MGE detailed information
MGE type: Prophage MGE length: 53653 bp
Accession: NZ_CP097527 Location: 4377657..4431309 Organism: Pseudomonas putida strain KT2440 isolate pnCas9-BEC6-C Replicon: chromosome
Accession: NZ_CP097527 Location: 4377657..4431309 Organism: Pseudomonas putida strain KT2440 isolate pnCas9-BEC6-C Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M8001_RS20195 (M8001_20165) | 4372998..4374968 | + | 1971 | WP_061405675.1 | calcium-binding protein | - |
| M8001_RS20200 (M8001_20170) | 4375047..4375292 | - | 246 | WP_049587960.1 | hypothetical protein | - |
| M8001_RS20205 (M8001_20175) | 4375289..4375582 | - | 294 | WP_049587959.1 | hypothetical protein | - |
| M8001_RS20210 (M8001_20180) | 4375656..4375880 | - | 225 | WP_049587957.1 | hypothetical protein | - |
| M8001_RS20215 (M8001_20185) | 4376095..4377582 | - | 1488 | WP_061405677.1 | sialidase family protein | - |
| M8001_RS20220 (M8001_20190) | 4377657..4378187 | - | 531 | WP_049587950.1 | DUF2514 domain-containing protein | - |
| M8001_RS20225 (M8001_20195) | 4378184..4378723 | - | 540 | WP_010954681.1 | glycoside hydrolase family 104 protein | - |
| M8001_RS20230 (M8001_20200) | 4378812..4379180 | + | 369 | WP_061405678.1 | YceK/YidQ family lipoprotein | - |
| M8001_RS20235 (M8001_20205) | 4379125..4379349 | - | 225 | WP_010954682.1 | hypothetical protein | - |
| M8001_RS20240 (M8001_20210) | 4379772..4380536 | - | 765 | WP_010954683.1 | hypothetical protein | - |
| M8001_RS20245 (M8001_20215) | 4380548..4382800 | - | 2253 | WP_010954684.1 | hypothetical protein | - |
| M8001_RS20250 (M8001_20220) | 4382868..4383059 | - | 192 | WP_049587948.1 | hypothetical protein | - |
| M8001_RS20255 (M8001_20225) | 4383062..4383865 | - | 804 | WP_010954685.1 | tail protein | - |
| M8001_RS20260 (M8001_20230) | 4383868..4384512 | - | 645 | WP_010954686.1 | YmfQ family protein | - |
| M8001_RS20265 (M8001_20235) | 4384503..4385546 | - | 1044 | WP_010954687.1 | baseplate J/gp47 family protein | - |
| M8001_RS20270 (M8001_20240) | 4385536..4385922 | - | 387 | WP_010954688.1 | phage GP46 family protein | - |
| M8001_RS20275 (M8001_20245) | 4385919..4386419 | - | 501 | WP_010954689.1 | phage baseplate assembly protein V | - |
| M8001_RS20280 (M8001_20250) | 4386428..4387537 | - | 1110 | WP_010954690.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| M8001_RS20285 (M8001_20255) | 4387541..4388803 | - | 1263 | WP_010954691.1 | DNA circularization N-terminal domain-containing protein | - |
| M8001_RS20290 (M8001_20260) | 4388796..4390751 | - | 1956 | WP_010954692.1 | phage tail tape measure protein | - |
| M8001_RS20295 (M8001_20265) | 4390744..4390935 | - | 192 | WP_061405679.1 | hypothetical protein | - |
| M8001_RS20300 (M8001_20270) | 4390881..4391177 | - | 297 | WP_049587943.1 | phage tail assembly protein | - |
| M8001_RS20305 (M8001_20275) | 4391174..4391521 | - | 348 | WP_049587942.1 | phage tail tube protein | - |
| M8001_RS20310 (M8001_20280) | 4391604..4393025 | - | 1422 | WP_010951893.1 | group II intron reverse transcriptase/maturase | - |
| M8001_RS20315 (M8001_20285) | 4393495..4394982 | - | 1488 | WP_010954695.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| M8001_RS20320 (M8001_20290) | 4394982..4395185 | - | 204 | WP_010954696.1 | DUF2635 domain-containing protein | - |
| M8001_RS20325 (M8001_20295) | 4395191..4395784 | - | 594 | WP_049587778.1 | hypothetical protein | - |
| M8001_RS20330 (M8001_20300) | 4395814..4396329 | - | 516 | WP_010954699.1 | hypothetical protein | - |
| M8001_RS20335 (M8001_20305) | 4396322..4396696 | - | 375 | WP_010954700.1 | head-tail adaptor protein | - |
| M8001_RS20340 (M8001_20310) | 4396699..4397214 | - | 516 | WP_172835030.1 | hypothetical protein | - |
| M8001_RS20345 (M8001_20315) | 4397253..4397501 | - | 249 | WP_110771832.1 | hypothetical protein | - |
| M8001_RS20350 (M8001_20320) | 4397554..4398867 | - | 1314 | WP_049587776.1 | phage major capsid protein | - |
| M8001_RS20355 (M8001_20325) | 4398929..4399900 | - | 972 | WP_010954704.1 | S49 family peptidase | - |
| M8001_RS20360 (M8001_20330) | 4399897..4401168 | - | 1272 | WP_010954705.1 | phage portal protein | - |
| M8001_RS20365 (M8001_20335) | 4401171..4401359 | - | 189 | WP_010954706.1 | hypothetical protein | - |
| M8001_RS20370 (M8001_20340) | 4401356..4403164 | - | 1809 | WP_010954707.1 | terminase large subunit | - |
| M8001_RS20375 (M8001_20345) | 4403124..4403432 | - | 309 | WP_235436916.1 | phage terminase small subunit P27 family | - |
| M8001_RS20380 (M8001_20350) | 4403727..4404047 | - | 321 | WP_010954709.1 | HNH endonuclease | - |
| M8001_RS20385 (M8001_20355) | 4404051..4404374 | - | 324 | WP_010954710.1 | phage holin, lambda family | - |
| M8001_RS20390 (M8001_20360) | 4404533..4405162 | + | 630 | WP_061405680.1 | hypothetical protein | - |
| M8001_RS20395 (M8001_20365) | 4405311..4405571 | - | 261 | WP_010954712.1 | hypothetical protein | - |
| M8001_RS20400 (M8001_20370) | 4405555..4406226 | - | 672 | WP_010954713.1 | hypothetical protein | - |
| M8001_RS20405 (M8001_20375) | 4406239..4406520 | - | 282 | WP_235436917.1 | hypothetical protein | - |
| M8001_RS20410 (M8001_20380) | 4406556..4407854 | - | 1299 | WP_010954715.1 | hypothetical protein ; Integrase | Integrase |
| M8001_RS20415 (M8001_20385) | 4407851..4408279 | - | 429 | WP_049587773.1 | VRR-NUC domain-containing protein | - |
| M8001_RS20420 (M8001_20390) | 4408276..4408446 | - | 171 | WP_154070660.1 | hypothetical protein | - |
| M8001_RS20425 (M8001_20395) | 4408443..4408739 | - | 297 | WP_010954717.1 | DUF1364 domain-containing protein | - |
| M8001_RS20430 (M8001_20400) | 4408721..4408927 | - | 207 | WP_010954718.1 | hypothetical protein | - |
| M8001_RS20435 (M8001_20405) | 4408927..4410324 | - | 1398 | WP_010954719.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| M8001_RS20440 (M8001_20410) | 4410321..4411151 | - | 831 | WP_010954720.1 | replication protein | - |
| M8001_RS20445 (M8001_20415) | 4411476..4411688 | - | 213 | WP_010954721.1 | YdaS family helix-turn-helix protein | - |
| M8001_RS20450 (M8001_20420) | 4411776..4412423 | + | 648 | WP_010954722.1 | S24 family peptidase | - |
| M8001_RS20455 (M8001_20425) | 4412481..4412894 | + | 414 | WP_010954723.1 | HIRAN domain-containing protein | - |
| M8001_RS20460 (M8001_20430) | 4412938..4413174 | + | 237 | WP_010954724.1 | hypothetical protein | - |
| M8001_RS20465 (M8001_20435) | 4413341..4414333 | + | 993 | WP_049587768.1 | hypothetical protein | - |
| M8001_RS20470 (M8001_20440) | 4414336..4414902 | + | 567 | WP_049587766.1 | hypothetical protein | - |
| M8001_RS20475 (M8001_20445) | 4415070..4415411 | - | 342 | WP_049587764.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| M8001_RS20480 (M8001_20450) | 4415411..4415659 | - | 249 | WP_010954726.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| M8001_RS20485 (M8001_20455) | 4415809..4416069 | + | 261 | WP_010954727.1 | DUF1654 domain-containing protein | - |
| M8001_RS20490 (M8001_20460) | 4416441..4416650 | + | 210 | WP_049587762.1 | hypothetical protein | - |
| M8001_RS20495 (M8001_20465) | 4417287..4417670 | + | 384 | WP_049587761.1 | helix-turn-helix transcriptional regulator | - |
| M8001_RS20500 (M8001_20470) | 4417690..4417959 | + | 270 | WP_010954732.1 | hypothetical protein | - |
| M8001_RS20505 (M8001_20475) | 4417956..4418414 | + | 459 | WP_010954733.1 | hypothetical protein | - |
| M8001_RS20510 (M8001_20480) | 4418496..4418846 | + | 351 | WP_010954734.1 | hypothetical protein | - |
| M8001_RS20515 (M8001_20485) | 4418860..4419138 | - | 279 | WP_010954735.1 | hypothetical protein | - |
| M8001_RS20520 (M8001_20490) | 4419245..4419796 | + | 552 | WP_049587760.1 | hypothetical protein | - |
| M8001_RS20525 (M8001_20495) | 4419811..4420194 | + | 384 | WP_010954737.1 | hypothetical protein | - |
| M8001_RS20530 (M8001_20500) | 4420262..4421923 | + | 1662 | WP_010954738.1 | DNA cytosine methyltransferase | - |
| M8001_RS20535 (M8001_20505) | 4421932..4422609 | + | 678 | WP_049587756.1 | hypothetical protein | - |
| M8001_RS20540 (M8001_20510) | 4422659..4422958 | - | 300 | WP_049587754.1 | hypothetical protein | - |
| M8001_RS20545 (M8001_20515) | 4423124..4423507 | + | 384 | WP_010954740.1 | hypothetical protein | - |
| M8001_RS20550 (M8001_20520) | 4423504..4423782 | + | 279 | WP_049587751.1 | hypothetical protein | - |
| M8001_RS20555 (M8001_20525) | 4423779..4424102 | + | 324 | WP_010954741.1 | hypothetical protein | - |
| M8001_RS20560 (M8001_20530) | 4424099..4424491 | + | 393 | WP_010954742.1 | DUF2591 domain-containing protein | - |
| M8001_RS20565 (M8001_20535) | 4424681..4424953 | - | 273 | WP_049587750.1 | hypothetical protein | - |
| M8001_RS20570 (M8001_20540) | 4425774..4426091 | + | 318 | WP_049587747.1 | hypothetical protein | - |
| M8001_RS20575 (M8001_20545) | 4426131..4426376 | + | 246 | WP_010954745.1 | DUF4224 domain-containing protein | - |
| M8001_RS20580 (M8001_20550) | 4426378..4427427 | + | 1050 | WP_010954746.1 | hypothetical protein ; Integrase | Integrase |
| M8001_RS20590 (M8001_20560) | 4427757..4428776 | - | 1020 | WP_010954747.1 | protease SohB | - |
| M8001_RS20595 (M8001_20565) | 4428974..4429684 | + | 711 | WP_010954748.1 | histidine phosphatase family protein | - |
| M8001_RS20600 (M8001_20570) | 4429741..4430058 | + | 318 | WP_003251077.1 | SCP2 sterol-binding domain-containing protein | - |
| M8001_RS20605 (M8001_20575) | 4430242..4431309 | + | 1068 | WP_010954749.1 | phosphotransferase family protein | - |
| M8001_RS20610 (M8001_20580) | 4431346..4432113 | + | 768 | WP_003251082.1 | SDR family oxidoreductase | - |
| M8001_RS20615 (M8001_20585) | 4432114..4432935 | - | 822 | WP_003251085.1 | class I SAM-dependent methyltransferase | - |
| M8001_RS20620 (M8001_20590) | 4433105..4433455 | - | 351 | WP_012051882.1 | hypothetical protein | - |
| M8001_RS20625 (M8001_20595) | 4433573..4433863 | + | 291 | WP_010954750.1 | RcnB family protein | - |
| M8001_RS20630 (M8001_20600) | 4434107..4434292 | + | 186 | WP_004577263.1 | hypothetical protein | - |
| M8001_RS20635 (M8001_20605) | 4434366..4434758 | + | 393 | WP_010954752.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Pseudomonas putida KT2440 | Prophage | TA20007 | AE015451 | 4377646..4431298 | 0 | |
| Pseudomonas putida KT2440 | Prophage | TA20570 | NC_002947 | 4377646..4431298 | 0 |