MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 25102 bp
Accession: NZ_CP090317 Location: 1..25102 Organism: Xylella fastidiosa subsp. morus strain Riv16 Replicon: plasmid pXF-Riv16
Accession: NZ_CP090317 Location: 1..25102 Organism: Xylella fastidiosa subsp. morus strain Riv16 Replicon: plasmid pXF-Riv16
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUD23_RS11980 (IUD23_11980) | 130..1230 | + | 1101 | WP_013087942.1 | zeta toxin family protein | - |
| IUD23_RS11985 (IUD23_11985) | 1289..1552 | + | 264 | WP_013087943.1 | antitoxin | Antitoxin Detail |
| IUD23_RS11990 (IUD23_11990) | 1549..1875 | + | 327 | WP_038230332.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| IUD23_RS11995 (IUD23_11995) | 1934..3070 | - | 1137 | WP_013087945.1 | T-DNA border endonuclease VirD2 | Relaxase |
| IUD23_RS12000 (IUD23_12000) | 3136..4242 | - | 1107 | WP_013087946.1 | hypothetical protein | - |
| IUD23_RS12005 (IUD23_12005) | 4255..6531 | - | 2277 | WP_013087947.1 | Protein VirD4 | VF |
| IUD23_RS12010 (IUD23_12010) | 6528..7571 | - | 1044 | WP_013087948.1 | Type IV secretion system protein VirB11 | VF |
| IUD23_RS12015 (IUD23_12015) | 7549..8847 | - | 1299 | WP_013087949.1 | Type IV secretion system protein virB10 | VF |
| IUD23_RS12020 (IUD23_12020) | 8850..9629 | - | 780 | WP_013087950.1 | Type IV secretion system protein virB9 | VF |
| IUD23_RS12025 (IUD23_12025) | 9626..10336 | - | 711 | WP_013087951.1 | Type IV secretion system protein PtlE | VF |
| IUD23_RS12030 (IUD23_12030) | 10340..11311 | - | 972 | WP_013087952.1 | type IV secretion system protein | - |
| IUD23_RS12035 (IUD23_12035) | 11315..11542 | - | 228 | WP_234056442.1 | hypothetical protein | - |
| IUD23_RS12040 (IUD23_12040) | 11681..11908 | - | 228 | WP_234056443.1 | hypothetical protein | - |
| IUD23_RS12045 (IUD23_12045) | 12679..13344 | - | 666 | WP_013087957.1 | Type IV secretion system protein virB5 | VF |
| IUD23_RS12050 (IUD23_12050) | 13347..15761 | - | 2415 | WP_038230323.1 | Type IV secretion system protein virB4 | VF |
| IUD23_RS12055 (IUD23_12055) | 15724..16107 | - | 384 | WP_013087959.1 | VirB3 family type IV secretion system protein | - |
| IUD23_RS12060 (IUD23_12060) | 16112..16432 | - | 321 | WP_013087960.1 | TrbC/VirB2 family protein | - |
| IUD23_RS12065 (IUD23_12065) | 16435..16908 | - | 474 | WP_013087961.1 | hypothetical protein | - |
| IUD23_RS12070 (IUD23_12070) | 16917..17096 | - | 180 | WP_014607310.1 | hypothetical protein | - |
| IUD23_RS12075 (IUD23_12075) | 17922..18281 | + | 360 | WP_038211603.1 | hypothetical protein | - |
| IUD23_RS12080 (IUD23_12080) | 18375..19046 | - | 672 | WP_013087963.1 | restriction endonuclease | - |
| IUD23_RS12085 (IUD23_12085) | 19071..19199 | + | 129 | WP_234056444.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| IUD23_RS12090 (IUD23_12090) | 19251..19520 | - | 270 | WP_014607314.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| IUD23_RS12095 (IUD23_12095) | 19504..19734 | - | 231 | WP_038211605.1 | DUF6290 family protein | Antitoxin Detail |
| IUD23_RS12100 (IUD23_12100) | 19911..20513 | + | 603 | WP_013087965.1 | Tn3 family transposase TnBth3 | Transposase |
| IUD23_RS12105 (IUD23_12105) | 20510..21373 | + | 864 | WP_234056439.1 | plasmid replication initiator TrfA | - |
| IUD23_RS12110 (IUD23_12110) | 21817..22053 | + | 237 | WP_013087968.1 | antitoxin MazE family protein | - |
| IUD23_RS12115 (IUD23_12115) | 22050..22377 | + | 328 | Protein_28 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| IUD23_RS12120 (IUD23_12120) | 22482..22925 | - | 444 | WP_014607318.1 | hypothetical protein | - |
| IUD23_RS12125 (IUD23_12125) | 22926..23678 | - | 753 | WP_013087971.1 | hypothetical protein | - |
| IUD23_RS12130 (IUD23_12130) | 23691..23951 | - | 261 | WP_234056440.1 | hypothetical protein | - |
| IUD23_RS12135 (IUD23_12135) | 24324..24953 | + | 630 | WP_234056441.1 | hypothetical protein | Relaxase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Xylella fastidiosa | Non-Mobilizable plasmid | TA6120, TA24732 | NC_014111 | 1..25105 | 0 |