MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 25105 bp
Accession: NZ_CP090509 Location: 1..25105 Organism: Xylella fastidiosa subsp. morus strain Riv11 Replicon: plasmid pXF-Riv11
Accession: NZ_CP090509 Location: 1..25105 Organism: Xylella fastidiosa subsp. morus strain Riv11 Replicon: plasmid pXF-Riv11
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ758_RS11995 (LZ758_11995) | 130..1230 | + | 1101 | WP_013087942.1 | zeta toxin family protein | - |
| LZ758_RS12000 (LZ758_12000) | 1289..1552 | + | 264 | WP_013087943.1 | antitoxin | Antitoxin Detail |
| LZ758_RS12005 (LZ758_12005) | 1549..1875 | + | 327 | WP_038230332.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| LZ758_RS12010 (LZ758_12010) | 1934..3070 | - | 1137 | WP_013087945.1 | T-DNA border endonuclease VirD2 | Relaxase |
| LZ758_RS12015 (LZ758_12015) | 3136..4242 | - | 1107 | WP_013087946.1 | hypothetical protein | - |
| LZ758_RS12020 (LZ758_12020) | 4255..6531 | - | 2277 | WP_013087947.1 | Protein VirD4 | VF |
| LZ758_RS12025 (LZ758_12025) | 6528..7571 | - | 1044 | WP_013087948.1 | hypothetical protein | VF |
| LZ758_RS12030 (LZ758_12030) | 7549..8847 | - | 1299 | WP_013087949.1 | hypothetical protein | VF |
| LZ758_RS12035 (LZ758_12035) | 8850..9629 | - | 780 | WP_013087950.1 | hypothetical protein | VF |
| LZ758_RS12040 (LZ758_12040) | 9626..10336 | - | 711 | WP_013087951.1 | hypothetical protein | VF |
| LZ758_RS12045 (LZ758_12045) | 10340..11311 | - | 972 | WP_013087952.1 | type IV secretion system protein | - |
| LZ758_RS12050 (LZ758_12050) | 11315..11542 | - | 228 | WP_234056442.1 | hypothetical protein | - |
| LZ758_RS12055 (LZ758_12055) | 11681..11908 | - | 228 | WP_234056443.1 | hypothetical protein | - |
| LZ758_RS12060 (LZ758_12060) | 12679..13344 | - | 666 | WP_013087957.1 | Type IV secretion system protein virB5 | VF |
| LZ758_RS12065 (LZ758_12065) | 13347..15761 | - | 2415 | WP_038230323.1 | Type IV secretion system protein virB4 | VF |
| LZ758_RS12070 (LZ758_12070) | 15724..16107 | - | 384 | WP_013087959.1 | VirB3 family type IV secretion system protein | - |
| LZ758_RS12075 (LZ758_12075) | 16112..16432 | - | 321 | WP_013087960.1 | TrbC/VirB2 family protein | - |
| LZ758_RS12080 (LZ758_12080) | 16435..16914 | - | 480 | WP_080679721.1 | hypothetical protein | - |
| LZ758_RS12085 (LZ758_12085) | 16917..17096 | - | 180 | WP_014607310.1 | hypothetical protein | - |
| LZ758_RS12090 (LZ758_12090) | 17922..18281 | + | 360 | WP_038211603.1 | hypothetical protein | - |
| LZ758_RS12095 (LZ758_12095) | 18375..19046 | - | 672 | WP_013087963.1 | restriction endonuclease | - |
| LZ758_RS12100 (LZ758_12100) | 19071..19199 | + | 129 | WP_234056444.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| LZ758_RS12105 (LZ758_12105) | 19251..19520 | - | 270 | WP_014607314.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LZ758_RS12110 (LZ758_12110) | 19504..19734 | - | 231 | WP_038211605.1 | DUF6290 family protein | Antitoxin Detail |
| LZ758_RS12115 (LZ758_12115) | 19911..20513 | + | 603 | WP_013087965.1 | Tn3 family transposase TnBth3 | Transposase |
| LZ758_RS12120 (LZ758_12120) | 20510..21376 | + | 867 | WP_128723949.1 | plasmid replication initiator TrfA | - |
| LZ758_RS12125 (LZ758_12125) | 21820..22056 | + | 237 | WP_013087968.1 | antitoxin MazE family protein | - |
| LZ758_RS12130 (LZ758_12130) | 22053..22380 | + | 328 | Protein_28 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| LZ758_RS12135 (LZ758_12135) | 22485..22928 | - | 444 | WP_014607318.1 | hypothetical protein | - |
| LZ758_RS12140 (LZ758_12140) | 22929..23681 | - | 753 | WP_013087971.1 | hypothetical protein | - |
| LZ758_RS12145 (LZ758_12145) | 23694..23954 | - | 261 | WP_234056440.1 | hypothetical protein | - |
| LZ758_RS12150 (LZ758_12150) | 24327..24956 | + | 630 | WP_234056441.1 | hypothetical protein | Relaxase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Xylella fastidiosa | Non-Mobilizable plasmid | TA6120, TA24732 | NC_014111 | 1..25105 | 0 |