MGE detailed information
MGE type: Conjugative plasmid MGE length: 104427 bp
Accession: NZ_CP091299 Location: 1..104427 Organism: Salmonella enterica subsp. enterica serovar Bovismorbificans strain SB699 Replicon: plasmid pSCD1
Accession: NZ_CP091299 Location: 1..104427 Organism: Salmonella enterica subsp. enterica serovar Bovismorbificans strain SB699 Replicon: plasmid pSCD1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1971_RS00010 (L1971_00010) | 625..1065 | - | 441 | WP_237123633.1 | hypothetical protein | - |
| L1971_RS00015 (L1971_00015) | 1031..2866 | - | 1836 | WP_237123636.1 | P-loop NTPase fold protein | - |
| L1971_RS00020 (L1971_00020) | 2868..3956 | - | 1089 | WP_021003379.1 | transcriptional repressor PifC | - |
| L1971_RS00025 (L1971_00025) | 4194..4937 | - | 744 | WP_001292424.1 | hypothetical protein | - |
| L1971_RS00030 (L1971_00030) | 4969..5385 | - | 417 | WP_001697179.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| L1971_RS00035 (L1971_00035) | 5382..5612 | - | 231 | WP_001261289.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| L1971_RS00040 (L1971_00040) | 6356..6574 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| L1971_RS00045 (L1971_00045) | 6576..6881 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| L1971_RS00050 (L1971_00050) | 6883..7173 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| L1971_RS00055 (L1971_00055) | 7170..7691 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| L1971_RS00060 (L1971_00060) | 7726..8508 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| L1971_RS00065 (L1971_00065) | 8517..9230 | + | 714 | WP_237123644.1 | hypothetical protein | VF |
| L1971_RS00070 (L1971_00070) | 9255..9743 | + | 489 | WP_237123648.1 | CaiF/GrlA family transcriptional regulator | - |
| L1971_RS00075 (L1971_00075) | 9737..10222 | + | 486 | WP_000905606.1 | membrane protein | - |
| L1971_RS00080 (L1971_00080) | 10499..10786 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| L1971_RS00085 (L1971_00085) | 10942..11502 | + | 561 | WP_071991890.1 | hypothetical protein | VF |
| L1971_RS00090 (L1971_00090) | 11569..11919 | - | 351 | WP_001541541.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| L1971_RS00095 (L1971_00095) | 11976..12400 | + | 425 | Protein_18 | IS200-IS605 family transposase ISEc46 | Transposase |
| L1971_RS00100 (L1971_00100) | 12527..13177 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| L1971_RS00105 (L1971_00105) | 13438..14163 | - | 726 | WP_024798846.1 | hypothetical protein | VF |
| L1971_RS00110 (L1971_00110) | 14444..16219 | - | 1776 | WP_001676648.1 | hypothetical protein | VF |
| L1971_RS00115 (L1971_00115) | 16271..16438 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| L1971_RS00120 (L1971_00120) | 16401..17168 | - | 768 | WP_001676649.1 | virulence protein SpvA | - |
| L1971_RS00125 (L1971_00125) | 17342..17506 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| L1971_RS00130 (L1971_00130) | 17680..18573 | - | 894 | WP_000346689.1 | virulence genes transcriptional activator SpvR | - |
| L1971_RS00135 (L1971_00135) | 19181..20218 | + | 1038 | WP_024798847.1 | IS630 family transposase ISEc33 | Transposase |
| L1971_RS00140 (L1971_00140) | 20407..21432 | - | 1026 | WP_077914418.1 | ExeA family protein | - |
| L1971_RS00145 (L1971_00145) | 21365..23029 | - | 1665 | WP_000098783.1 | IS481 family transposase ISAzs36 | Transposase |
| L1971_RS00150 (L1971_00150) | 23013..23573 | - | 561 | WP_001240330.1 | Tn3 family transposase TnBth3 | Transposase |
| L1971_RS00155 (L1971_00155) | 23780..24520 | - | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| L1971_RS00160 (L1971_00160) | 25175..25663 | - | 489 | WP_001135409.1 | hypothetical protein | - |
| L1971_RS00165 (L1971_00165) | 25922..27037 | + | 1116 | WP_001247117.1 | DNA-binding protein | - |
| L1971_RS00170 (L1971_00170) | 27123..27539 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| L1971_RS00175 (L1971_00175) | 27642..28058 | + | 417 | WP_000988946.1 | hypothetical protein | - |
| L1971_RS00180 (L1971_00180) | 28115..28681 | + | 567 | WP_237123649.1 | DUF2913 family protein | - |
| L1971_RS00185 (L1971_00185) | 28713..29654 | - | 942 | WP_000728919.1 | hypothetical protein | VF |
| L1971_RS00190 (L1971_00190) | 30069..31274 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| L1971_RS00195 (L1971_00195) | 31274..32248 | + | 975 | WP_237123650.1 | ParB family protein | - |
| L1971_RS00200 (L1971_00200) | 32330..33604 | - | 1275 | WP_000457542.1 | Y-family DNA polymerase | - |
| L1971_RS00205 (L1971_00205) | 33604..34026 | - | 423 | WP_000925628.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| L1971_RS00210 (L1971_00210) | 34327..36048 | + | 1722 | Protein_41 | ParB/RepB/Spo0J family partition protein | - |
| L1971_RS00215 (L1971_00215) | 36088..36189 | + | 102 | Protein_42 | conjugation system SOS inhibitor PsiB family protein | - |
| L1971_RS00220 (L1971_00220) | 36190..36846 | + | 657 | Protein_43 | plasmid SOS inhibition protein A | - |
| L1971_RS23195 | 36881..37009 | + | 129 | WP_000372430.1 | hypothetical protein | - |
| L1971_RS00225 (L1971_00225) | 37095..37253 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| L1971_RS00230 (L1971_00230) | 37356..38174 | + | 819 | Protein_46 | DUF932 domain-containing protein | - |
| L1971_RS00235 (L1971_00235) | 38485..38955 | - | 471 | WP_015056628.1 | hypothetical protein | VF |
| L1971_RS00240 (L1971_00240) | 39370..39750 | + | 381 | WP_001151546.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| L1971_RS00245 (L1971_00245) | 39943..40629 | + | 687 | WP_000336296.1 | PAS domain-containing protein | - |
| L1971_RS00250 (L1971_00250) | 40723..40950 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| L1971_RS00255 (L1971_00255) | 40992..41354 | + | 363 | WP_001274198.1 | type IV conjugative transfer system pilin TraA | - |
| L1971_RS00260 (L1971_00260) | 41369..41680 | + | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| L1971_RS00265 (L1971_00265) | 41702..42268 | + | 567 | WP_000399761.1 | type IV conjugative transfer system protein TraE | - |
| L1971_RS00270 (L1971_00270) | 42255..42995 | + | 741 | WP_001230721.1 | type-F conjugative transfer system secretin TraK | - |
| L1971_RS00275 (L1971_00275) | 42995..44416 | + | 1422 | WP_000146702.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| L1971_RS00280 (L1971_00280) | 44406..45002 | + | 597 | WP_024799158.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| L1971_RS00285 (L1971_00285) | 44980..45204 | + | 225 | WP_077906918.1 | DUF2689 domain-containing protein | - |
| L1971_RS00290 (L1971_00290) | 45201..45716 | + | 516 | WP_001079997.1 | type IV conjugative transfer system lipoprotein TraV | - |
| L1971_RS00295 (L1971_00295) | 45851..46072 | + | 222 | WP_001278681.1 | conjugal transfer protein TraR | - |
| L1971_RS00300 (L1971_00300) | 46065..46532 | + | 468 | WP_000549560.1 | hypothetical protein | - |
| L1971_RS00305 (L1971_00305) | 46529..46912 | + | 384 | WP_000870324.1 | hypothetical protein | - |
| L1971_RS00310 (L1971_00310) | 46928..49576 | + | 2649 | WP_024798976.1 | type IV secretion system protein TraC | - |
| L1971_RS00315 (L1971_00315) | 49551..49937 | + | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| L1971_RS00320 (L1971_00320) | 49934..50566 | + | 633 | WP_000871997.1 | type-F conjugative transfer system protein TraW | - |
| L1971_RS00325 (L1971_00325) | 50563..51555 | + | 993 | WP_000833321.1 | conjugal transfer pilus assembly protein TraU | - |
| L1971_RS00330 (L1971_00330) | 51574..51870 | + | 297 | WP_077914412.1 | hypothetical protein | - |
| L1971_RS00335 (L1971_00335) | 51867..52496 | + | 630 | WP_000089759.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| L1971_RS00340 (L1971_00340) | 52517..52654 | - | 138 | WP_154071808.1 | hypothetical protein | - |
| L1971_RS00345 (L1971_00345) | 52856..54733 | + | 1878 | WP_237123561.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| L1971_RS00350 (L1971_00350) | 54744..55220 | + | 477 | WP_237123570.1 | hypothetical protein | - |
| L1971_RS00355 (L1971_00355) | 55230..55445 | + | 216 | WP_000783297.1 | conjugal transfer protein TrbE | - |
| L1971_RS00360 (L1971_00360) | 55457..56206 | + | 750 | WP_237123651.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| L1971_RS00365 (L1971_00365) | 56221..56565 | + | 345 | WP_001697170.1 | conjugal transfer protein TrbA | - |
| L1971_RS00370 (L1971_00370) | 56941..57234 | + | 294 | WP_001233880.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| L1971_RS00375 (L1971_00375) | 57221..57769 | + | 549 | WP_024798870.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| L1971_RS00380 (L1971_00380) | 57759..59141 | + | 1383 | WP_237123578.1 | conjugal transfer pilus assembly protein TraH | - |
| L1971_RS00385 (L1971_00385) | 59138..61957 | + | 2820 | WP_024798871.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| L1971_RS00390 (L1971_00390) | 61960..62271 | - | 312 | WP_000522257.1 | hypothetical protein | - |
| L1971_RS00395 (L1971_00395) | 62370..63101 | + | 732 | WP_000782437.1 | conjugal transfer complement resistance protein TraT | - |
| L1971_RS00400 (L1971_00400) | 63353..63832 | + | 480 | WP_025649166.1 | hypothetical protein | - |
| L1971_RS00405 (L1971_00405) | 64112..66337 | + | 2226 | WP_152280056.1 | type IV conjugative transfer system coupling protein TraD | - |
| L1971_RS00410 (L1971_00410) | 66346..66744 | - | 399 | WP_000911323.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| L1971_RS00415 (L1971_00415) | 66744..66971 | - | 228 | WP_000450263.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| L1971_RS00420 (L1971_00420) | 67053..72308 | + | 5256 | WP_024798951.1 | Multifunctional conjugation protein TraI | Relaxase |
| L1971_RS00425 (L1971_00425) | 72328..73068 | + | 741 | WP_000177631.1 | conjugal transfer pilus acetylase TraX | - |
| L1971_RS00430 (L1971_00430) | 73123..73686 | + | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| L1971_RS00435 (L1971_00435) | 73801..74082 | + | 282 | Protein_87 | disulfide bond formation protein DsbA | - |
| L1971_RS00440 (L1971_00440) | 74363..74929 | + | 567 | Protein_88 | phospholipase D family protein | - |
| L1971_RS00445 (L1971_00445) | 75040..75306 | + | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| L1971_RS00450 (L1971_00450) | 75556..75633 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| L1971_RS00455 (L1971_00455) | 75614..76495 | + | 882 | WP_001697166.1 | incFII family plasmid replication initiator RepA | - |
| L1971_RS00460 (L1971_00460) | 77382..77576 | + | 195 | Protein_92 | SdiA-regulated domain-containing protein | - |
| L1971_RS00465 (L1971_00465) | 77679..78308 | - | 630 | Protein_93 | AraC family transcriptional regulator | - |
| L1971_RS00470 (L1971_00470) | 78571..79128 | - | 558 | WP_000725063.1 | Attachment invasion locus protein | VF |
| L1971_RS00475 (L1971_00475) | 79218..80063 | - | 846 | WP_024798953.1 | YjiK family protein | - |
| L1971_RS00480 (L1971_00480) | 80265..80600 | - | 336 | WP_024798954.1 | Transcriptional regulatory protein RcsB | VF |
| L1971_RS00485 (L1971_00485) | 80585..80797 | - | 213 | WP_024798955.1 | hypothetical protein | VF |
| L1971_RS00490 (L1971_00490) | 80867..81527 | - | 661 | Protein_98 | DsbA family protein | - |
| L1971_RS00495 (L1971_00495) | 81827..82735 | - | 909 | WP_024799007.1 | hypothetical protein | - |
| L1971_RS00500 (L1971_00500) | 83347..83922 | - | 576 | Protein_100 | hypothetical protein | - |
| L1971_RS00505 (L1971_00505) | 83919..84611 | - | 693 | WP_001038511.1 | Chaperone protein FaeE | VF |
| L1971_RS00510 (L1971_00510) | 84604..87012 | - | 2409 | WP_024799006.1 | Outer membrane usher protein FimD | VF |
| L1971_RS00515 (L1971_00515) | 87240..87758 | - | 519 | WP_000748206.1 | hypothetical protein | VF |
| L1971_RS00520 (L1971_00520) | 88033..88335 | - | 303 | WP_000979451.1 | Major pilu subunit operon regulatory protein PapB | VF |
| L1971_RS00525 (L1971_00525) | 89041..89427 | + | 387 | WP_000751875.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| L1971_RS00530 (L1971_00530) | 89480..89599 | + | 120 | Protein_106 | recombinase | - |
| L1971_RS00535 (L1971_00535) | 89968..90957 | - | 990 | WP_000461383.1 | RepB family plasmid replication initiator protein | - |
| L1971_RS00540 (L1971_00540) | 91451..91747 | - | 297 | Protein_108 | cytoplasmic protein | - |
| L1971_RS00545 (L1971_00545) | 91759..92187 | + | 429 | Protein_109 | hypothetical protein | - |
| L1971_RS00550 (L1971_00550) | 92231..92752 | - | 522 | WP_077906922.1 | hypothetical protein | - |
| L1971_RS00555 (L1971_00555) | 93021..93311 | + | 291 | WP_000538309.1 | hypothetical protein | - |
| L1971_RS00560 (L1971_00560) | 93301..94200 | + | 900 | WP_000963205.1 | nucleotide-binding protein | - |
| L1971_RS00565 (L1971_00565) | 94324..95598 | - | 1275 | WP_237123587.1 | hypothetical protein | - |
| L1971_RS00570 (L1971_00570) | 95592..96566 | - | 975 | WP_237123596.1 | P-loop NTPase fold protein | - |
| L1971_RS00575 (L1971_00575) | 96568..97656 | - | 1089 | WP_237123653.1 | transcriptional repressor PifC | - |
| L1971_RS00580 (L1971_00580) | 97894..98637 | - | 744 | WP_001292424.1 | hypothetical protein | - |
| L1971_RS00585 (L1971_00585) | 98669..99085 | - | 417 | WP_001697179.1 | type II toxin-antitoxin system VapC family toxin | - |
| L1971_RS00590 (L1971_00590) | 99082..99311 | - | 230 | Protein_118 | type II toxin-antitoxin system VapB family antitoxin | - |
| L1971_RS00595 (L1971_00595) | 100057..100275 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| L1971_RS00600 (L1971_00600) | 100277..100569 | + | 293 | Protein_120 | type II toxin-antitoxin system toxin CcdB | - |
| L1971_RS00605 (L1971_00605) | 100582..100871 | + | 290 | Protein_121 | cytoplasmic protein | - |
| L1971_RS00610 (L1971_00610) | 100868..101389 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| L1971_RS00615 (L1971_00615) | 101424..102206 | + | 783 | Protein_123 | site-specific integrase | - |
| L1971_RS00620 (L1971_00620) | 102211..102387 | + | 177 | WP_237123604.1 | IS91 family transposase ISShvi3 | Transposase |
| L1971_RS00625 (L1971_00625) | 102484..102732 | + | 249 | WP_237123609.1 | hypothetical protein | - |
| L1971_RS00630 (L1971_00630) | 103007..103207 | + | 201 | WP_237123613.1 | hypothetical protein | - |
| L1971_RS00635 (L1971_00635) | 103441..103968 | + | 528 | Protein_127 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|