 | WP_024180155.1 | class II holin family protein | - |
| N5913_RS04445 (840963) | 840963..842810 | - | 1848 | Protein_879 | DUF1737 domain-containing protein | - |
| N5913_RS04450 (842787) | 842787..842929 | + | 143 | Protein_880 | hypothetical protein | - |
| N5913_RS04455 (843124) | 843124..843291 | - | 168 | WP_000216636.1 | DUF3927 family protein | - |
| N5913_RS04460 (843288) | 843288..843719 | - | 432 | WP_001302123.1 | tellurite resistance protein | - |
| N5913_RS04475 (844170) | 844170..844883 | - | 714 | WP_000301797.1 | helix-turn-helix domain-containing protein | - |
| N5913_RS04480 (845019) | 845019..845216 | - | 198 | WP_000917763.1 | hypothetical protein | - |
| N5913_RS04485 (845441) | 845441..845995 | - | 555 | WP_000640035.1 | DUF1133 family protein | - |
| N5913_RS04490 (846058) | 846058..846363 | - | 306 | WP_001217444.1 | RusA family crossover junction endodeoxyribonuclease | - |
| N5913_RS04495 (846376) | 846376..847425 | - | 1050 | WP_001265229.1 | DUF968 domain-containing protein | - |
| N5913_RS04500 (847427) | 847427..847699 | - | 273 | WP_000191872.1 | hypothetical protein | - |
| N5913_RS04505 (847821) | 847821..848165 | - | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| N5913_RS04510 (848285) | 848285..848440 | - | 156 | WP_000813258.1 | Hok/Gef family protein | Toxin Detail |
| N5913_RS04515 (848731) | 848731..849288 | - | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| N5913_RS04520 (849290) | 849290..849508 | - | 219 | WP_000683609.1 | DUF4014 family protein | - |
| N5913_RS04525 (849636) | 849636..849947 | - | 312 | WP_001289673.1 | hypothetical protein | - |
| N5913_RS04530 (849940) | 849940..850167 | - | 228 | WP_000699809.1 | hypothetical protein | - |
| N5913_RS04535 (850164) | 850164..850445 | - | 282 | WP_000603384.1 | DNA-binding protein | - |
| N5913_RS04540 (850478) | 850478..851194 | - | 717 | WP_000450627.1 | DUF1627 domain-containing protein | - |
| N5913_RS04545 (851228) | 851228..851689 | - | 462 | WP_000139447.1 | replication protein P | - |
| N5913_RS04550 (851682) | 851682..852725 | - | 1044 | WP_001262402.1 | DnaT-like ssDNA-binding domain-containing protein | - |
| N5913_RS04555 (852794) | 852794..853219 | - | 426 | WP_000693878.1 | toxin YdaT family protein | - |
| N5913_RS04560 (853203) | 853203..853445 | - | 243 | WP_000747948.1 | Cro/CI family transcriptional regulator | - |
| N5913_RS04565 (853837) | 853837..854175 | + | 339 | WP_001416688.1 | S24 family peptidase | - |
| N5913_RS04570 (854468) | 854468..854620 | + | 153 | WP_000380316.1 | DUF1391 family protein | - |
| N5913_RS04575 (854632) | 854632..855270 | + | 639 | WP_000394548.1 | hypothetical protein | - |
| N5913_RS04580 (855271) | 855271..855480 | - | 210 | WP_001133037.1 | hypothetical protein | - |
| N5913_RS04585 (856045) | 856045..856233 | + | 189 | WP_000449175.1 | cell division inhibition protein DicB | - |
| N5913_RS04590 (856230) | 856230..856418 | + | 189 | WP_000199475.1 | DUF1482 family protein | - |
| N5913_RS04595 (856511) | 856511..857749 | + | 1239 | Protein_907 | exonuclease | - |
| N5913_RS04600 (857737) | 857737..858288 | + | 552 | Protein_908 | Putative defective protein IntQ ; Integrase | Integrase |
| N5913_RS04605 (858466) | 858466..858708 | + | 243 | WP_001120551.1 | DinI-like family protein | - |
| N5913_RS04610 (858758) | 858758..859576 | - | 819 | Protein_910 | IS256 family transposase IS1414 | Transposase |
| N5913_RS04615 (859671) | 859671..860051 | + | 381 | WP_001171540.1 | IS66 family transposase ISEc8 | Transposase |
| N5913_RS04620 (860048) | 860048..860395 | + | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| N5913_RS04625 (860445) | 860445..860693 | + | 249 | WP_261627830.1 | IS66 family transposase ISEc8 | Transposase |
| N5913_RS04630 (860641) | 860641..861767 | + | 1127 | Protein_914 | IS66 family transposase ISEc8 | Transposase |
| N5913_RS04635 (861876) | 861876..861983 | + | 108 | WP_001696783.1 | IS66 family transposase ISEc8 | Transposase |
| N5913_RS04640 (862021) | 862021..862416 | - | 396 | Protein_916 | IS256 family transposase ISEic2 | Transposase |
| N5913_RS04645 (862566) | 862566..863216 | - | 651 | WP_001121225.1 | hypothetical protein | VF |
| N5913_RS04650 (863927) | 863927..864502 | - | 576 | WP_001131642.1 | hypothetical protein | VF |
| N5913_RS04655 (864616) | 864616..864885 | - | 270 | WP_001023362.1 | phage tail fiber C-terminal domain-containing protein | - |
| N5913_RS04660 (864887) | 864887..866110 | - | 1224 | WP_000268860.1 | prophage tail fiber N-terminal domain-containing protein | - |
| N5913_RS04665 (866175) | 866175..866774 | - | 600 | WP_001230508.1 | Outer membrane protein X | VF |
| N5913_RS04670 (866842) | 866842..870320 | - | 3479 | Protein_922 | host specificity protein J | - |
| N5913_RS04675 (870583) | 870583..870945 | - | 363 | Protein_923 | phage minor tail protein L | - |
| N5913_RS04680 (870945) | 870945..871285 | - | 341 | Protein_924 | phage tail protein | - |
| N5913_RS04685 (871278) | 871278..874520 | - | 3243 | Protein_925 | phage tail tape measure protein | - |
| N5913_RS04690 (874568) | 874568..874777 | - | 210 | WP_001453746.1 | DUF4035 domain-containing protein | - |
| N5913_RS04695 (874873) | 874873..875247 | - | 375 | WP_000710952.1 | phage tail assembly chaperone | - |
| N5913_RS04700 (875262) | 875262..875978 | - | 717 | WP_001275434.1 | major tail subunit | - |
| N5913_RS04705 (876044) | 876044..876387 | - | 344 | Protein_929 | DUF3168 domain-containing protein | - |
| N5913_RS04710 (876384) | 876384..876830 | - | 447 | WP_000573374.1 | HK97 gp10 family phage protein | - |
| N5913_RS04715 (876827) | 876827..877177 | - | 351 | WP_001007905.1 | phage head closure protein | - |
| N5913_RS04720 (877187) | 877187..877513 | - | 327 | WP_000125988.1 | head-tail connector protein | - |
| N5913_RS04725 (877516) | 877516..880095 | - | 2580 | Protein_933 | phage portal protein | - |
| N5913_RS04730 (880041) | 880041..880262 | - | 222 | WP_001063099.1 | hypothetical protein | - |
| N5913_RS04735 (880308) | 880308..882248 | - | 1941 | Protein_935 | phage major capsid protein | - |
| N5913_RS04740 (882312) | 882312..883969 | - | 1658 | Protein_936 | terminase large subunit | - |
| N5913_RS04745 (883966) | 883966..884528 | - | 563 | Protein_937 | terminase small subunit | - |
| N5913_RS04750 (884820) | 884820..885185 | - | 366 | WP_000279796.1 | HNH endonuclease | - |
| N5913_RS04755 (885227) | 885227..885454 | + | 228 | WP_000095736.1 | YlcI/YnfO family protein | - |
| N5913_RS04760 (885879) | 885879..886064 | - | 186 | WP_012816791.1 | Rz1 family lipoprotein | - |
| N5913_RS04765 (886322) | 886322..886438 | - | 117 | WP_000539789.1 | hypothetical protein | - |
| N5913_RS04770 (886438) | 886438..887007 | - | 570 | WP_261627831.1 | phage antirepressor N-terminal domain-containing protein | - |
| N5913_RS04775 (887278) | 887278..887811 | - | 534 | WP_000992137.1 | lysozyme | - |
| N5913_RS04780 (887862) | 887862..888206 | - | 345 | WP_000731241.1 | YdfR family protein | - |
| N5913_RS04785 (888211) | 888211..888426 | - | 216 | WP_024180155.1 | class II holin family protein | - |
| N5913_RS04790 (888865) | 888865..890714 | - | 1850 | Protein_946 | DUF1737 domain-containing protein | - |
| N5913_RS04795 (890691) | 890691..890834 | + | 144 | Protein_947 | hypothetical protein | - |
| N5913_RS04800 (891029) | 891029..891196 | - | 168 | WP_261589714.1 | DUF3927 family protein | - |
| N5913_RS04805 (891193) | 891193..891621 | - | 429 | WP_001303509.1 | tellurite resistance protein | - |
| N5913_RS04825 (892261) | 892261..892950 | - | 690 | WP_001059381.1 | bacteriophage antitermination protein Q | - |
| N5913_RS04830 (892947) | 892947..893306 | - | 360 | WP_001217455.1 | RusA family crossover junction endodeoxyribonuclease | - |
| N5913_RS04835 (893319) | 893319..894296 | - | 978 | WP_193801436.1 | DUF968 domain-containing protein | - |
| N5913_RS04840 (894369) | 894369..894647 | - | 279 | WP_012779366.1 | hypothetical protein | - |
| N5913_RS04845 (894817) | 894817..894972 | - | 156 | WP_001303917.1 | type I toxin-antitoxin system toxin HokD | - |
| N5913_RS04850 (895217) | 895217..895321 | - | 105 | WP_261627832.1 | hypothetical protein | - |
| N5913_RS04855 (895437) | 895437..896021 | - | 585 | WP_000206793.1 | DUF551 domain-containing protein | - |
| N5913_RS04860 (896078) | 896078..896473 | - | 396 | WP_001118159.1 | DUF977 family protein | - |
| N5913_RS04865 (896489) | 896489..897258 | - | 770 | Protein_958 | DUF1627 domain-containing protein | - |
| N5913_RS04870 (897284) | 897284..898024 | - | 741 | WP_000788938.1 | ATP-binding protein | - |
| N5913_RS04875 (898031) | 898031..898993 | - | 963 | WP_000095669.1 | helix-turn-helix domain-containing protein | - |
| N5913_RS04880 (899016) | 899016..899441 | - | 426 | WP_000693943.1 | toxin YdaT family protein | - |
| N5913_RS04885 (899438) | 899438..899740 | - | 303 | WP_000172738.1 | transcriptional regulator | - |
| N5913_RS04890 (899838) | 899838..900209 | + | 372 | WP_001169686.1 | hypothetical protein | - |
| N5913_RS04895 (900230) | 900230..900421 | + | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| N5913_RS04900 (900423) | 900423..900701 | + | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| N5913_RS04905 (901054) | 901054..901353 | + | 300 | WP_001240334.1 | hypothetical protein | - |
| N5913_RS04910 (901425) | 901425..901643 | + | 219 | WP_001171930.1 | protein YdfC | - |
| N5913_RS04915 (902212) | 902212..902400 | + | 189 | WP_000449192.1 | cell division inhibition protein DicB | - |
| N5913_RS04920 (902397) | 902397..902588 | + | 192 | WP_001090200.1 | DUF1482 family protein | - |
| N5913_RS04925 (902681) | 902681..903766 | + | 1086 | Protein_970 | exonuclease | - |
| N5913_RS04930 (903817) | 903817..905030 | + | 1214 | WP_220572504.1 | IS3 family transposase IS1203 | Transposase |
| N5913_RS04935 (905071) | 905071..906465 | + | 1395 | Protein_972 | 3'-5' exoribonuclease | - |
| N5913_RS04940 (906538) | 906538..906789 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| N5913_RS04945 (906824) | 906824..907506 | + | 683 | Protein_974 | DUF3596 domain-containing protein | - |
| N5913_RS04950 (907486) | 907486..907572 | - | 87 | Protein_975 | hypothetical protein | - |
| N5913_RS04955 (907778) | 907778..908104 | - | 327 | WP_001302046.1 | YnfA family protein | - |
| N5913_RS04960 (908239) | 908239..908580 | + | 342 | WP_000705189.1 | DUF1283 family protein | - |
| N5913_RS04965 (908615) | 908615..909175 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| N5913_RS04970 (909178) | 909178..909888 | - | 711 | WP_001303515.1 | YnfC family lipoprotein | - |
| N5913_RS04975 (909996) | 909996..910301 | + | 306 | WP_000778147.1 | DUF1161 domain-containing protein | - |
| N5913_RS04980 (910500) | 910500..912926 | + | 2427 | WP_000041704.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli O157:H7 str. Sakai | Prophage | TA1008 | NC_002695 | 2157035..2254487 | 0.01 |