MGE detailed information
MGE type: Conjugative plasmid MGE length: 98998 bp
Accession: NZ_CP103546 Location: 1..98998 Organism: Escherichia coli strain 3036 Replicon: plasmid pMB9029_2
Accession: NZ_CP103546 Location: 1..98998 Organism: Escherichia coli strain 3036 Replicon: plasmid pMB9029_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5S54_RS23745 (1) | 1..591 | + | 591 | WP_000194550.1 | hypothetical protein | - |
| M5S54_RS23750 (609) | 609..956 | - | 348 | WP_000142436.1 | DUF6404 family protein | - |
| M5S54_RS23755 (1075) | 1075..1422 | + | 348 | WP_000762570.1 | colicin 1B immunity protein | - |
| M5S54_RS23760 (1440) | 1440..3320 | - | 1881 | WP_001283341.1 | colicin Ia central receptor-binding domain-containing protein | - |
| M5S54_RS23765 (3599) | 3599..4069 | - | 471 | Protein_5 | hypothetical protein | - |
| M5S54_RS23770 (4121) | 4121..4438 | + | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| M5S54_RS23775 (4435) | 4435..4968 | - | 534 | WP_001221666.1 | lipocalin family protein | - |
| M5S54_RS23780 (5062) | 5062..6207 | - | 1146 | WP_000976514.1 | Beta-lactamase | ARG |
| M5S54_RS23785 (6531) | 6531..7793 | - | 1263 | WP_142434305.1 | IS1380 family transposase ISEcp1 | Transposase |
| M5S54_RS23790 (7976) | 7976..8860 | - | 885 | Protein_10 | hypothetical protein | - |
| M5S54_RS23795 (9214) | 9214..9816 | + | 603 | WP_000517695.1 | ProQ/FINO family protein | - |
| M5S54_RS23800 (9872) | 9872..10366 | + | 495 | WP_001459505.1 | hypothetical protein | - |
| M5S54_RS23805 (10366) | 10366..10632 | + | 267 | WP_000955263.1 | hypothetical protein | - |
| M5S54_RS23810 (11109) | 11109..11582 | - | 474 | WP_001334658.1 | hypothetical protein | - |
| M5S54_RS23815 (11699) | 11699..12547 | - | 849 | WP_022630346.1 | 3'-5' exonuclease | - |
| M5S54_RS23820 (12587) | 12587..12865 | - | 279 | WP_244442846.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| M5S54_RS23825 (12865) | 12865..13134 | - | 270 | WP_000079941.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| M5S54_RS23830 (13189) | 13189..13347 | - | 159 | WP_000841008.1 | hypothetical protein | - |
| M5S54_RS23835 (14043) | 14043..15074 | - | 1032 | WP_000907873.1 | plasmid replication initiator RepA | - |
| M5S54_RS23840 (16080) | 16080..16310 | + | 231 | WP_228772074.1 | ash family protein | - |
| M5S54_RS23845 (16228) | 16228..16515 | + | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| M5S54_RS23850 (16957) | 16957..17490 | + | 534 | WP_001303319.1 | transcription termination/antitermination NusG family protein | - |
| M5S54_RS23855 (17744) | 17744..18427 | + | 684 | WP_000213857.1 | conjugal transfer protein TraC | - |
| M5S54_RS23860 (18441) | 18441..19007 | + | 567 | WP_000776428.1 | protein TraD | - |
| M5S54_RS23865 (19275) | 19275..19529 | + | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| M5S54_RS23870 (19572) | 19572..20024 | + | 453 | WP_000008892.1 | hypothetical protein | - |
| M5S54_RS23875 (20698) | 20698..21765 | + | 1068 | WP_000742600.1 | hypothetical protein | VF |
| M5S54_RS23880 (21765) | 21765..22202 | + | 438 | WP_000539807.1 | hypothetical protein | VF |
| M5S54_RS23885 (22216) | 22216..23898 | + | 1683 | WP_000748143.1 | hypothetical protein | VF |
| M5S54_RS23890 (23891) | 23891..25186 | + | 1296 | WP_000752774.1 | type 4b pilus protein PilO2 | - |
| M5S54_RS23895 (25173) | 25173..25625 | + | 453 | WP_001247336.1 | hypothetical protein | VF |
| M5S54_RS23900 (25636) | 25636..27189 | + | 1554 | WP_000362202.1 | hypothetical protein | VF |
| M5S54_RS23905 (27202) | 27202..28299 | + | 1098 | WP_001208805.1 | hypothetical protein | VF |
| M5S54_RS23910 (28317) | 28317..28931 | + | 615 | WP_000959785.1 | hypothetical protein | VF |
| M5S54_RS23915 (28941) | 28941..29501 | + | 561 | WP_000014116.1 | hypothetical protein | VF |
| M5S54_RS23920 (29486) | 29486..30142 | + | 657 | WP_001193553.1 | hypothetical protein | VF |
| M5S54_RS23925 (30142) | 30142..31566 | + | 1425 | WP_023278060.1 | hypothetical protein | VF |
| M5S54_RS23930 (32370) | 32370..33524 | + | 1155 | WP_001139958.1 | site-specific integrase | - |
| M5S54_RS23935 (33675) | 33675..34499 | + | 825 | WP_001238927.1 | conjugal transfer protein TraE | - |
| M5S54_RS23940 (34585) | 34585..35787 | + | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| M5S54_RS23945 (35847) | 35847..36431 | + | 585 | WP_000977517.1 | histidine phosphatase family protein | - |
| M5S54_RS23950 (36826) | 36826..37284 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| M5S54_RS23955 (37281) | 37281..38099 | + | 819 | WP_000646097.1 | hypothetical protein | VF |
| M5S54_RS23960 (38096) | 38096..39244 | + | 1149 | WP_001024972.1 | putative protein YggR | VF |
| M5S54_RS23965 (39241) | 39241..39531 | + | 291 | WP_001299214.1 | hypothetical protein | - |
| M5S54_RS23970 (39546) | 39546..40097 | + | 552 | WP_000014584.1 | Phospholipase D | VF |
| M5S54_RS23975 (40187) | 40187..43954 | + | 3768 | WP_001141535.1 | DUF5710 domain-containing protein | - |
| M5S54_RS23980 (43972) | 43972..44319 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| M5S54_RS23985 (44316) | 44316..45008 | + | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| M5S54_RS23990 (45019) | 45019..46002 | + | 984 | WP_001191878.1 | hypothetical protein | VF |
| M5S54_RS23995 (46005) | 46005..47294 | + | 1290 | WP_001271997.1 | conjugal transfer protein TraO | - |
| M5S54_RS24000 (47294) | 47294..47998 | + | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| M5S54_RS24005 (47998) | 47998..48525 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| M5S54_RS24010 (48576) | 48576..48980 | + | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| M5S54_RS24015 (49044) | 49044..49232 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| M5S54_RS24020 (49216) | 49216..50016 | + | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| M5S54_RS24025 (50106) | 50106..53150 | + | 3045 | WP_001024751.1 | IncI1-type conjugal transfer protein TraU | - |
| M5S54_RS24030 (53150) | 53150..53764 | + | 615 | WP_000337394.1 | IncI1-type conjugal transfer protein TraV | - |
| M5S54_RS24035 (53731) | 53731..54933 | + | 1203 | WP_001189158.1 | IncI1-type conjugal transfer protein TraW | - |
| M5S54_RS24040 (54962) | 54962..55546 | + | 585 | WP_001037998.1 | conjugal transfer protein TraX | - |
| M5S54_RS24045 (55643) | 55643..57811 | + | 2169 | WP_000698368.1 | DotA/TraY family protein | - |
| M5S54_RS24050 (57882) | 57882..58544 | + | 663 | WP_000644794.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| M5S54_RS24055 (58616) | 58616..58825 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| M5S54_RS24060 (59217) | 59217..59393 | + | 177 | WP_001054900.1 | hypothetical protein | - |
| - (59879) | 59879..59930 | + | 52 | NuclAT_1 | - | - |
| - (59879) | 59879..59930 | + | 52 | NuclAT_1 | - | - |
| - (59879) | 59879..59930 | + | 52 | NuclAT_1 | - | - |
| - (59879) | 59879..59930 | + | 52 | NuclAT_1 | - | - |
| M5S54_RS24065 (60114) | 60114..61136 | + | 1023 | WP_001572805.1 | IS21 family transposase IS100kyp | Transposase |
| M5S54_RS24070 (61133) | 61133..61915 | + | 783 | WP_001300609.1 | IS21 family transposase IS100kyp | Transposase |
| M5S54_RS24075 (62276) | 62276..62527 | + | 252 | WP_001291965.1 | hypothetical protein | - |
| M5S54_RS24080 (62599) | 62599..62751 | - | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| - (62801) | 62801..62863 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (62801) | 62801..62863 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (62801) | 62801..62863 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (62801) | 62801..62863 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| M5S54_RS24085 (63043) | 63043..64251 | + | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| M5S54_RS24090 (64270) | 64270..65340 | + | 1071 | WP_000151575.1 | IncI1-type conjugal transfer protein TrbB | - |
| M5S54_RS24095 (65333) | 65333..67624 | + | 2292 | WP_001289271.1 | F-type conjugative transfer protein TrbC | - |
| M5S54_RS24100 (67661) | 67661..70360 | - | 2700 | WP_001474686.1 | hypothetical protein | Relaxase |
| M5S54_RS24105 (70371) | 70371..70703 | - | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| M5S54_RS24110 (70937) | 70937..71272 | + | 336 | WP_000157086.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| M5S54_RS24115 (71358) | 71358..72206 | - | 849 | WP_032174273.1 | DUF4942 domain-containing protein | - |
| M5S54_RS24120 (72786) | 72786..73037 | + | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| M5S54_RS24125 (73068) | 73068..73349 | - | 282 | WP_001334682.1 | hypothetical protein | VF |
| M5S54_RS24130 (73349) | 73349..74251 | - | 903 | WP_000038404.1 | ISNCY family transposase ISRor2 | VF |
| M5S54_RS24135 (74316) | 74316..74582 | - | 267 | WP_001247862.1 | hypothetical protein | - |
| M5S54_RS24140 (74676) | 74676..75110 | - | 435 | WP_000218863.1 | hypothetical protein | - |
| M5S54_RS24145 (75839) | 75839..76339 | - | 501 | WP_000117611.1 | antirestriction protein ArdA | - |
| M5S54_RS24150 (76786) | 76786..77961 | - | 1176 | WP_000942657.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| M5S54_RS24155 (78091) | 78091..78810 | - | 720 | WP_001276260.1 | plasmid SOS inhibition protein A | - |
| M5S54_RS24160 (78807) | 78807..79241 | - | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| M5S54_RS24165 (79296) | 79296..81254 | - | 1959 | WP_001145458.1 | ParB/RepB/Spo0J family partition protein | - |
| M5S54_RS24170 (81313) | 81313..81546 | - | 234 | WP_000006012.1 | DUF905 family protein | - |
| M5S54_RS24175 (81604) | 81604..82131 | - | 528 | WP_001276116.1 | single-stranded DNA-binding protein | - |
| M5S54_RS24180 (82483) | 82483..82830 | - | 348 | WP_001303314.1 | hypothetical protein | - |
| M5S54_RS24185 (82901) | 82901..83092 | - | 192 | WP_001027500.1 | hypothetical protein | - |
| M5S54_RS24190 (83089) | 83089..83511 | - | 423 | WP_000271725.1 | DUF1380 family protein | - |
| M5S54_RS24195 (83558) | 83558..83983 | - | 426 | WP_001198928.1 | antirestriction protein | - |
| M5S54_RS24200 (84401) | 84401..85171 | - | 771 | WP_024133193.1 | hypothetical protein | - |
| M5S54_RS24205 (85222) | 85222..85708 | - | 487 | Protein_93 | DUF1380 domain-containing protein | - |
| M5S54_RS24210 (85668) | 85668..85889 | - | 222 | WP_001104887.1 | hypothetical protein | - |
| M5S54_RS24215 (85890) | 85890..86573 | - | 684 | WP_000086178.1 | DNA methylase | - |
| M5S54_RS24220 (86650) | 86650..86961 | - | 312 | WP_010891263.1 | hypothetical protein | - |
| M5S54_RS24225 (86958) | 86958..87860 | - | 903 | WP_000273918.1 | DUF1281 domain-containing protein | - |
| M5S54_RS24230 (88278) | 88278..88526 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| M5S54_RS24235 (88523) | 88523..88960 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| M5S54_RS24240 (88960) | 88960..90234 | + | 1275 | WP_000457493.1 | Y-family DNA polymerase | - |
| M5S54_RS24245 (90236) | 90236..90652 | - | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| M5S54_RS24250 (90645) | 90645..91625 | - | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| M5S54_RS24255 (92039) | 92039..92347 | - | 309 | WP_000030199.1 | hypothetical protein | - |
| M5S54_RS24260 (92434) | 92434..93078 | - | 645 | WP_001144036.1 | ParA family protein | - |
| M5S54_RS24265 (93258) | 93258..94064 | - | 807 | WP_000016969.1 | site-specific integrase | - |
| M5S54_RS24270 (94065) | 94065..94370 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| M5S54_RS24275 (94372) | 94372..94590 | - | 219 | WP_000813630.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| M5S54_RS24280 (95148) | 95148..96074 | + | 927 | WP_001290416.1 | hypothetical protein | - |
| M5S54_RS24285 (96119) | 96119..96373 | + | 255 | WP_000678527.1 | hypothetical protein | - |
| M5S54_RS24290 (96872) | 96872..97216 | + | 345 | WP_000793307.1 | hypothetical protein | - |
| M5S54_RS24295 (97392) | 97392..98393 | - | 1002 | WP_000774875.1 | DUF4238 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|