MGE detailed information
MGE type: Mobilizable plasmid MGE length: 63625 bp
Accession: NZ_CP090405 Location: 1..63625 Organism: Shigella sp. PIB Replicon: plasmid pPIB-3
Accession: NZ_CP090405 Location: 1..63625 Organism: Shigella sp. PIB Replicon: plasmid pPIB-3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LXH19_RS23430 (LXH19_23425) | 694..1226 | - | 533 | Protein_1 | thermonuclease family protein | - |
| LXH19_RS23435 (LXH19_23430) | 1256..1909 | - | 654 | WP_170852113.1 | hypothetical protein | - |
| LXH19_RS23440 (LXH19_23435) | 1921..3045 | - | 1125 | WP_000486716.1 | site-specific integrase | - |
| LXH19_RS23445 (LXH19_23440) | 3368..3523 | - | 156 | WP_001358489.1 | hypothetical protein | - |
| LXH19_RS24155 | 3562..3693 | - | 132 | WP_256477824.1 | hypothetical protein | - |
| LXH19_RS23450 (LXH19_23445) | 4736..5779 | - | 1044 | Protein_6 | hypothetical protein | VF |
| LXH19_RS23455 (LXH19_23450) | 5792..6427 | - | 636 | WP_000934977.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| LXH19_RS23460 (LXH19_23455) | 6431..6913 | - | 483 | WP_001258095.1 | hypothetical protein | VF |
| LXH19_RS23465 (LXH19_23460) | 6979..7536 | - | 558 | WP_000095048.1 | type 4 pilus major pilin | - |
| LXH19_RS23470 (LXH19_23465) | 7581..8690 | - | 1110 | WP_000974903.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| LXH19_RS23475 (LXH19_23470) | 8681..10219 | - | 1539 | WP_000466225.1 | Type II secretion system protein E | VF |
| LXH19_RS23480 (LXH19_23475) | 10244..10738 | - | 495 | WP_000912553.1 | hypothetical protein | VF |
| LXH19_RS23485 (LXH19_23480) | 10722..12044 | - | 1323 | WP_000454142.1 | type 4b pilus protein PilO2 | - |
| LXH19_RS23490 (LXH19_23485) | 12083..13726 | - | 1644 | WP_001035592.1 | Outer membrane lipoprotein BfpB | VF |
| LXH19_RS23495 (LXH19_23490) | 13719..14255 | - | 537 | WP_001220543.1 | sigma 54-interacting transcriptional regulator | - |
| LXH19_RS23500 (LXH19_23495) | 14302..16260 | - | 1959 | WP_015059539.1 | type IV secretory system conjugative DNA transfer family protein | - |
| LXH19_RS23505 (LXH19_23500) | 16276..17331 | - | 1056 | WP_001059977.1 | Type IV secretion system protein VirB11 | VF |
| LXH19_RS23510 (LXH19_23505) | 17350..18489 | - | 1140 | WP_000790640.1 | Type IV secretion system protein virB10 | VF |
| LXH19_RS23515 (LXH19_23510) | 18479..19249 | - | 771 | WP_000979242.1 | Type IV secretion system protein PtlF | VF |
| LXH19_RS23520 (LXH19_23515) | 19246..19980 | - | 735 | WP_000432282.1 | Type IV secretion system protein virB8 | VF |
| LXH19_RS23525 (LXH19_23520) | 20146..22503 | - | 2358 | WP_000548955.1 | VirB4 family type IV secretion system protein | - |
| LXH19_RS23530 (LXH19_23525) | 22509..22829 | - | 321 | WP_000362080.1 | VirB3 family type IV secretion system protein | - |
| LXH19_RS23535 (LXH19_23530) | 22900..23190 | - | 291 | WP_000865479.1 | conjugal transfer protein | - |
| LXH19_RS23540 (LXH19_23535) | 23190..23774 | - | 585 | WP_001177113.1 | Type IV secretion system protein virB1 | VF |
| LXH19_RS23545 (LXH19_23540) | 23795..24193 | - | 399 | WP_001153665.1 | hypothetical protein | - |
| LXH19_RS23550 (LXH19_23545) | 24312..24749 | - | 438 | WP_000539665.1 | type IV pilus biogenesis protein PilM | - |
| LXH19_RS23555 (LXH19_23550) | 24755..25990 | - | 1236 | WP_015059538.1 | hypothetical protein | VF |
| LXH19_RS23560 (LXH19_23555) | 25993..26292 | - | 300 | WP_000835764.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| LXH19_RS23565 (LXH19_23560) | 26360..26641 | - | 282 | WP_000638823.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LXH19_RS23570 (LXH19_23565) | 26631..26882 | - | 252 | WP_000121741.1 | hypothetical protein | Antitoxin Detail |
| LXH19_RS23575 (LXH19_23570) | 26982..27617 | - | 636 | WP_015059536.1 | hypothetical protein | - |
| LXH19_RS23580 (LXH19_23575) | 27665..28456 | + | 792 | WP_023154636.1 | DUF5710 domain-containing protein | - |
| LXH19_RS23585 (LXH19_23580) | 28711..28935 | - | 225 | WP_000713561.1 | EexN family lipoprotein | - |
| LXH19_RS23590 (LXH19_23585) | 28944..29588 | - | 645 | WP_001310442.1 | hypothetical protein | VF |
| LXH19_RS23595 (LXH19_23590) | 29594..30589 | - | 996 | WP_001028541.1 | hypothetical protein | VF |
| LXH19_RS23600 (LXH19_23595) | 30593..30850 | - | 258 | WP_000739144.1 | hypothetical protein | - |
| LXH19_RS23605 (LXH19_23600) | 30847..31149 | - | 303 | WP_001360345.1 | hypothetical protein | - |
| LXH19_RS23610 (LXH19_23605) | 31420..31632 | - | 213 | WP_039022940.1 | hypothetical protein | - |
| LXH19_RS23615 (LXH19_23610) | 31643..31813 | - | 171 | WP_000550720.1 | hypothetical protein | - |
| LXH19_RS23620 (LXH19_23615) | 31817..32260 | - | 444 | WP_072037179.1 | NfeD family protein | - |
| LXH19_RS23625 (LXH19_23620) | 32634..33587 | - | 954 | WP_072109880.1 | SPFH domain-containing protein | - |
| LXH19_RS23630 (LXH19_23625) | 33614..33790 | - | 177 | WP_000753050.1 | hypothetical protein | - |
| LXH19_RS23635 (LXH19_23630) | 33783..33998 | - | 216 | WP_001127357.1 | DUF1187 family protein | - |
| LXH19_RS23640 (LXH19_23635) | 33991..34443 | - | 453 | WP_223666486.1 | CaiF/GrlA family transcriptional regulator | - |
| LXH19_RS23645 (LXH19_23640) | 35583..36611 | + | 1029 | WP_001175213.1 | plasmid replication initiator RepA | - |
| LXH19_RS23650 (LXH19_23645) | 37312..37502 | + | 191 | Protein_46 | hypothetical protein | - |
| LXH19_RS23655 (LXH19_23650) | 37617..38021 | - | 405 | WP_001175008.1 | IS200-IS605 family transposase ISSen6 | Transposase |
| LXH19_RS23660 (LXH19_23655) | 38080..39306 | + | 1227 | WP_001672025.1 | IS200-IS605 family transposase ISSen6 | Transposase |
| LXH19_RS23665 (LXH19_23660) | 39970..40122 | + | 153 | Protein_49 | FlmC family protein | - |
| LXH19_RS23670 (LXH19_23665) | 40070..40189 | + | 120 | WP_228932012.1 | Hok/Gef family protein | - |
| LXH19_RS23675 (LXH19_23670) | 40339..40935 | + | 597 | WP_000125165.1 | ProQ/FINO family protein | - |
| LXH19_RS23680 (LXH19_23675) | 40953..41237 | - | 285 | WP_001162371.1 | hypothetical protein | - |
| LXH19_RS23685 (LXH19_23680) | 41316..41981 | - | 666 | WP_000532148.1 | division plane positioning ATPase MipZ | - |
| LXH19_RS23690 (LXH19_23685) | 42571..42900 | + | 330 | WP_001542022.1 | hypothetical protein | - |
| LXH19_RS23695 (LXH19_23690) | 43301..43816 | + | 516 | WP_001025393.1 | J domain-containing protein | - |
| LXH19_RS23700 (LXH19_23695) | 43920..44462 | + | 543 | WP_001083904.1 | hypothetical protein | - |
| LXH19_RS23705 (LXH19_23700) | 44459..44713 | + | 255 | WP_001230709.1 | hypothetical protein | Toxin Detail |
| LXH19_RS23710 (LXH19_23705) | 44710..44952 | + | 243 | WP_000151456.1 | hypothetical protein | Antitoxin Detail |
| LXH19_RS23715 (LXH19_23710) | 45173..45391 | + | 219 | WP_154101533.1 | hypothetical protein | - |
| LXH19_RS23720 (LXH19_23715) | 45523..45816 | + | 294 | WP_000673428.1 | hypothetical protein | - |
| LXH19_RS23725 (LXH19_23720) | 46310..46558 | + | 249 | WP_000513532.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| LXH19_RS23730 (LXH19_23725) | 46555..46902 | + | 348 | WP_000681609.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| LXH19_RS23735 (LXH19_23730) | 46990..47433 | - | 444 | WP_023223351.1 | hypothetical protein | - |
| LXH19_RS23740 (LXH19_23735) | 47674..47973 | + | 300 | WP_034169410.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| LXH19_RS23745 (LXH19_23740) | 48233..48559 | - | 327 | WP_000206697.1 | hypothetical protein | - |
| LXH19_RS23750 (LXH19_23745) | 48561..48899 | - | 339 | WP_029797038.1 | hypothetical protein | - |
| LXH19_RS23755 (LXH19_23750) | 48879..49001 | - | 123 | Protein_67 | hypothetical protein | - |
| LXH19_RS23760 (LXH19_23755) | 49021..49728 | - | 708 | WP_000108794.1 | hypothetical protein | - |
| LXH19_RS23765 (LXH19_23760) | 49730..50482 | - | 753 | WP_000797966.1 | conjugal transfer protein TraL | - |
| LXH19_RS23770 (LXH19_23765) | 50500..50901 | - | 402 | WP_021575837.1 | hypothetical protein | - |
| LXH19_RS23775 (LXH19_23770) | 51270..51611 | + | 342 | WP_000730722.1 | hypothetical protein | Relaxase |
| LXH19_RS23780 (LXH19_23775) | 51608..55921 | + | 4314 | WP_034169409.1 | hypothetical protein | - |
| LXH19_RS23785 (LXH19_23780) | 56142..57767 | + | 1626 | WP_049589868.1 | putative phosphatidylethanolamine transferase Mcr-1 | VF |
| LXH19_RS23790 (LXH19_23785) | 57839..58612 | + | 774 | WP_052234578.1 | PAP2 family protein | - |
| LXH19_RS23795 (LXH19_23790) | 58571..59011 | - | 441 | WP_000666084.1 | hypothetical protein | - |
| LXH19_RS23800 (LXH19_23795) | 59357..59563 | - | 207 | WP_000850854.1 | hemolysin expression modulator Hha | - |
| LXH19_RS23805 (LXH19_23800) | 59632..61797 | - | 2166 | WP_063078686.1 | type IA DNA topoisomerase | - |
| LXH19_RS23810 (LXH19_23805) | 61802..62377 | - | 576 | WP_001303470.1 | hypothetical protein | - |
| LXH19_RS23815 (LXH19_23810) | 62547..63623 | - | 1077 | WP_233707891.1 | PcfJ domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|