MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP100739 Location: 847680..859005 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain R18.0292 Replicon: chromosome
Accession: NZ_CP100739 Location: 847680..859005 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain R18.0292 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL736_RS04060 (843126) | 843126..844224 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| NL736_RS04065 (844234) | 844234..845751 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| NL736_RS04070 (845827) | 845827..846372 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| NL736_RS04075 (846637) | 846637..847395 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| NL736_RS04085 (847680) | 847680..848486 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| NL736_RS04090 (848761) | 848761..849012 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| NL736_RS04095 (849189) | 849189..849416 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| NL736_RS04100 (849416) | 849416..849814 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| NL736_RS04105 (850620) | 850620..851156 | + | 537 | WP_001038506.1 | hypothetical protein | VF |
| NL736_RS04110 (851203) | 851203..851835 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| NL736_RS04115 (852554) | 852554..853138 | + | 585 | WP_001244638.1 | hypothetical protein | VF |
| NL736_RS04120 (853258) | 853258..855747 | + | 2490 | WP_000705483.1 | hypothetical protein | VF |
| NL736_RS04125 (855788) | 855788..856531 | + | 744 | WP_000798504.1 | hypothetical protein | VF |
| NL736_RS04130 (856528) | 856528..857604 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| NL736_RS04135 (857748) | 857748..858260 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| NL736_RS04140 (858247) | 858247..859005 | + | 759 | WP_024159577.1 | transcriptional regulator | - |
| NL736_RS04145 (859215) | 859215..860063 | - | 849 | WP_000503687.1 | nickel/cobalt efflux protein RcnA | - |
| NL736_RS04150 (860185) | 860185..860457 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| NL736_RS04155 (860488) | 860488..861717 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| NL736_RS04160 (861859) | 861859..862314 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| NL736_RS04165 (862418) | 862418..863281 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.001 |