MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP091540 Location: 847454..858779 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain S46L1 Replicon: chromosome
Accession: NZ_CP091540 Location: 847454..858779 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain S46L1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L5Z03_RS04060 (842900) | 842900..843998 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| L5Z03_RS04065 (844008) | 844008..845525 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| L5Z03_RS04070 (845601) | 845601..846146 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| L5Z03_RS04075 (846411) | 846411..847169 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| L5Z03_RS04085 (847454) | 847454..848260 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| L5Z03_RS04090 (848535) | 848535..848786 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| L5Z03_RS04095 (848963) | 848963..849190 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| L5Z03_RS04100 (849190) | 849190..849588 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| L5Z03_RS04105 (850394) | 850394..850930 | + | 537 | WP_001038506.1 | Cystathionine beta-lyase MetC | VF |
| L5Z03_RS04110 (850977) | 850977..851609 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| L5Z03_RS04115 (852328) | 852328..852912 | + | 585 | WP_001244638.1 | Biopolymer transport protein ExbD | VF |
| L5Z03_RS04120 (853032) | 853032..855521 | + | 2490 | WP_000705483.1 | putative oxidoreductase YghA | VF |
| L5Z03_RS04125 (855562) | 855562..856305 | + | 744 | WP_000798504.1 | hypothetical protein | VF |
| L5Z03_RS04130 (856302) | 856302..857378 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| L5Z03_RS04135 (857522) | 857522..858034 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| L5Z03_RS04140 (858021) | 858021..858779 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| L5Z03_RS04145 (858989) | 858989..859843 | - | 855 | WP_000503685.1 | nickel/cobalt efflux protein RcnA | - |
| L5Z03_RS04150 (859965) | 859965..860237 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| L5Z03_RS04155 (860268) | 860268..861497 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| L5Z03_RS04160 (861639) | 861639..862094 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| L5Z03_RS04165 (862198) | 862198..863061 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |