MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP101390 Location: 960414..971739 Organism: Salmonella enterica strain SC2017297 Replicon: chromosome
Accession: NZ_CP101390 Location: 960414..971739 Organism: Salmonella enterica strain SC2017297 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMU39_RS04685 (955860) | 955860..956958 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| NMU39_RS04690 (956968) | 956968..958485 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| NMU39_RS04695 (958561) | 958561..959106 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| NMU39_RS04700 (959371) | 959371..960129 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| NMU39_RS04710 (960414) | 960414..961220 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| NMU39_RS04715 (961495) | 961495..961746 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| NMU39_RS04720 (961923) | 961923..962150 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| NMU39_RS04725 (962150) | 962150..962548 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| NMU39_RS04730 (963354) | 963354..963890 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| NMU39_RS04735 (963937) | 963937..964569 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| NMU39_RS04740 (965288) | 965288..965872 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| NMU39_RS04745 (965992) | 965992..968481 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| NMU39_RS04750 (968522) | 968522..969265 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| NMU39_RS04755 (969262) | 969262..970338 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| NMU39_RS04760 (970482) | 970482..970994 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| NMU39_RS04765 (970981) | 970981..971739 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| NMU39_RS04770 (971949) | 971949..972815 | - | 867 | WP_000503682.1 | nickel/cobalt efflux protein RcnA | - |
| NMU39_RS04775 (972937) | 972937..973209 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| NMU39_RS04780 (973240) | 973240..974469 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| NMU39_RS04785 (974611) | 974611..975066 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| NMU39_RS04790 (975170) | 975170..976033 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |