MGE detailed information
MGE type: Genomic_island MGE length: 31881 bp
Accession: NZ_CP104328 Location: 1098637..1130517 Organism: Escherichia coli strain THB42-F2 Replicon: chromosome
Accession: NZ_CP104328 Location: 1098637..1130517 Organism: Escherichia coli strain THB42-F2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N0499_RS05280 (1094821) | 1094821..1096089 | - | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| N0499_RS05285 (1096109) | 1096109..1097086 | - | 978 | WP_000993126.1 | glutarate dioxygenase GlaH | - |
| N0499_RS05290 (1097422) | 1097422..1099674 | - | 2253 | Protein_1032 | alpha-amylase family glycosyl hydrolase | - |
| N0499_RS05300 (1101060) | 1101060..1102433 | + | 1374 | Protein_1033 | DUF5507 domain-containing protein | - |
| N0499_RS05305 (1102779) | 1102779..1102937 | + | 159 | Protein_1034 | recombinase family protein | - |
| N0499_RS05310 (1103161) | 1103161..1103280 | + | 120 | WP_001120794.1 | hypothetical protein | - |
| N0499_RS05315 (1103345) | 1103345..1107925 | + | 4581 | WP_010723187.1 | hypothetical protein | VF |
| N0499_RS05320 (1108289) | 1108289..1108618 | - | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| N0499_RS05325 (1108639) | 1108639..1108956 | - | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| N0499_RS05330 (1108994) | 1108994..1109194 | - | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| N0499_RS05335 (1109203) | 1109203..1109685 | - | 483 | WP_001407480.1 | RadC family protein | - |
| N0499_RS05340 (1109694) | 1109694..1110152 | - | 459 | WP_000211841.1 | antirestriction protein | - |
| N0499_RS05345 (1110255) | 1110255..1110478 | - | 224 | Protein_1042 | DUF905 domain-containing protein | - |
| N0499_RS05350 (1111050) | 1111050..1112753 | - | 1704 | WP_000896263.1 | protein YfjW | - |
| N0499_RS05355 (1112895) | 1112895..1113904 | + | 1010 | Protein_1044 | arsenic transporter | - |
| N0499_RS05360 (1113917) | 1113917..1114069 | + | 153 | Protein_1045 | arsenate reductase | - |
| N0499_RS05365 (1114456) | 1114456..1114923 | - | 468 | WP_000702495.1 | protein YfjT | - |
| N0499_RS05370 (1114947) | 1114947..1115390 | - | 444 | WP_000824222.1 | lipoprotein YfjS | - |
| N0499_RS05375 (1115390) | 1115390..1115626 | - | 237 | WP_001144029.1 | protein YpjK | - |
| N0499_RS05380 (1115667) | 1115667..1116368 | - | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| N0499_RS05385 (1116585) | 1116585..1117406 | - | 822 | WP_000197391.1 | DUF932 domain-containing protein | - |
| N0499_RS05390 (1117498) | 1117498..1118361 | - | 864 | WP_000787597.1 | GTPase family protein | - |
| N0499_RS05395 (1118716) | 1118716..1119087 | - | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| N0499_RS05400 (1119080) | 1119080..1120153 | - | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| N0499_RS05405 (1120295) | 1120295..1120558 | + | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| N0499_RS05410 (1120918) | 1120918..1122534 | + | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| N0499_RS05415 (1122531) | 1122531..1124720 | + | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| N0499_RS05420 (1124898) | 1124898..1125524 | - | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| N0499_RS05425 (1125677) | 1125677..1127086 | - | 1410 | WP_000481742.1 | YfjI family protein | - |
| N0499_RS05430 (1127215) | 1127215..1127427 | - | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| N0499_RS05435 (1127471) | 1127471..1128427 | + | 957 | WP_000510827.1 | protein YfjH | - |
| N0499_RS05440 (1128671) | 1128671..1129912 | - | 1242 | WP_000101723.1 | hypothetical protein ; Integrase | Integrase |
| N0499_RS05450 (1130693) | 1130693..1131175 | - | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| N0499_RS05455 (1131346) | 1131346..1131783 | + | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| N0499_RS05460 (1131773) | 1131773..1132063 | + | 291 | WP_001117838.1 | RnfH family protein | - |
| N0499_RS05465 (1132125) | 1132125..1132466 | - | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| N0499_RS05470 (1132615) | 1132615..1134276 | - | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| N0499_RS05475 (1134362) | 1134362..1135240 | - | 879 | WP_001059169.1 | NAD(+) kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0 |