MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP104484 Location: 879568..890893 Organism: Salmonella enterica strain SalSpp_sample_07_No.3 Replicon: chromosome
Accession: NZ_CP104484 Location: 879568..890893 Organism: Salmonella enterica strain SalSpp_sample_07_No.3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4231_RS04255 (875014) | 875014..876112 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| N4231_RS04260 (876122) | 876122..877639 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| N4231_RS04265 (877715) | 877715..878260 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| N4231_RS04270 (878525) | 878525..879283 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| N4231_RS04280 (879568) | 879568..880374 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| N4231_RS04285 (880649) | 880649..880900 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| N4231_RS04290 (881077) | 881077..881304 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| N4231_RS04295 (881304) | 881304..881702 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| N4231_RS04300 (882508) | 882508..883044 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| N4231_RS04305 (883091) | 883091..883723 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| N4231_RS04310 (884442) | 884442..885026 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| N4231_RS04315 (885146) | 885146..887635 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| N4231_RS04320 (887676) | 887676..888419 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| N4231_RS04325 (888416) | 888416..889492 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| N4231_RS04330 (889636) | 889636..890148 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| N4231_RS04335 (890135) | 890135..890893 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| N4231_RS04340 (891103) | 891103..891939 | - | 837 | WP_000503692.1 | nickel/cobalt efflux protein RcnA | - |
| N4231_RS04345 (892061) | 892061..892333 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| N4231_RS04350 (892364) | 892364..893593 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| N4231_RS04355 (893735) | 893735..894190 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| N4231_RS04360 (894294) | 894294..895157 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |