MGE detailed information
MGE type: Prophage MGE length: 28934 bp
Accession: NZ_CP102378 Location: 1415377..1444310 Organism: Escherichia coli strain JB41 Replicon: chromosome
Accession: NZ_CP102378 Location: 1415377..1444310 Organism: Escherichia coli strain JB41 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NR351_RS06985 (1410883) | 1410883..1412409 | - | 1527 | WP_000062973.1 | p-aminobenzoyl-glutamate transporter | - |
| NR351_RS06990 (1412446) | 1412446..1413891 | - | 1446 | WP_001156451.1 | p-aminobenzoyl-glutamate hydrolase subunit AbgB | - |
| NR351_RS06995 (1413891) | 1413891..1415201 | - | 1311 | WP_000444929.1 | p-aminobenzoyl-glutamate hydrolase subunit AbgA | - |
| NR351_RS07000 (1415377) | 1415377..1416285 | + | 909 | WP_000885458.1 | LysR family transcriptional regulator | - |
| NR351_RS07005 (1416615) | 1416615..1417178 | + | 564 | WP_001046829.1 | DNA endonuclease SmrA | - |
| NR351_RS07010 (1417199) | 1417199..1418431 | - | 1233 | WP_000628058.1 | diguanylate cyclase DgcM | - |
| NR351_RS07015 (1418625) | 1418625..1418672 | + | 48 | WP_211180494.1 | protein YnaN | - |
| NR351_RS07020 (1418686) | 1418686..1419669 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| NR351_RS07025 (1420147) | 1420147..1421520 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| NR351_RS07030 (1421649) | 1421649..1422584 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| NR351_RS07035 (1422636) | 1422636..1423871 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| NR351_RS07040 (1423873) | 1423873..1424088 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| - (1424192) | 1424192..1424370 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1424192) | 1424192..1424370 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1424192) | 1424192..1424370 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1424192) | 1424192..1424370 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| NR351_RS07045 (1424167) | 1424167..1424376 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| NR351_RS07050 (1424369) | 1424369..1424563 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| NR351_RS07055 (1424620) | 1424620..1425429 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| NR351_RS07060 (1425422) | 1425422..1428022 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| NR351_RS07065 (1428124) | 1428124..1428399 | - | 276 | WP_000632297.1 | protein RacC | - |
| NR351_RS07070 (1428474) | 1428474..1428644 | - | 171 | WP_001352098.1 | YdaE family protein | - |
| NR351_RS07075 (1428644) | 1428644..1428865 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| NR351_RS07080 (1429307) | 1429307..1429795 | + | 489 | WP_001312793.1 | superinfection exclusion B family protein | - |
| NR351_RS07085 (1429792) | 1429792..1429947 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| NR351_RS07090 (1429958) | 1429958..1430092 | - | 135 | WP_000233809.1 | phage protein | - |
| NR351_RS07095 (1430401) | 1430401..1430877 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| NR351_RS07100 (1431001) | 1431001..1431297 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| NR351_RS07105 (1431320) | 1431320..1431742 | + | 423 | WP_000693797.1 | toxin YdaT family protein | - |
| NR351_RS07110 (1431755) | 1431755..1432612 | + | 858 | WP_000899748.1 | YdaU family protein | - |
| NR351_RS07115 (1432619) | 1432619..1433365 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| NR351_RS07120 (1433388) | 1433388..1433840 | + | 453 | Protein_1387 | DUF1627 domain-containing protein | - |
| NR351_RS07125 (1434036) | 1434036..1434221 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| NR351_RS07130 (1434418) | 1434418..1435875 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| NR351_RS07135 (1436013) | 1436013..1436276 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| NR351_RS07140 (1436257) | 1436257..1436616 | + | 360 | WP_000091628.1 | protein YdaY | - |
| NR351_RS07145 (1437090) | 1437090..1438022 | + | 933 | Protein_1392 | phage tail length tape measure family protein | - |
| NR351_RS07150 (1438025) | 1438025..1438240 | + | 216 | Protein_1393 | Ail/Lom family outer membrane beta-barrel protein | - |
| NR351_RS07155 (1438382) | 1438382..1439362 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| NR351_RS07160 (1439432) | 1439432..1439620 | + | 189 | Protein_1395 | Ail/Lom family outer membrane beta-barrel protein | - |
| NR351_RS07165 (1439685) | 1439685..1443047 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| NR351_RS07170 (1443047) | 1443047..1443622 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| NR351_RS07175 (1443720) | 1443720..1444310 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| NR351_RS07180 (1444627) | 1444627..1444860 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| NR351_RS07185 (1444929) | 1444929..1445042 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| NR351_RS07190 (1445821) | 1445821..1446255 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| NR351_RS07195 (1446396) | 1446396..1447529 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0.008 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0.008 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0.008 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0.008 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0.008 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0.008 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0.008 |