MGE detailed information
MGE type: Genomic_island MGE length: 9351 bp
Accession: NZ_CP104114 Location: 445660..455010 Organism: Escherichia coli strain USDA-ARS-USMARC-51408 Replicon: chromosome
Accession: NZ_CP104114 Location: 445660..455010 Organism: Escherichia coli strain USDA-ARS-USMARC-51408 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N1706_RS02015 (442391) | 442391..443110 | - | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
| N1706_RS02020 (443107) | 443107..444738 | - | 1632 | WP_001216477.1 | sensor histidine kinase | - |
| N1706_RS02025 (444919) | 444919..445149 | + | 231 | WP_000371704.1 | 4Fe-4S mono-cluster protein YjdI | - |
| N1706_RS02030 (445161) | 445161..445433 | + | 273 | WP_000405651.1 | GNAT family N-acetyltransferase | - |
| N1706_RS02035 (445660) | 445660..445956 | + | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| N1706_RS02040 (445984) | 445984..446157 | + | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| N1706_RS02045 (446276) | 446276..447793 | - | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| N1706_RS02050 (448030) | 448030..449487 | - | 1458 | WP_000856829.1 | dipeptide/tripeptide permease DtpC | - |
| N1706_RS02055 (449546) | 449546..451693 | - | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| N1706_RS02060 (451773) | 451773..453107 | - | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| N1706_RS02065 (453472) | 453472..455010 | - | 1539 | WP_001187173.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| N1706_RS02075 (455809) | 455809..456384 | - | 576 | WP_001188520.1 | transcriptional regulator | - |
| N1706_RS02080 (456421) | 456421..458118 | - | 1698 | WP_000068922.1 | protein-disulfide reductase DsbD | - |
| N1706_RS02085 (458094) | 458094..458432 | - | 339 | WP_000883400.1 | divalent cation tolerance protein CutA | - |
| N1706_RS02090 (458548) | 458548..459849 | - | 1302 | WP_000961959.1 | anaerobic C4-dicarboxylate transporter DcuA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20087 | HG738867 | 4238430..4247780 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21458 | NC_007779 | 4357262..4366612 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23874 | NC_012759 | 4289342..4298692 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68443 | NZ_CP017979 | 4248154..4261393 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285032 | NZ_HG738867 | 4238430..4247780 | 0 |