MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP101373 Location: 928446..939771 Organism: Salmonella enterica strain SC2016042 Replicon: chromosome
Accession: NZ_CP101373 Location: 928446..939771 Organism: Salmonella enterica strain SC2016042 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMU32_RS04490 (923892) | 923892..924990 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| NMU32_RS04495 (925000) | 925000..926517 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| NMU32_RS04500 (926593) | 926593..927138 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| NMU32_RS04505 (927403) | 927403..928161 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| NMU32_RS04515 (928446) | 928446..929252 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| NMU32_RS04520 (929527) | 929527..929778 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| NMU32_RS04525 (929955) | 929955..930182 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| NMU32_RS04530 (930182) | 930182..930580 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| NMU32_RS04535 (931386) | 931386..931922 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| NMU32_RS04540 (931969) | 931969..932601 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| NMU32_RS04545 (933320) | 933320..933904 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| NMU32_RS04550 (934024) | 934024..936513 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| NMU32_RS04555 (936554) | 936554..937297 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| NMU32_RS04560 (937294) | 937294..938370 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| NMU32_RS04565 (938514) | 938514..939026 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| NMU32_RS04570 (939013) | 939013..939771 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| NMU32_RS04575 (939981) | 939981..940847 | - | 867 | WP_000503682.1 | nickel/cobalt efflux protein RcnA | - |
| NMU32_RS04580 (940969) | 940969..941241 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| NMU32_RS04585 (941272) | 941272..942501 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| NMU32_RS04590 (942643) | 942643..943098 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| NMU32_RS04595 (943202) | 943202..944065 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |