MGE detailed information
MGE type: Conjugative plasmid MGE length: 98997 bp
Accession: NZ_CP090403 Location: 1..98997 Organism: Shigella sp. PIB Replicon: plasmid pPIB-1
Accession: NZ_CP090403 Location: 1..98997 Organism: Shigella sp. PIB Replicon: plasmid pPIB-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LXH19_RS22365 (604) | 604..1758 | + | 1155 | WP_001139958.1 | site-specific integrase | - |
| LXH19_RS22370 (1909) | 1909..2733 | + | 825 | WP_001238927.1 | conjugal transfer protein TraE | - |
| LXH19_RS22375 (2819) | 2819..4021 | + | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| LXH19_RS22380 (4081) | 4081..4665 | + | 585 | WP_000977517.1 | histidine phosphatase family protein | - |
| LXH19_RS22385 (5060) | 5060..5518 | + | 459 | WP_001079808.1 | IncI1-type conjugal transfer lipoprotein TraH | - |
| LXH19_RS22390 (5515) | 5515..6333 | + | 819 | WP_000646097.1 | IncI1-type conjugal transfer lipoprotein TraI | - |
| LXH19_RS22395 (6330) | 6330..7478 | + | 1149 | WP_001024972.1 | plasmid transfer ATPase TraJ | - |
| LXH19_RS22400 (7475) | 7475..7765 | + | 291 | WP_001299214.1 | hypothetical protein | - |
| LXH19_RS22405 (7780) | 7780..8331 | + | 552 | WP_000014584.1 | phospholipase D family protein | - |
| LXH19_RS22410 (8421) | 8421..12188 | + | 3768 | WP_001141535.1 | DUF5710 domain-containing protein | - |
| LXH19_RS22415 (12206) | 12206..12553 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| LXH19_RS22420 (12550) | 12550..13242 | + | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| LXH19_RS22425 (13253) | 13253..14236 | + | 984 | WP_001191878.1 | IncI1-type conjugal transfer protein TraN | - |
| LXH19_RS22430 (14239) | 14239..15528 | + | 1290 | WP_001271997.1 | conjugal transfer protein TraO | - |
| LXH19_RS22435 (15528) | 15528..16232 | + | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| LXH19_RS22440 (16232) | 16232..16759 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| LXH19_RS22445 (16810) | 16810..17214 | + | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| LXH19_RS22450 (17278) | 17278..17466 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| LXH19_RS22455 (17450) | 17450..18250 | + | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| LXH19_RS22460 (18340) | 18340..21384 | + | 3045 | WP_001024751.1 | IncI1-type conjugal transfer protein TraU | - |
| LXH19_RS22465 (21384) | 21384..21998 | + | 615 | WP_000337394.1 | IncI1-type conjugal transfer protein TraV | - |
| LXH19_RS22470 (21965) | 21965..23167 | + | 1203 | WP_001189158.1 | IncI1-type conjugal transfer protein TraW | - |
| LXH19_RS22475 (23196) | 23196..23780 | + | 585 | WP_001037998.1 | conjugal transfer protein TraX | - |
| LXH19_RS22480 (23877) | 23877..26045 | + | 2169 | WP_000698368.1 | DotA/TraY family protein | - |
| LXH19_RS22485 (26116) | 26116..26778 | + | 663 | WP_000644794.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| LXH19_RS22490 (26850) | 26850..27059 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| LXH19_RS22495 (27450) | 27450..27626 | + | 177 | WP_001054900.1 | hypothetical protein | - |
| - (28112) | 28112..28163 | + | 52 | NuclAT_1 | - | - |
| - (28112) | 28112..28163 | + | 52 | NuclAT_1 | - | - |
| - (28112) | 28112..28163 | + | 52 | NuclAT_1 | - | - |
| - (28112) | 28112..28163 | + | 52 | NuclAT_1 | - | - |
| LXH19_RS22500 (28347) | 28347..29369 | + | 1023 | WP_001572805.1 | IS21-like element IS100 family transposase | - |
| LXH19_RS22505 (29366) | 29366..30148 | + | 783 | WP_001300609.1 | IS21-like element IS100kyp family helper ATPase IstB | - |
| LXH19_RS22510 (30509) | 30509..30760 | + | 252 | WP_001291965.1 | hypothetical protein | - |
| LXH19_RS22515 (30832) | 30832..30984 | - | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| - (31034) | 31034..31096 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (31034) | 31034..31096 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (31034) | 31034..31096 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (31034) | 31034..31096 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| LXH19_RS22520 (31276) | 31276..32484 | + | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| LXH19_RS22525 (32503) | 32503..33573 | + | 1071 | WP_000151575.1 | IncI1-type conjugal transfer protein TrbB | - |
| LXH19_RS22530 (33566) | 33566..35857 | + | 2292 | WP_001289271.1 | F-type conjugative transfer protein TrbC | - |
| LXH19_RS22535 (35894) | 35894..38593 | - | 2700 | WP_001474686.1 | IncI1-type relaxase NikB | - |
| LXH19_RS22540 (38604) | 38604..38936 | - | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| LXH19_RS22545 (39170) | 39170..39505 | + | 336 | WP_000157086.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| LXH19_RS22550 (39591) | 39591..40439 | - | 849 | WP_001077027.1 | DUF4942 domain-containing protein | - |
| LXH19_RS22555 (41020) | 41020..41271 | + | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| LXH19_RS22560 (41302) | 41302..41583 | - | 282 | WP_001334682.1 | hypothetical protein | - |
| LXH19_RS22565 (41583) | 41583..42485 | - | 903 | WP_000038404.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| LXH19_RS22570 (42550) | 42550..42816 | - | 267 | WP_001247862.1 | hypothetical protein | - |
| LXH19_RS22575 (42910) | 42910..43344 | - | 435 | WP_000218863.1 | hypothetical protein | - |
| LXH19_RS22580 (44073) | 44073..44573 | - | 501 | WP_252321958.1 | antirestriction protein ArdA | - |
| LXH19_RS22585 (45020) | 45020..46195 | - | 1176 | WP_000942657.1 | RNA-guided endonuclease TnpB family protein | - |
| LXH19_RS22590 (46325) | 46325..47044 | - | 720 | WP_001276260.1 | plasmid SOS inhibition protein A | - |
| LXH19_RS22595 (47041) | 47041..47474 | - | 434 | Protein_46 | conjugation system SOS inhibitor PsiB | - |
| LXH19_RS22600 (47529) | 47529..49487 | - | 1959 | WP_001145458.1 | ParB/RepB/Spo0J family partition protein | - |
| LXH19_RS22605 (49546) | 49546..49779 | - | 234 | WP_000006012.1 | DUF905 family protein | - |
| LXH19_RS22610 (49837) | 49837..50364 | - | 528 | WP_001276116.1 | single-stranded DNA-binding protein | - |
| LXH19_RS22615 (50716) | 50716..51063 | - | 348 | WP_001303314.1 | hypothetical protein | - |
| LXH19_RS22620 (51134) | 51134..51325 | - | 192 | WP_001027500.1 | hypothetical protein | - |
| LXH19_RS22625 (51322) | 51322..51744 | - | 423 | WP_000271725.1 | DUF1380 family protein | - |
| LXH19_RS22630 (51791) | 51791..52216 | - | 426 | WP_001198928.1 | antirestriction protein | - |
| LXH19_RS22635 (52634) | 52634..53404 | - | 771 | WP_024133193.1 | hypothetical protein | - |
| LXH19_RS22640 (53455) | 53455..53941 | - | 487 | Protein_55 | DUF1380 domain-containing protein | - |
| LXH19_RS22645 (53901) | 53901..54122 | - | 222 | WP_001104887.1 | hypothetical protein | - |
| LXH19_RS22650 (54123) | 54123..54806 | - | 684 | WP_000086178.1 | DNA methylase | - |
| LXH19_RS22655 (54883) | 54883..55194 | - | 312 | WP_010891263.1 | hypothetical protein | - |
| LXH19_RS22660 (55191) | 55191..56093 | - | 903 | WP_000273918.1 | DUF1281 domain-containing protein | - |
| LXH19_RS22665 (56511) | 56511..56759 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| LXH19_RS22670 (56756) | 56756..57193 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LXH19_RS22675 (57193) | 57193..58467 | + | 1275 | WP_000457493.1 | Y-family DNA polymerase | - |
| LXH19_RS22680 (58469) | 58469..58885 | - | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| LXH19_RS22685 (58878) | 58878..59858 | - | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| LXH19_RS22690 (60272) | 60272..60580 | - | 309 | WP_000030199.1 | hypothetical protein | - |
| LXH19_RS22695 (60667) | 60667..61311 | - | 645 | WP_001144036.1 | ParA family protein | - |
| LXH19_RS22700 (61491) | 61491..62297 | - | 807 | WP_000016969.1 | site-specific integrase | - |
| LXH19_RS22705 (62298) | 62298..62603 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| LXH19_RS22710 (62605) | 62605..62823 | - | 219 | WP_000813630.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| LXH19_RS22715 (63381) | 63381..64307 | + | 927 | WP_001290416.1 | hypothetical protein | - |
| LXH19_RS22720 (64352) | 64352..64606 | + | 255 | WP_000678527.1 | hypothetical protein | - |
| LXH19_RS22725 (65105) | 65105..65449 | + | 345 | WP_000793307.1 | hypothetical protein | - |
| LXH19_RS22730 (65625) | 65625..66626 | - | 1002 | WP_000774875.1 | DUF4238 domain-containing protein | - |
| LXH19_RS22735 (66978) | 66978..67232 | + | 255 | WP_000343103.1 | hypothetical protein | - |
| LXH19_RS22740 (67232) | 67232..67822 | + | 591 | WP_000194550.1 | hypothetical protein | - |
| LXH19_RS22745 (67840) | 67840..68187 | - | 348 | WP_000142436.1 | DUF6404 family protein | - |
| LXH19_RS22750 (68306) | 68306..68653 | + | 348 | WP_000762570.1 | colicin 1B immunity protein | - |
| LXH19_RS22755 (68671) | 68671..70551 | - | 1881 | WP_001283341.1 | colicin Ia central receptor-binding domain-containing protein | - |
| LXH19_RS22760 (70830) | 70830..71300 | - | 471 | Protein_79 | hypothetical protein | - |
| LXH19_RS22765 (71352) | 71352..71669 | + | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| LXH19_RS22770 (71666) | 71666..72199 | - | 534 | WP_001221666.1 | lipocalin family protein | - |
| LXH19_RS22775 (72293) | 72293..73438 | - | 1146 | WP_000976514.1 | class C beta-lactamase CMY-2 | - |
| LXH19_RS22780 (73762) | 73762..75024 | - | 1263 | WP_000608644.1 | IS1380-like element ISEcp1 family transposase | - |
| LXH19_RS22785 (75207) | 75207..76091 | - | 885 | Protein_84 | hypothetical protein | - |
| LXH19_RS22790 (76445) | 76445..77047 | + | 603 | WP_000517695.1 | ProQ/FINO family protein | - |
| LXH19_RS22795 (77103) | 77103..77597 | + | 495 | WP_001459505.1 | hypothetical protein | - |
| LXH19_RS22800 (77597) | 77597..77863 | + | 267 | WP_000955263.1 | hypothetical protein | - |
| LXH19_RS22805 (78340) | 78340..78813 | - | 474 | WP_001334658.1 | hypothetical protein | - |
| LXH19_RS22810 (78930) | 78930..79778 | - | 849 | WP_001057992.1 | 3'-5' exonuclease | - |
| LXH19_RS22815 (79818) | 79818..80096 | - | 279 | WP_244442846.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| LXH19_RS22820 (80096) | 80096..80365 | - | 270 | WP_000079941.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| LXH19_RS22825 (80420) | 80420..80578 | - | 159 | WP_000841008.1 | hypothetical protein | - |
| LXH19_RS22830 (81274) | 81274..82305 | - | 1032 | WP_000907873.1 | plasmid replication initiator RepA | - |
| LXH19_RS22835 (83311) | 83311..83541 | + | 231 | WP_228772074.1 | ash family protein | - |
| LXH19_RS22840 (83459) | 83459..83746 | + | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| LXH19_RS22845 (84188) | 84188..84721 | + | 534 | WP_001303319.1 | transcription termination/antitermination NusG family protein | - |
| LXH19_RS22850 (84975) | 84975..85658 | + | 684 | WP_000213857.1 | conjugal transfer protein TraC | - |
| LXH19_RS22855 (85672) | 85672..86238 | + | 567 | WP_000776428.1 | protein TraD | - |
| LXH19_RS22860 (86506) | 86506..86760 | + | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| LXH19_RS22865 (86803) | 86803..87255 | + | 453 | WP_000008892.1 | hypothetical protein | - |
| LXH19_RS22870 (87929) | 87929..88995 | + | 1067 | Protein_101 | type IV pilus biogenesis lipoprotein PilL | - |
| LXH19_RS22875 (88995) | 88995..89432 | + | 438 | WP_000539807.1 | type IV pilus biogenesis protein PilM | - |
| LXH19_RS22880 (89446) | 89446..91128 | + | 1683 | WP_000748143.1 | PilN family type IVB pilus formation outer membrane protein | - |
| LXH19_RS22885 (91121) | 91121..92416 | + | 1296 | WP_000752774.1 | type 4b pilus protein PilO2 | - |
| LXH19_RS22890 (92403) | 92403..92855 | + | 453 | WP_001247336.1 | type IV pilus biogenesis protein PilP | - |
| LXH19_RS22895 (92866) | 92866..94419 | + | 1554 | WP_000362202.1 | ATPase, T2SS/T4P/T4SS family | - |
| LXH19_RS22900 (94432) | 94432..95529 | + | 1098 | WP_001208805.1 | type II secretion system F family protein | - |
| LXH19_RS22905 (95547) | 95547..96161 | + | 615 | WP_000959785.1 | type 4 pilus major pilin | - |
| LXH19_RS22910 (96171) | 96171..96731 | + | 561 | WP_000014116.1 | lytic transglycosylase domain-containing protein | - |
| LXH19_RS22915 (96716) | 96716..97372 | + | 657 | WP_001193553.1 | prepilin peptidase | - |
| LXH19_RS22920 (97372) | 97372..98664 | + | 1293 | WP_032274560.1 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| LXH19_RS22925 (98661) | 98661..98909 | - | 249 | WP_001349157.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|