MGE detailed information
MGE type: Conjugative plasmid MGE length: 121118 bp
Accession: NZ_CP098179 Location: 1..121118 Organism: Escherichia coli strain Z0117EC0148 Replicon: plasmid pZ0117EC0148-1
Accession: NZ_CP098179 Location: 1..121118 Organism: Escherichia coli strain Z0117EC0148 Replicon: plasmid pZ0117EC0148-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY28_RS23460 (1290) | 1290..1517 | + | 228 | WP_000450520.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| NBY28_RS23465 (1517) | 1517..1915 | + | 399 | WP_000911313.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| NBY28_RS23470 (1924) | 1924..4077 | - | 2154 | WP_000009324.1 | type IV conjugative transfer system coupling protein TraD | - |
| NBY28_RS23475 (4330) | 4330..5061 | - | 732 | WP_023565183.1 | conjugal transfer complement resistance protein TraT | - |
| NBY28_RS23480 (5093) | 5093..5590 | - | 498 | WP_000605857.1 | entry exclusion protein | - |
| NBY28_RS23485 (5606) | 5606..8428 | - | 2823 | WP_001007018.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| NBY28_RS23490 (8425) | 8425..9798 | - | 1374 | WP_001517790.1 | conjugal transfer pilus assembly protein TraH | - |
| NBY28_RS23495 (9798) | 9798..10178 | - | 381 | WP_001389370.1 | F-type conjugal transfer protein TrbF | - |
| NBY28_RS23500 (10165) | 10165..10506 | - | 342 | WP_001443031.1 | P-type conjugative transfer protein TrbJ | - |
| NBY28_RS23505 (10436) | 10436..10981 | - | 546 | WP_000059851.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| NBY28_RS23510 (10968) | 10968..11252 | - | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| NBY28_RS23515 (11333) | 11333..11647 | + | 315 | WP_001324103.1 | hypothetical protein | - |
| NBY28_RS23520 (11649) | 11649..11996 | - | 348 | WP_001287910.1 | conjugal transfer protein TrbA | - |
| NBY28_RS23525 (12012) | 12012..12755 | - | 744 | WP_001030393.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| NBY28_RS23530 (12748) | 12748..13005 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| NBY28_RS23535 (13032) | 13032..14840 | - | 1809 | WP_000821841.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| NBY28_RS23540 (14837) | 14837..15475 | - | 639 | WP_000777700.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| NBY28_RS23545 (15484) | 15484..16476 | - | 993 | WP_000830183.1 | conjugal transfer pilus assembly protein TraU | - |
| NBY28_RS23550 (16473) | 16473..17105 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| NBY28_RS23555 (17102) | 17102..17488 | - | 387 | WP_000099686.1 | type-F conjugative transfer system protein TrbI | - |
| NBY28_RS23560 (17485) | 17485..20112 | - | 2628 | WP_001064245.1 | type IV secretion system protein TraC | - |
| NBY28_RS23565 (20272) | 20272..20493 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| NBY28_RS23570 (20628) | 20628..21143 | - | 516 | WP_000809838.1 | type IV conjugative transfer system lipoprotein TraV | - |
| NBY28_RS23575 (21140) | 21140..21391 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| NBY28_RS23580 (21403) | 21403..21600 | - | 198 | WP_001324648.1 | conjugal transfer protein TrbD | - |
| NBY28_RS23585 (21587) | 21587..22177 | - | 591 | WP_001376242.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| NBY28_RS23590 (22167) | 22167..23594 | - | 1428 | WP_000146685.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| NBY28_RS23595 (23594) | 23594..24322 | - | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| NBY28_RS23600 (24309) | 24309..24875 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| NBY28_RS23605 (24897) | 24897..25208 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| NBY28_RS23610 (25223) | 25223..25588 | - | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| NBY28_RS23615 (25621) | 25621..26022 | - | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| NBY28_RS23620 (26115) | 26115..26804 | - | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| NBY28_RS23625 (26991) | 26991..27374 | - | 384 | WP_001151524.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| NBY28_RS23630 (27707) | 27707..28297 | + | 591 | WP_001376243.1 | hypothetical protein | VF |
| NBY28_RS23635 (28594) | 28594..29415 | - | 822 | WP_001234426.1 | DUF932 domain-containing protein | - |
| NBY28_RS23640 (29533) | 29533..29820 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| NBY28_RS23645 (29845) | 29845..30051 | - | 207 | WP_000547968.1 | hypothetical protein | - |
| NBY28_RS23650 (30121) | 30121..30293 | + | 173 | Protein_39 | hypothetical protein | - |
| NBY28_RS23655 (30291) | 30291..30521 | - | 231 | WP_071586998.1 | hypothetical protein | - |
| NBY28_RS23660 (30741) | 30741..30866 | - | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| NBY28_RS23665 (30808) | 30808..30957 | - | 150 | Protein_42 | plasmid maintenance protein Mok | - |
| - (30943) | 30943..31167 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (30943) | 30943..31167 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (30943) | 30943..31167 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (30943) | 30943..31167 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| NBY28_RS23670 (30979) | 30979..31167 | + | 189 | WP_001299721.1 | hypothetical protein | - |
| NBY28_RS23675 (31136) | 31136..31898 | - | 763 | Protein_44 | plasmid SOS inhibition protein A | - |
| NBY28_RS23680 (31895) | 31895..32329 | - | 435 | WP_000845936.1 | conjugation system SOS inhibitor PsiB | - |
| NBY28_RS23685 (32384) | 32384..32581 | - | 198 | Protein_46 | hypothetical protein | - |
| NBY28_RS23690 (32609) | 32609..32842 | - | 234 | WP_000005987.1 | DUF905 family protein | - |
| NBY28_RS23695 (32910) | 32910..33449 | - | 540 | WP_000290840.1 | single-stranded DNA-binding protein | - |
| NBY28_RS23700 (33475) | 33475..33681 | - | 207 | WP_000275856.1 | hypothetical protein | - |
| NBY28_RS23705 (33751) | 33751..33831 | + | 81 | Protein_50 | hypothetical protein | - |
| NBY28_RS23710 (34014) | 34014..34183 | - | 170 | Protein_51 | hypothetical protein | - |
| NBY28_RS23715 (34820) | 34820..35791 | - | 972 | WP_000817028.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| NBY28_RS23720 (35791) | 35791..36957 | - | 1167 | WP_001238646.1 | hypothetical protein | VF |
| NBY28_RS23730 (38439) | 38439..40640 | - | 2202 | WP_000973520.1 | Ferric aerobactin receptor | VF |
| NBY28_RS23735 (40666) | 40666..41999 | - | 1334 | Protein_56 | L-lysine N6-monooxygenase | VF |
| NBY28_RS23740 (41996) | 41996..43738 | - | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| NBY28_RS23745 (43738) | 43738..44685 | - | 948 | WP_000011910.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| NBY28_RS23750 (44686) | 44686..46410 | - | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| NBY28_RS23755 (46546) | 46546..47739 | + | 1194 | WP_000095526.1 | MFS transporter | - |
| NBY28_RS23760 (48119) | 48119..48499 | - | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| NBY28_RS23765 (48840) | 48840..49253 | - | 414 | Protein_62 | phosphopyruvate hydratase | - |
| NBY28_RS23770 (49251) | 49251..49508 | + | 258 | Protein_63 | Tn3 family transposase | - |
| NBY28_RS23775 (49742) | 49742..50599 | - | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| NBY28_RS23780 (50596) | 50596..51453 | - | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| NBY28_RS23785 (51450) | 51450..52277 | - | 828 | WP_000983710.1 | Manganese transport system ATP-binding protein MntB | VF |
| NBY28_RS23790 (52277) | 52277..53191 | - | 915 | WP_000949004.1 | putative periplasmic iron-binding protein | VF |
| NBY28_RS23795 (53547) | 53547..54244 | + | 698 | WP_223155668.1 | IS1-like element IS1A family transposase | - |
| NBY28_RS23800 (54424) | 54424..54937 | - | 514 | Protein_69 | DUF4113 domain-containing protein | - |
| NBY28_RS23805 (54998) | 54998..55102 | - | 105 | Protein_70 | AAA family ATPase | - |
| NBY28_RS23810 (55104) | 55104..55427 | - | 324 | Protein_71 | IS21 family transposase IS21 | Transposase |
| NBY28_RS23815 (56173) | 56173..57150 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| NBY28_RS23820 (57435) | 57435..58175 | - | 741 | WP_001066954.1 | tyrosine-type recombinase/integrase | - |
| NBY28_RS23825 (58296) | 58296..58484 | - | 189 | WP_001324033.1 | hypothetical protein | - |
| NBY28_RS23830 (58858) | 58858..59760 | - | 903 | WP_001312822.1 | hypothetical protein | VF |
| NBY28_RS23835 (59829) | 59829..60938 | - | 1110 | WP_000771475.1 | SDR family oxidoreductase | - |
| NBY28_RS23840 (61371) | 61371..62324 | - | 954 | WP_000280980.1 | Protease 7 | VF |
| NBY28_RS23845 (63621) | 63621..63800 | - | 180 | Protein_78 | integrase core domain-containing protein | - |
| NBY28_RS23850 (63939) | 63939..64229 | + | 291 | Protein_79 | IS3 family transposase IS1203 | Transposase |
| NBY28_RS23855 (64297) | 64297..64994 | + | 698 | WP_103215986.1 | IS1-like element IS1A family transposase | - |
| NBY28_RS23860 (65045) | 65045..65193 | - | 149 | Protein_81 | Rz1 family lipoprotein | - |
| NBY28_RS23865 (65150) | 65150..65257 | - | 108 | Protein_82 | lysis system i-spanin subunit Rz | - |
| NBY28_RS23870 (65772) | 65772..66796 | + | 1025 | Protein_83 | integrase core domain-containing protein | - |
| NBY28_RS23875 (68107) | 68107..69222 | + | 1116 | WP_001318220.1 | Elloramycin glycosyltransferase ElmGT | VF |
| NBY28_RS23880 (69362) | 69362..73021 | + | 3660 | WP_001111199.1 | Multidrug efflux ATP-binding/permease protein | VF |
| NBY28_RS23885 (73125) | 73125..74354 | + | 1230 | WP_001552738.1 | Enterochelin esterase | VF |
| NBY28_RS23890 (74439) | 74439..75395 | + | 957 | WP_000271276.1 | hypothetical protein | VF |
| NBY28_RS23895 (75440) | 75440..77617 | - | 2178 | WP_072657522.1 | Ferric enterobactin receptor | VF |
| NBY28_RS23900 (78472) | 78472..79365 | - | 894 | WP_230278509.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| NBY28_RS23910 (80165) | 80165..80239 | - | 75 | Protein_91 | colicin | - |
| NBY28_RS23915 (80217) | 80217..80453 | - | 237 | WP_014640552.1 | colicin V immunity protein | - |
| NBY28_RS23920 (80995) | 80995..81198 | - | 204 | Protein_93 | hypothetical protein | - |
| NBY28_RS23925 (81371) | 81371..81538 | + | 168 | Protein_94 | colicin-B | - |
| NBY28_RS23930 (81556) | 81556..82083 | - | 528 | WP_000203272.1 | colicin B immunity protein | - |
| NBY28_RS23935 (82327) | 82327..83142 | + | 816 | WP_001312845.1 | lipid II-degrading bacteriocin colicin M | - |
| NBY28_RS23940 (83192) | 83192..83545 | - | 354 | WP_000864812.1 | colicin M immunity protein | - |
| NBY28_RS23945 (83723) | 83723..84514 | - | 792 | WP_000016493.1 | site-specific integrase | - |
| NBY28_RS23950 (84511) | 84511..85200 | - | 690 | WP_000796228.1 | hypothetical protein | - |
| NBY28_RS23955 (85244) | 85244..85594 | - | 351 | WP_000493379.1 | hypothetical protein | - |
| NBY28_RS23960 (86165) | 86165..86425 | + | 261 | WP_000343102.1 | hypothetical protein | - |
| NBY28_RS23965 (86422) | 86422..87012 | + | 591 | WP_000194555.1 | hypothetical protein | - |
| NBY28_RS23970 (87030) | 87030..87377 | - | 348 | WP_000142424.1 | DUF6404 family protein | - |
| NBY28_RS23975 (87496) | 87496..87843 | + | 348 | WP_000762580.1 | colicin E1 family microcin immunity protein | - |
| NBY28_RS23980 (87861) | 87861..89741 | - | 1881 | WP_001283356.1 | colicin Ia central receptor-binding domain-containing protein | - |
| NBY28_RS23985 (90020) | 90020..91366 | - | 1347 | WP_001132019.1 | protein YagA | - |
| NBY28_RS23990 (91720) | 91720..92322 | + | 603 | WP_000517689.1 | ProQ/FINO family protein | - |
| NBY28_RS23995 (92378) | 92378..92872 | + | 495 | WP_001442119.1 | hypothetical protein | - |
| NBY28_RS24000 (92872) | 92872..93138 | + | 267 | WP_000627831.1 | hypothetical protein | - |
| NBY28_RS24005 (93615) | 93615..94106 | - | 492 | WP_000068661.1 | hypothetical protein | - |
| NBY28_RS24010 (94040) | 94040..96319 | - | 2280 | Protein_111 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| NBY28_RS24015 (96383) | 96383..97087 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| NBY28_RS24020 (97140) | 97140..98669 | - | 1530 | Protein_113 | Tn3 family transposase TnpA_Tn3 | Transposase |
| NBY28_RS24025 (98833) | 98833..99390 | + | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| NBY28_RS24030 (99573) | 99573..100433 | + | 861 | WP_015058868.1 | Beta-lactamase TEM | ARG |
| NBY28_RS24035 (100581) | 100581..100838 | + | 258 | Protein_116 | Tn3 family transposase | - |
| NBY28_RS24040 (100896) | 100896..101138 | + | 243 | WP_000844627.1 | transposase | - |
| NBY28_RS24045 (101170) | 101170..101820 | - | 651 | WP_001493764.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| NBY28_RS24050 (101926) | 101926..103125 | + | 1200 | WP_001493765.1 | Tetracycline resistance protein, class C | ARG |
| NBY28_RS24055 (103157) | 103157..104041 | - | 885 | WP_000058717.1 | EamA family transporter | - |
| NBY28_RS24060 (104179) | 104179..104571 | - | 393 | WP_001351729.1 | isochorismatase family cysteine hydrolase | - |
| NBY28_RS24065 (104575) | 104575..105324 | + | 750 | Protein_122 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| NBY28_RS24070 (105348) | 105348..105953 | - | 606 | WP_000509965.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| NBY28_RS24075 (106048) | 106048..108945 | + | 2898 | WP_001553819.1 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| NBY28_RS24080 (109082) | 109082..109483 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| NBY28_RS24085 (109416) | 109416..109673 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| NBY28_RS24090 (109766) | 109766..110419 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| NBY28_RS24095 (110517) | 110517..110657 | - | 141 | WP_001333237.1 | hypothetical protein | - |
| NBY28_RS24100 (111358) | 111358..112215 | - | 858 | WP_000774297.1 | incFII family plasmid replication initiator RepA | - |
| NBY28_RS24105 (112208) | 112208..112690 | - | 483 | WP_001273588.1 | hypothetical protein | - |
| NBY28_RS24110 (112683) | 112683..112730 | - | 48 | WP_229471593.1 | hypothetical protein | - |
| NBY28_RS24115 (112721) | 112721..112972 | + | 252 | WP_223195197.1 | replication protein RepA | - |
| NBY28_RS24120 (112989) | 112989..113246 | - | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| NBY28_RS24125 (113530) | 113530..113679 | - | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| - (113723) | 113723..113784 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (113723) | 113723..113784 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (113723) | 113723..113784 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (113723) | 113723..113784 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| NBY28_RS24130 (114040) | 114040..114114 | - | 75 | Protein_135 | endonuclease | - |
| NBY28_RS24135 (114360) | 114360..114572 | - | 213 | WP_001299730.1 | ANR family transcriptional regulator | - |
| NBY28_RS24140 (114708) | 114708..115268 | - | 561 | WP_000139315.1 | fertility inhibition protein FinO | - |
| NBY28_RS24145 (115371) | 115371..116231 | - | 861 | WP_000704513.1 | Quorum-quenching protein AidA | VF |
| NBY28_RS24150 (116290) | 116290..117036 | - | 747 | WP_000205749.1 | conjugal transfer pilus acetylase TraX | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|