MGE detailed information
MGE type: Genomic_island MGE length: 9351 bp
Accession: NZ_CP102380 Location: 4229976..4239326 Organism: Escherichia coli strain BM28 Replicon: chromosome
Accession: NZ_CP102380 Location: 4229976..4239326 Organism: Escherichia coli strain BM28 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NR349_RS20430 (4226708) | 4226708..4227427 | - | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
| NR349_RS20435 (4227424) | 4227424..4229055 | - | 1632 | WP_001216477.1 | sensor histidine kinase | - |
| NR349_RS20440 (4229236) | 4229236..4229465 | + | 230 | Protein_3974 | (4Fe-4S)-binding protein | - |
| NR349_RS20445 (4229477) | 4229477..4229749 | + | 273 | WP_000405651.1 | GNAT family N-acetyltransferase | - |
| NR349_RS20450 (4229976) | 4229976..4230272 | + | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| NR349_RS20455 (4230300) | 4230300..4230473 | + | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| NR349_RS20460 (4230592) | 4230592..4232109 | - | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| NR349_RS20465 (4232346) | 4232346..4233803 | - | 1458 | WP_000856829.1 | dipeptide/tripeptide permease DtpC | - |
| NR349_RS20470 (4233862) | 4233862..4236009 | - | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| NR349_RS20475 (4236089) | 4236089..4237423 | - | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| NR349_RS20480 (4237788) | 4237788..4239326 | - | 1539 | WP_001187173.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| NR349_RS20490 (4240125) | 4240125..4240700 | - | 576 | WP_001188520.1 | transcriptional regulator | - |
| NR349_RS20495 (4240737) | 4240737..4242434 | - | 1698 | WP_262515039.1 | protein-disulfide reductase DsbD | - |
| NR349_RS20500 (4242431) | 4242431..4242748 | - | 318 | WP_262515040.1 | divalent cation tolerance protein CutA | - |
| NR349_RS20505 (4242864) | 4242864..4244166 | - | 1303 | Protein_3986 | anaerobic C4-dicarboxylate transporter DcuA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20087 | HG738867 | 4238430..4247780 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21458 | NC_007779 | 4357262..4366612 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23874 | NC_012759 | 4289342..4298692 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68443 | NZ_CP017979 | 4248154..4261393 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285032 | NZ_HG738867 | 4238430..4247780 | 0 |