MGE detailed information
MGE type: Conjugative plasmid MGE length: 109442 bp
Accession: NZ_CP098742 Location: 1..109442 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain HJL222 Replicon: plasmid unnamed1
Accession: NZ_CP098742 Location: 1..109442 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain HJL222 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NCG87_RS23370 (261) | 261..491 | + | 231 | WP_001261286.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| NCG87_RS23375 (488) | 488..904 | + | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| NCG87_RS23380 (979) | 979..2544 | + | 1566 | WP_001128474.1 | AAA family ATPase | - |
| NCG87_RS23385 (2529) | 2529..3551 | + | 1023 | WP_000361402.1 | helicase UvrD | - |
| NCG87_RS23395 (4882) | 4882..7083 | - | 2202 | WP_000973519.1 | Ferric aerobactin receptor | VF |
| NCG87_RS23400 (7109) | 7109..8442 | - | 1334 | Protein_6 | L-lysine N6-monooxygenase | VF |
| NCG87_RS23405 (8439) | 8439..10181 | - | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| NCG87_RS23410 (10181) | 10181..11128 | - | 948 | WP_000011908.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| NCG87_RS23415 (11129) | 11129..12853 | - | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| NCG87_RS23420 (12989) | 12989..14182 | + | 1194 | WP_000095526.1 | MFS transporter | - |
| NCG87_RS23425 (14562) | 14562..14942 | - | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| NCG87_RS23430 (15283) | 15283..15696 | - | 414 | Protein_12 | phosphopyruvate hydratase | - |
| NCG87_RS23435 (15694) | 15694..15951 | + | 258 | Protein_13 | Tn3 family transposase | - |
| NCG87_RS23440 (16186) | 16186..17043 | - | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| NCG87_RS23445 (17040) | 17040..17897 | - | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| NCG87_RS23450 (17894) | 17894..18721 | - | 828 | WP_000983710.1 | Manganese transport system ATP-binding protein MntB | VF |
| NCG87_RS23455 (18721) | 18721..19611 | - | 891 | WP_001368304.1 | putative periplasmic iron-binding protein | VF |
| NCG87_RS23460 (19991) | 19991..20688 | + | 698 | WP_223155668.1 | IS1-like element IS1A family transposase | - |
| NCG87_RS23465 (20868) | 20868..21381 | - | 514 | Protein_19 | DUF4113 domain-containing protein | - |
| NCG87_RS23470 (21442) | 21442..21546 | - | 105 | Protein_20 | AAA family ATPase | - |
| NCG87_RS23475 (21548) | 21548..21871 | - | 324 | Protein_21 | IS21 family transposase IS21 | Transposase |
| NCG87_RS23480 (22617) | 22617..23594 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| NCG87_RS23485 (23879) | 23879..24619 | - | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| NCG87_RS23490 (24740) | 24740..24922 | - | 183 | WP_042344623.1 | hypothetical protein | - |
| NCG87_RS23495 (24989) | 24989..25278 | - | 290 | Protein_25 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| NCG87_RS23500 (25265) | 25265..25533 | - | 269 | Protein_26 | type II toxin-antitoxin system ParD family antitoxin | - |
| NCG87_RS23505 (26065) | 26065..27234 | + | 1170 | WP_001072355.1 | hypothetical protein | - |
| NCG87_RS23510 (27267) | 27267..27395 | + | 129 | Protein_28 | IS481 family transposase | - |
| NCG87_RS23515 (27666) | 27666..28363 | + | 698 | WP_095033700.1 | IS1-like element IS1B family transposase | - |
| NCG87_RS23520 (28360) | 28360..28623 | + | 264 | WP_049802299.1 | antibiotic biosynthesis monooxygenase | - |
| NCG87_RS23525 (28616) | 28616..29002 | + | 387 | WP_000460651.1 | hypothetical protein | - |
| NCG87_RS23530 (29010) | 29010..29696 | + | 687 | WP_001284954.1 | winged helix-turn-helix domain-containing protein | - |
| NCG87_RS23535 (29674) | 29674..30297 | - | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| NCG87_RS23540 (30379) | 30379..31584 | + | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| NCG87_RS23545 (31697) | 31697..32290 | - | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| NCG87_RS23550 (32378) | 32378..32764 | + | 387 | Protein_36 | Transposon Tn10 TetD protein | VF |
| NCG87_RS23555 (32835) | 32835..33539 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| NCG87_RS23560 (33605) | 33605..34150 | + | 546 | Protein_38 | Tn3 family transposase TnpA_Tn3 | Transposase |
| NCG87_RS23565 (34186) | 34186..34601 | - | 416 | Protein_39 | IS1-like element IS1B family transposase | - |
| NCG87_RS23570 (34850) | 34850..35251 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| NCG87_RS23575 (35184) | 35184..35441 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| NCG87_RS23580 (35534) | 35534..36187 | - | 654 | WP_000616800.1 | type II CAAX endopeptidase family protein | - |
| NCG87_RS23585 (37125) | 37125..37982 | - | 858 | WP_000130643.1 | incFII family plasmid replication initiator RepA | - |
| NCG87_RS23590 (37975) | 37975..38049 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| NCG87_RS23595 (38287) | 38287..38541 | - | 255 | WP_000083830.1 | replication regulatory protein RepA | - |
| NCG87_RS23600 (38781) | 38781..39371 | - | 591 | WP_000766807.1 | DUF2726 domain-containing protein | - |
| NCG87_RS23605 (39409) | 39409..39618 | - | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| NCG87_RS23610 (39664) | 39664..40125 | - | 462 | WP_001233838.1 | thermonuclease family protein | - |
| NCG87_RS23615 (40370) | 40370..40582 | - | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| NCG87_RS23620 (40711) | 40711..41271 | - | 561 | WP_000139323.1 | fertility inhibition protein FinO | - |
| NCG87_RS23625 (41374) | 41374..42234 | - | 861 | WP_000704523.1 | Quorum-quenching protein AidA | VF |
| NCG87_RS23630 (42293) | 42293..43039 | - | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| NCG87_RS23635 (43059) | 43059..48329 | - | 5271 | WP_000948354.1 | Multifunctional conjugation protein TraI | Relaxase |
| NCG87_RS23640 (48329) | 48329..50608 | - | 2280 | WP_087760849.1 | Coupling protein TraD | VF |
| NCG87_RS23645 (50659) | 50659..51396 | - | 738 | WP_000199905.1 | hypothetical protein | - |
| NCG87_RS23650 (51599) | 51599..52330 | - | 732 | WP_000782451.1 | conjugal transfer complement resistance protein TraT | - |
| NCG87_RS23655 (52379) | 52379..52864 | - | 486 | WP_000605870.1 | hypothetical protein | - |
| NCG87_RS23660 (52880) | 52880..55702 | - | 2823 | WP_001007039.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| NCG87_RS23665 (55699) | 55699..57072 | - | 1374 | WP_000944331.1 | conjugal transfer pilus assembly protein TraH | - |
| NCG87_RS23670 (57059) | 57059..57451 | - | 393 | WP_000660699.1 | F-type conjugal transfer protein TrbF | - |
| NCG87_RS23675 (57432) | 57432..57779 | - | 348 | WP_001309242.1 | P-type conjugative transfer protein TrbJ | - |
| NCG87_RS23680 (57709) | 57709..58254 | - | 546 | WP_000059831.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| NCG87_RS23685 (58241) | 58241..58525 | - | 285 | WP_000624194.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| NCG87_RS23690 (58644) | 58644..58988 | - | 345 | WP_000556796.1 | conjugal transfer protein TrbA | - |
| NCG87_RS23695 (59002) | 59002..59745 | - | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| NCG87_RS23700 (59738) | 59738..59995 | - | 258 | WP_000864353.1 | conjugal transfer protein TrbE | - |
| NCG87_RS23705 (60022) | 60022..61872 | - | 1851 | WP_000821856.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| NCG87_RS23710 (61869) | 61869..62507 | - | 639 | WP_001080256.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| NCG87_RS23715 (62516) | 62516..62821 | - | 306 | WP_000224416.1 | hypothetical protein | - |
| NCG87_RS23720 (62851) | 62851..63843 | - | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| NCG87_RS23725 (63840) | 63840..64472 | - | 633 | WP_001203728.1 | type-F conjugative transfer system protein TraW | - |
| NCG87_RS23730 (64469) | 64469..64855 | - | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| NCG87_RS23735 (64852) | 64852..67482 | - | 2631 | WP_000069777.1 | type IV secretion system protein TraC | - |
| NCG87_RS23740 (67608) | 67608..67955 | - | 348 | WP_000836682.1 | hypothetical protein | - |
| NCG87_RS23745 (67983) | 67983..68201 | - | 219 | WP_000556745.1 | hypothetical protein | - |
| NCG87_RS23750 (68281) | 68281..68754 | - | 474 | WP_000549568.1 | hypothetical protein | - |
| NCG87_RS23755 (68747) | 68747..69160 | - | 414 | WP_000549589.1 | hypothetical protein | - |
| NCG87_RS23760 (69153) | 69153..69374 | - | 222 | WP_001278683.1 | conjugal transfer protein TraR | - |
| NCG87_RS23765 (69509) | 69509..70024 | - | 516 | WP_000809881.1 | type IV conjugative transfer system lipoprotein TraV | - |
| NCG87_RS23770 (70021) | 70021..70341 | - | 321 | WP_001057307.1 | conjugal transfer protein TrbD | - |
| NCG87_RS23775 (70328) | 70328..70894 | - | 567 | WP_000896599.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| NCG87_RS23780 (70884) | 70884..72335 | - | 1452 | WP_000146675.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| NCG87_RS23785 (72335) | 72335..73063 | - | 729 | WP_001230772.1 | type-F conjugative transfer system secretin TraK | - |
| NCG87_RS23790 (73050) | 73050..73616 | - | 567 | WP_000399780.1 | type IV conjugative transfer system protein TraE | - |
| NCG87_RS23795 (73638) | 73638..73949 | - | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| NCG87_RS23800 (73964) | 73964..74323 | - | 360 | WP_001098992.1 | type IV conjugative transfer system pilin TraA | - |
| NCG87_RS23805 (74356) | 74356..74583 | - | 228 | WP_000089263.1 | conjugal transfer relaxosome protein TraY | - |
| NCG87_RS23810 (74720) | 74720..75391 | - | 672 | WP_000283561.1 | conjugal transfer transcriptional regulator TraJ | - |
| NCG87_RS23815 (75585) | 75585..75968 | - | 384 | WP_001354030.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| NCG87_RS23820 (76303) | 76303..76893 | + | 591 | WP_000252683.1 | hypothetical protein | VF |
| NCG87_RS23825 (77190) | 77190..78011 | - | 822 | WP_001234445.1 | DUF932 domain-containing protein | - |
| NCG87_RS23830 (78122) | 78122..78418 | - | 297 | WP_001272251.1 | hypothetical protein | - |
| NCG87_RS23835 (78718) | 78718..79014 | + | 297 | Protein_93 | hypothetical protein | - |
| NCG87_RS23840 (79333) | 79333..79458 | - | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| NCG87_RS23845 (79400) | 79400..79549 | - | 150 | Protein_95 | plasmid maintenance protein Mok | - |
| - (79535) | 79535..79759 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (79535) | 79535..79759 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (79535) | 79535..79759 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (79535) | 79535..79759 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| NCG87_RS23850 (79771) | 79771..80490 | - | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| NCG87_RS23855 (80487) | 80487..80921 | - | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| NCG87_RS23860 (80990) | 80990..83013 | - | 2024 | Protein_98 | ParB/RepB/Spo0J family partition protein | - |
| NCG87_RS23865 (83079) | 83079..83312 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| NCG87_RS23870 (83375) | 83375..83914 | - | 540 | WP_000290841.1 | single-stranded DNA-binding protein | - |
| NCG87_RS23875 (83940) | 83940..84146 | - | 207 | WP_000547975.1 | hypothetical protein | - |
| NCG87_RS23880 (84387) | 84387..84668 | - | 282 | WP_072277694.1 | hypothetical protein | - |
| NCG87_RS23885 (84557) | 84557..84793 | - | 237 | WP_032153960.1 | hypothetical protein | - |
| NCG87_RS23890 (84819) | 84819..85382 | - | 564 | WP_001348621.1 | class I SAM-dependent methyltransferase | - |
| NCG87_RS23895 (85430) | 85430..86791 | - | 1362 | WP_000170714.1 | DUF3560 domain-containing protein | - |
| NCG87_RS23900 (86843) | 86843..87073 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| NCG87_RS23905 (88108) | 88108..88299 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| NCG87_RS23910 (88296) | 88296..88718 | - | 423 | WP_000271753.1 | DUF1380 family protein | - |
| NCG87_RS23915 (88765) | 88765..89190 | - | 426 | WP_001198928.1 | antirestriction protein | - |
| NCG87_RS23920 (89651) | 89651..90763 | + | 1113 | WP_001300563.1 | IS4 family transposase IS421 | Transposase |
| NCG87_RS23925 (90956) | 90956..91732 | - | 777 | WP_001753849.1 | hypothetical protein | - |
| NCG87_RS23930 (91783) | 91783..92301 | - | 519 | WP_123325260.1 | DUF1380 family protein | - |
| NCG87_RS23935 (92231) | 92231..92452 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| NCG87_RS23940 (92453) | 92453..93136 | - | 684 | WP_000086185.1 | DNA methylase | - |
| NCG87_RS23945 (93213) | 93213..93524 | - | 312 | WP_011254640.1 | hypothetical protein | - |
| NCG87_RS23950 (93521) | 93521..94423 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| NCG87_RS23955 (95290) | 95290..96261 | - | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| NCG87_RS23960 (96261) | 96261..97427 | - | 1167 | WP_000772446.1 | hypothetical protein | VF |
| NCG87_RS23965 (98015) | 98015..98770 | - | 756 | WP_000852145.1 | replication initiation protein RepE | - |
| NCG87_RS23970 (99544) | 99544..100350 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| NCG87_RS23975 (100351) | 100351..100656 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| NCG87_RS23980 (100658) | 100658..100876 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| NCG87_RS23985 (101467) | 101467..101955 | + | 489 | WP_011254646.1 | hypothetical protein | - |
| NCG87_RS23990 (101989) | 101989..103122 | - | 1134 | WP_000545987.1 | DUF3800 domain-containing protein | - |
| NCG87_RS23995 (103289) | 103289..104062 | - | 774 | WP_000905949.1 | hypothetical protein | - |
| NCG87_RS24000 (104075) | 104075..104575 | - | 501 | WP_000528931.1 | HEPN family nuclease | - |
| NCG87_RS24005 (104840) | 104840..105070 | + | 231 | WP_001261278.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| NCG87_RS24010 (105067) | 105067..105483 | + | 417 | WP_001034046.1 | type II toxin-antitoxin system VapC family toxin | - |
| NCG87_RS24015 (105528) | 105528..109322 | - | 3795 | WP_001144732.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|