MGE detailed information
MGE type: Genomic_island MGE length: 11293 bp
Accession: NZ_CP090304 Location: 3186004..3197296 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain ZJUJY Replicon: chromosome
Accession: NZ_CP090304 Location: 3186004..3197296 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain ZJUJY Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPC12_RS15560 (3181932) | 3181932..3182387 | + | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| LPC12_RS15565 (3182529) | 3182529..3183758 | + | 1230 | WP_000036825.1 | amino acid permease | - |
| LPC12_RS15570 (3183789) | 3183789..3184061 | - | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| LPC12_RS15575 (3184183) | 3184183..3185049 | + | 867 | WP_000503682.1 | nickel/cobalt efflux protein RcnA | - |
| LPC12_RS15580 (3185259) | 3185259..3186017 | - | 759 | WP_000134792.1 | transcriptional regulator | - |
| LPC12_RS15585 (3186004) | 3186004..3186516 | - | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| LPC12_RS15590 (3186660) | 3186660..3187736 | - | 1077 | WP_000141329.1 | outer membrane protein | - |
| LPC12_RS15595 (3187733) | 3187733..3188476 | - | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| LPC12_RS15600 (3188517) | 3188517..3191006 | - | 2490 | WP_000705484.1 | Outer membrane usher protein PapC | VF |
| LPC12_RS15605 (3191126) | 3191126..3191710 | - | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| LPC12_RS15610 (3192429) | 3192429..3193061 | - | 633 | WP_000835265.1 | YfdX family protein | - |
| LPC12_RS15615 (3193108) | 3193108..3193644 | - | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| LPC12_RS15620 (3194324) | 3194324..3194782 | - | 459 | WP_000502119.1 | IS200-IS605 family transposase IS200F | Transposase |
| LPC12_RS15625 (3195162) | 3195162..3195560 | - | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| LPC12_RS15630 (3195560) | 3195560..3195787 | - | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| LPC12_RS15635 (3195964) | 3195964..3196215 | + | 252 | WP_001540858.1 | hypothetical protein | - |
| LPC12_RS15640 (3196490) | 3196490..3197296 | + | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| LPC12_RS15650 (3197581) | 3197581..3198339 | - | 759 | WP_000244329.1 | amidase activator ActS | - |
| LPC12_RS15655 (3198604) | 3198604..3199149 | + | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| LPC12_RS15660 (3199225) | 3199225..3200742 | - | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.004 |