MGE detailed information
MGE type: Conjugative plasmid MGE length: 138196 bp
Accession: NZ_CP102502 Location: 1..138196 Organism: Citrobacter youngae strain CF10 Replicon: plasmid pCF10-NDM
Accession: NZ_CP102502 Location: 1..138196 Organism: Citrobacter youngae strain CF10 Replicon: plasmid pCF10-NDM
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NUG39_RS25090 (NUG39_25090) | 19..894 | + | 876 | WP_004098982.1 | replication initiation protein | - |
| NUG39_RS25095 (NUG39_25095) | 1543..2169 | + | 627 | WP_004197649.1 | hypothetical protein | VF |
| NUG39_RS25100 (NUG39_25100) | 2166..2468 | + | 303 | WP_071571079.1 | hypothetical protein | - |
| NUG39_RS25105 (NUG39_25105) | 2940..3734 | - | 795 | WP_004197635.1 | site-specific integrase | - |
| NUG39_RS25110 (NUG39_25110) | 3932..4948 | - | 1017 | WP_017899884.1 | hypothetical protein | - |
| NUG39_RS25115 (NUG39_25115) | 4959..5273 | - | 315 | WP_053389906.1 | hypothetical protein | - |
| NUG39_RS25120 (NUG39_25120) | 5300..5695 | - | 396 | WP_017899885.1 | hypothetical protein | - |
| NUG39_RS25125 (NUG39_25125) | 5864..6169 | - | 306 | WP_025714517.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| NUG39_RS25130 (NUG39_25130) | 6171..6389 | - | 219 | WP_001568025.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| NUG39_RS25135 (NUG39_25135) | 6969..7538 | + | 570 | WP_016162066.1 | hypothetical protein | - |
| NUG39_RS25140 (NUG39_25140) | 7679..8707 | + | 1029 | WP_001568023.1 | Abi family protein | - |
| NUG39_RS25145 (NUG39_25145) | 8852..11656 | - | 2805 | WP_001568022.1 | hypothetical protein | - |
| NUG39_RS25150 (NUG39_25150) | 12256..13671 | - | 1416 | WP_001568020.1 | AAA family ATPase | - |
| NUG39_RS25155 (NUG39_25155) | 13668..15395 | - | 1728 | WP_001568019.1 | ATP-binding protein | - |
| NUG39_RS25160 (NUG39_25160) | 15841..16089 | + | 249 | WP_001568018.1 | hypothetical protein | - |
| NUG39_RS25165 (NUG39_25165) | 16086..16658 | + | 573 | WP_001568017.1 | hypothetical protein | - |
| NUG39_RS25170 (NUG39_25170) | 16689..17183 | + | 495 | WP_001568016.1 | hypothetical protein | - |
| NUG39_RS25175 (NUG39_25175) | 17416..17724 | - | 309 | WP_001568014.1 | hypothetical protein | - |
| NUG39_RS25180 (NUG39_25180) | 18218..18766 | + | 549 | WP_001567366.1 | thioredoxin fold domain-containing protein | - |
| NUG39_RS25185 (NUG39_25185) | 18813..19247 | + | 435 | WP_001567367.1 | cell envelope integrity protein TolA | - |
| NUG39_RS25190 (NUG39_25190) | 19463..19786 | - | 324 | WP_020316929.1 | hypothetical protein | - |
| NUG39_RS25195 (NUG39_25195) | 19976..20647 | - | 672 | WP_020316917.1 | SOS response-associated peptidase | - |
| NUG39_RS25200 (NUG39_25200) | 21088..22326 | + | 1239 | WP_012291449.1 | IS110 family transposase ISCps4 | Transposase |
| NUG39_RS25205 (NUG39_25205) | 22380..23411 | - | 1032 | WP_020316924.1 | GIY-YIG nuclease family protein | - |
| NUG39_RS25210 (NUG39_25210) | 23804..24286 | + | 483 | Protein_24 | IS110 family transposase ISCps4 | Transposase |
| NUG39_RS25215 (NUG39_25215) | 24320..27286 | - | 2967 | WP_001138014.1 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| NUG39_RS25220 (NUG39_25220) | 27290..27850 | - | 561 | WP_001161490.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| NUG39_RS25225 (NUG39_25225) | 28462..30006 | + | 1545 | WP_025760430.1 | Aerotaxis receptor | VF |
| NUG39_RS25230 (NUG39_25230) | 30065..31141 | + | 1077 | WP_173675451.1 | Alginate lyase | VF |
| NUG39_RS25235 (NUG39_25235) | 31309..31443 | + | 135 | WP_025760437.1 | stationary-phase-induced ribosome-associated protein | - |
| NUG39_RS25240 (NUG39_25240) | 31622..31825 | + | 204 | Protein_30 | NAD-dependent malic enzyme | - |
| NUG39_RS25245 (NUG39_25245) | 32112..32651 | + | 540 | WP_001567334.1 | hypothetical protein | - |
| NUG39_RS25250 (NUG39_25250) | 32662..32919 | + | 258 | WP_001567333.1 | hypothetical protein | - |
| NUG39_RS25255 (NUG39_25255) | 33101..33850 | - | 750 | Protein_33 | IS110 family transposase IS4321 | Transposase |
| NUG39_RS25260 (NUG39_25260) | 33864..34790 | + | 927 | WP_257749362.1 | SIR2 family protein | - |
| NUG39_RS25265 (NUG39_25265) | 34787..36595 | + | 1809 | WP_032413492.1 | ATP-binding protein | - |
| NUG39_RS25270 (NUG39_25270) | 37363..37581 | + | 219 | WP_032934863.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| NUG39_RS25275 (NUG39_25275) | 37583..37888 | + | 306 | WP_008322213.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| NUG39_RS25280 (NUG39_25280) | 37890..38204 | + | 315 | WP_008322211.1 | hypothetical protein | - |
| NUG39_RS25285 (NUG39_25285) | 38194..38985 | + | 792 | WP_008322208.1 | site-specific integrase | - |
| NUG39_RS25290 (NUG39_25290) | 39184..40524 | - | 1341 | Protein_40 | GntP family transporter | - |
| NUG39_RS25295 (NUG39_25295) | 40668..41414 | - | 747 | Protein_41 | IS5 family transposase IS5D | Transposase |
| NUG39_RS25305 (NUG39_25305) | 42635..42751 | - | 117 | Protein_43 | IS5 family transposase IS5B | Transposase |
| NUG39_RS25310 (NUG39_25310) | 43269..44008 | + | 740 | Protein_44 | site-specific integrase | - |
| NUG39_RS25315 (NUG39_25315) | 44304..45293 | - | 990 | WP_022652311.1 | RepB family plasmid replication initiator protein | - |
| NUG39_RS25320 (NUG39_25320) | 46149..46418 | + | 270 | WP_022652312.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| NUG39_RS25325 (NUG39_25325) | 46422..46952 | + | 531 | WP_016479963.1 | GNAT family N-acetyltransferase | Toxin Detail |
| NUG39_RS25330 (NUG39_25330) | 47120..48100 | + | 981 | WP_000019403.1 | IS5 family transposase IS5D | Transposase |
| NUG39_RS25335 (NUG39_25335) | 48247..48993 | - | 747 | Protein_49 | IS3 family transposase ISEhe3 | Transposase |
| NUG39_RS25340 (NUG39_25340) | 49006..49125 | - | 120 | Protein_50 | IS30 family transposase | - |
| NUG39_RS25345 (NUG39_25345) | 49380..49562 | - | 183 | WP_016479964.1 | hypothetical protein | - |
| NUG39_RS25350 (NUG39_25350) | 49751..51391 | - | 1641 | WP_004201176.1 | 60 kDa chaperonin | VF |
| NUG39_RS25355 (NUG39_25355) | 51447..51737 | - | 291 | WP_004201172.1 | co-chaperone GroES | - |
| NUG39_RS25360 (NUG39_25360) | 51931..52260 | + | 330 | WP_004201171.1 | divalent-cation tolerance protein CutA | - |
| NUG39_RS25365 (NUG39_25365) | 52265..52639 | + | 375 | Protein_55 | protein-disulfide reductase DsbD family protein | - |
| NUG39_RS25370 (NUG39_25370) | 52739..53296 | + | 558 | Protein_56 | twin-arginine translocation (TAT) pathway signal sequence domain protein | - |
| NUG39_RS25375 (NUG39_25375) | 53307..53945 | - | 639 | WP_004201168.1 | phosphoribosylanthranilate isomerase | - |
| NUG39_RS25380 (NUG39_25380) | 53950..54315 | - | 366 | WP_004201167.1 | bleomycin binding protein Ble-MBL | - |
| NUG39_RS25385 (NUG39_25385) | 54319..55131 | - | 813 | WP_004201164.1 | Metallo-beta-lactamase type 2 | ARG |
| NUG39_RS25390 (NUG39_25390) | 55584..56459 | - | 876 | Protein_60 | IS5 family transposase ISKpn26 | Transposase |
| NUG39_RS25395 (NUG39_25395) | 56528..57520 | - | 993 | WP_001145102.1 | hypothetical protein | - |
| NUG39_RS25400 (NUG39_25400) | 57569..57724 | - | 156 | WP_000074143.1 | hypothetical protein | - |
| NUG39_RS25405 (NUG39_25405) | 57928..58908 | + | 981 | WP_000019445.1 | IS5 family transposase ISKpn26 | Transposase |
| NUG39_RS25410 (NUG39_25410) | 58890..59432 | + | 543 | WP_077253195.1 | restriction endonuclease | - |
| NUG39_RS25415 (NUG39_25415) | 59560..60117 | + | 558 | WP_042934582.1 | hypothetical protein | - |
| NUG39_RS25420 (NUG39_25420) | 60561..61142 | - | 582 | WP_045265539.1 | DUF2913 family protein | - |
| NUG39_RS25425 (NUG39_25425) | 61169..61759 | - | 591 | WP_064762226.1 | hypothetical protein | - |
| NUG39_RS25430 (NUG39_25430) | 62025..62259 | + | 235 | Protein_68 | type I restriction-modification system subunit M N-terminal domain-containing protein | - |
| NUG39_RS25435 (NUG39_25435) | 62385..62639 | + | 255 | WP_000880375.1 | hypothetical protein | - |
| NUG39_RS25440 (NUG39_25440) | 62642..64681 | - | 2040 | WP_101740169.1 | ATP-dependent helicase | - |
| NUG39_RS25445 (NUG39_25445) | 64678..65664 | - | 987 | WP_000211824.1 | hypothetical protein | - |
| NUG39_RS25450 (NUG39_25450) | 65976..66176 | - | 201 | WP_257749363.1 | hypothetical protein | - |
| NUG39_RS25455 (NUG39_25455) | 66265..66549 | - | 285 | WP_032072917.1 | hypothetical protein | - |
| NUG39_RS25460 (NUG39_25460) | 66609..67457 | - | 849 | WP_032072916.1 | hypothetical protein | - |
| NUG39_RS25465 (NUG39_25465) | 67596..67742 | + | 147 | WP_032072915.1 | hypothetical protein | - |
| NUG39_RS25470 (NUG39_25470) | 68601..69464 | - | 864 | WP_016247520.1 | incFII family plasmid replication initiator RepA | - |
| NUG39_RS25480 (NUG39_25480) | 69753..70031 | - | 279 | WP_008324932.1 | replication regulatory protein RepA | - |
| NUG39_RS25485 (NUG39_25485) | 70183..70728 | - | 546 | WP_008324931.1 | Cardiolipin synthase A | VF |
| NUG39_RS25490 (NUG39_25490) | 70876..71667 | - | 792 | WP_016479977.1 | DsbA family protein | - |
| NUG39_RS25495 (NUG39_25495) | 71660..72379 | - | 720 | WP_257749355.1 | fertility inhibition protein FinO | - |
| NUG39_RS25500 (NUG39_25500) | 72446..73183 | - | 738 | WP_057064461.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| NUG39_RS25505 (NUG39_25505) | 73185..78425 | - | 5241 | WP_057064462.1 | Multifunctional conjugation protein TraI | Relaxase |
| NUG39_RS25510 (NUG39_25510) | 78425..80593 | - | 2169 | WP_057064463.1 | type IV conjugative transfer system coupling protein TraD | - |
| NUG39_RS25515 (NUG39_25515) | 80712..81512 | - | 801 | WP_226999298.1 | hypothetical protein | - |
| NUG39_RS25520 (NUG39_25520) | 81549..82025 | - | 477 | WP_071886900.1 | hypothetical protein | - |
| NUG39_RS25525 (NUG39_25525) | 82113..83081 | - | 969 | WP_000654812.1 | IS5 family transposase IS903B | Transposase |
| NUG39_RS25530 (NUG39_25530) | 83099..85927 | - | 2829 | WP_257749357.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| NUG39_RS25535 (NUG39_25535) | 85927..87303 | - | 1377 | WP_086551404.1 | conjugal transfer pilus assembly protein TraH | - |
| NUG39_RS25540 (NUG39_25540) | 87300..87845 | - | 546 | WP_045379409.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| NUG39_RS25545 (NUG39_25545) | 87835..88083 | - | 249 | WP_045379412.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| NUG39_RS25550 (NUG39_25550) | 88100..88849 | - | 750 | WP_008324127.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| NUG39_RS25555 (NUG39_25555) | 88880..89068 | - | 189 | WP_008324128.1 | conjugal transfer protein TrbE | - |
| NUG39_RS25560 (NUG39_25560) | 89100..90953 | - | 1854 | WP_016479983.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| NUG39_RS25565 (NUG39_25565) | 90950..91579 | - | 630 | WP_008324130.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| NUG39_RS25570 (NUG39_25570) | 91596..92582 | - | 987 | WP_032160671.1 | conjugal transfer pilus assembly protein TraU | - |
| NUG39_RS25575 (NUG39_25575) | 92585..93232 | - | 648 | WP_008324132.1 | type-F conjugative transfer system protein TraW | - |
| NUG39_RS25580 (NUG39_25580) | 93232..93579 | - | 348 | WP_008324133.1 | type-F conjugative transfer system protein TrbI | - |
| NUG39_RS25585 (NUG39_25585) | 93576..96206 | - | 2631 | WP_008324134.1 | type IV secretion system protein TraC | - |
| NUG39_RS25590 (NUG39_25590) | 96199..96765 | - | 567 | WP_008324135.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| NUG39_RS25595 (NUG39_25595) | 96755..97156 | - | 402 | WP_257749361.1 | hypothetical protein | - |
| NUG39_RS25600 (NUG39_25600) | 97140..97325 | - | 186 | WP_008324139.1 | hypothetical protein | - |
| NUG39_RS25605 (NUG39_25605) | 97329..97553 | - | 225 | WP_016247532.1 | TraR/DksA C4-type zinc finger protein | - |
| NUG39_RS25610 (NUG39_25610) | 97673..98212 | - | 540 | WP_016247533.1 | type IV conjugative transfer system lipoprotein TraV | - |
| NUG39_RS25615 (NUG39_25615) | 98234..99628 | - | 1395 | WP_008324156.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| NUG39_RS25620 (NUG39_25620) | 99615..100358 | - | 744 | WP_008324157.1 | type-F conjugative transfer system secretin TraK | - |
| NUG39_RS25625 (NUG39_25625) | 100345..100911 | - | 567 | WP_016247535.1 | type IV conjugative transfer system protein TraE | - |
| NUG39_RS25630 (NUG39_25630) | 100926..101231 | - | 306 | WP_008324160.1 | type IV conjugative transfer system protein TraL | - |
| NUG39_RS25635 (NUG39_25635) | 101382..101732 | - | 351 | WP_016247536.1 | type IV conjugative transfer system pilin TraA | - |
| NUG39_RS25640 (NUG39_25640) | 101790..102014 | - | 225 | WP_008324165.1 | TraY domain-containing protein | - |
| NUG39_RS25645 (NUG39_25645) | 102101..102790 | - | 690 | WP_008324166.1 | hypothetical protein | - |
| NUG39_RS25650 (NUG39_25650) | 102979..103371 | - | 393 | WP_008324167.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| NUG39_RS25655 (NUG39_25655) | 103803..104288 | + | 486 | WP_001568108.1 | hypothetical protein | VF |
| NUG39_RS25660 (NUG39_25660) | 104321..104650 | - | 330 | WP_011977736.1 | DUF5983 family protein | - |
| NUG39_RS25665 (NUG39_25665) | 104683..105504 | - | 822 | WP_032454971.1 | DUF932 domain-containing protein | - |
| NUG39_RS25670 (NUG39_25670) | 106320..106719 | - | 400 | Protein_115 | hypothetical protein | - |
| NUG39_RS25675 (NUG39_25675) | 106875..110237 | - | 3363 | WP_004197500.1 | DEAD/DEAH box helicase family protein | - |
| NUG39_RS25680 (NUG39_25680) | 110237..113377 | - | 3141 | WP_004197497.1 | DNA methyltransferase | - |
| NUG39_RS25685 (NUG39_25685) | 113432..116395 | - | 2964 | WP_001568064.1 | SNF2-related protein | - |
| NUG39_RS25690 (NUG39_25690) | 116382..116627 | - | 246 | WP_001568063.1 | helix-turn-helix transcriptional regulator | - |
| NUG39_RS25695 (NUG39_25695) | 116895..117140 | + | 246 | Protein_120 | IS3 family transposase ISEhe3 | Transposase |
| NUG39_RS25700 (NUG39_25700) | 117208..118359 | + | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| NUG39_RS25705 (NUG39_25705) | 118368..119265 | + | 898 | Protein_122 | IS3 family transposase ISEhe3 | Transposase |
| NUG39_RS25710 (NUG39_25710) | 119281..119454 | + | 174 | Protein_123 | IS481 family transposase | - |
| NUG39_RS25715 (NUG39_25715) | 119638..120012 | - | 375 | WP_001568060.1 | hypothetical protein | - |
| NUG39_RS25720 (NUG39_25720) | 120068..120394 | - | 327 | WP_001568059.1 | hypothetical protein | - |
| NUG39_RS25725 (NUG39_25725) | 120391..121119 | - | 729 | WP_001568058.1 | plasmid SOS inhibition protein A | - |
| NUG39_RS25730 (NUG39_25730) | 121116..121547 | - | 432 | WP_001568057.1 | conjugation system SOS inhibitor PsiB | - |
| NUG39_RS25735 (NUG39_25735) | 121592..123649 | - | 2058 | WP_047066591.1 | ParB/RepB/Spo0J family partition protein | - |
| NUG39_RS25740 (NUG39_25740) | 123719..123967 | - | 249 | WP_001568055.1 | DUF905 domain-containing protein | - |
| NUG39_RS25745 (NUG39_25745) | 124016..124558 | - | 543 | WP_021314431.1 | single-stranded DNA-binding protein | - |
| NUG39_RS25750 (NUG39_25750) | 125387..125950 | - | 564 | WP_004152756.1 | methyltransferase | - |
| NUG39_RS25755 (NUG39_25755) | 125998..127353 | - | 1356 | WP_013054814.1 | DUF3560 domain-containing protein | - |
| NUG39_RS25760 (NUG39_25760) | 127405..127635 | - | 231 | WP_001568051.1 | hypothetical protein | - |
| NUG39_RS25765 (NUG39_25765) | 127727..127954 | - | 228 | WP_001568050.1 | hypothetical protein | - |
| NUG39_RS25770 (NUG39_25770) | 128634..128954 | - | 321 | WP_001568049.1 | hypothetical protein | - |
| NUG39_RS25775 (NUG39_25775) | 128989..129243 | - | 255 | WP_049139361.1 | DNA polymerase III subunit theta | - |
| NUG39_RS25780 (NUG39_25780) | 129428..129619 | - | 192 | WP_001568047.1 | hypothetical protein | - |
| NUG39_RS25785 (NUG39_25785) | 129662..130168 | - | 507 | WP_055316506.1 | antirestriction protein ArdA | - |
| NUG39_RS25790 (NUG39_25790) | 130211..130639 | - | 429 | WP_001568045.1 | antirestriction protein | - |
| NUG39_RS25795 (NUG39_25795) | 131320..132087 | - | 768 | WP_001568044.1 | hypothetical protein | - |
| NUG39_RS25800 (NUG39_25800) | 132141..132560 | - | 420 | WP_001568043.1 | DUF1380 domain-containing protein | - |
| NUG39_RS25805 (NUG39_25805) | 132570..132791 | - | 222 | WP_001568042.1 | hypothetical protein | - |
| NUG39_RS25810 (NUG39_25810) | 132791..133492 | - | 702 | WP_001568041.1 | DNA methylase | - |
| NUG39_RS25815 (NUG39_25815) | 133564..133733 | - | 170 | Protein_144 | hypothetical protein | - |
| NUG39_RS25820 (NUG39_25820) | 133929..134159 | - | 231 | WP_001568040.1 | hypothetical protein | - |
| NUG39_RS25825 (NUG39_25825) | 134222..134893 | - | 672 | WP_001568039.1 | plasmid partitioning/stability family protein | - |
| NUG39_RS25830 (NUG39_25830) | 134896..135867 | - | 972 | WP_001568038.1 | plasmid segregation protein ParM | - |
| NUG39_RS25835 (NUG39_25835) | 136101..136532 | + | 432 | WP_001568036.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| NUG39_RS25840 (NUG39_25840) | 136532..137803 | + | 1272 | WP_004197646.1 | Y-family DNA polymerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|