MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 53947 bp
Accession: NZ_CP089948 Location: 968612..1022558 Organism: Streptococcus pneumoniae TIGR4 Replicon: chromosome
Accession: NZ_CP089948 Location: 968612..1022558 Organism: Streptococcus pneumoniae TIGR4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LXA46_RS04785 (LXA46_04775) | 963713..964792 | + | 1080 | WP_001028831.1 | peptide chain release factor 1 | - |
| LXA46_RS04790 (LXA46_04780) | 964792..965631 | + | 840 | WP_000761894.1 | peptide chain release factor N(5)-glutamine methyltransferase | - |
| LXA46_RS04795 (LXA46_04785) | 965615..966217 | + | 603 | WP_000969302.1 | L-threonylcarbamoyladenylate synthase | - |
| LXA46_RS04800 (LXA46_04790) | 966219..966650 | + | 432 | WP_000942962.1 | GNAT family N-acetyltransferase | - |
| LXA46_RS04805 (LXA46_04795) | 966712..967968 | + | 1257 | WP_000575527.1 | serine hydroxymethyltransferase | - |
| LXA46_RS04810 (LXA46_04800) | 967976..968950 | + | 975 | WP_000356096.1 | nucleoid-associated protein | - |
| LXA46_RS04815 (LXA46_04805) | 968950..969564 | + | 615 | WP_000476386.1 | cell wall hydrolase Pmp23 | - |
| LXA46_RS04820 (LXA46_04810) | 969638..970612 | + | 975 | WP_001227736.1 | DUF1002 domain-containing protein | - |
| LXA46_RS04825 (LXA46_04815) | 970686..972317 | + | 1632 | WP_000914584.1 | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | - |
| LXA46_RS04830 (LXA46_04820) | 972531..972809 | + | 279 | WP_000710803.1 | hypothetical protein | - |
| LXA46_RS04835 (LXA46_04825) | 973055..973273 | + | 219 | WP_001207345.1 | helix-turn-helix transcriptional regulator | - |
| LXA46_RS04840 (LXA46_04830) | 973666..974691 | + | 1026 | WP_000790743.1 | ABC transporter substrate-binding protein | - |
| LXA46_RS04845 (LXA46_04835) | 974681..975688 | + | 1008 | WP_001244687.1 | iron ABC transporter permease | - |
| LXA46_RS04850 (LXA46_04840) | 975688..976695 | + | 1008 | WP_001180357.1 | iron ABC transporter permease | - |
| LXA46_RS04855 (LXA46_04845) | 976695..977489 | + | 795 | WP_000677519.1 | ABC transporter ATP-binding protein | - |
| LXA46_RS04860 (LXA46_04850) | 977640..977824 | + | 185 | Protein_967 | IS3 family transposase | - |
| LXA46_RS04865 (LXA46_04855) | 977943..978266 | + | 324 | WP_229294054.1 | restriction endonuclease subunit S | - |
| LXA46_RS04870 (LXA46_04860) | 978247..978546 | + | 300 | Protein_969 | hypothetical protein | - |
| LXA46_RS04875 (LXA46_04865) | 979230..979391 | + | 162 | WP_000368174.1 | hypothetical protein | - |
| LXA46_RS04880 (LXA46_04870) | 979483..981162 | + | 1680 | WP_000031829.1 | recombinase family protein | - |
| LXA46_RS04885 (LXA46_04875) | 981430..981996 | + | 567 | WP_000234983.1 | hypothetical protein | - |
| LXA46_RS04890 (LXA46_04880) | 982318..982506 | + | 189 | WP_000179769.1 | hypothetical protein | - |
| LXA46_RS04895 (LXA46_04885) | 982568..983326 | + | 759 | WP_000262024.1 | ATP-grasp domain-containing protein | - |
| LXA46_RS04900 (LXA46_04890) | 983384..984238 | + | 855 | WP_000900015.1 | ADP-ribosylglycohydrolase family protein | - |
| LXA46_RS04905 (LXA46_04895) | 984350..985234 | + | 885 | WP_000710115.1 | diacylglycerol kinase family lipid kinase | - |
| LXA46_RS04910 (LXA46_04900) | 985397..987136 | + | 1740 | Protein_977 | glycoside hydrolase family 13 protein | - |
| LXA46_RS04915 (LXA46_04905) | 987411..987866 | + | 456 | Protein_978 | hypothetical protein | - |
| LXA46_RS04920 (LXA46_04910) | 988311..988787 | + | 477 | WP_000579608.1 | type II toxin-antitoxin system antitoxin PezA | Antitoxin Detail |
| LXA46_RS04925 (LXA46_04915) | 988787..989548 | + | 762 | WP_000405360.1 | type II toxin-antitoxin system toxin PezT | Toxin Detail |
| LXA46_RS04930 (LXA46_04920) | 989576..990352 | + | 777 | WP_001821017.1 | hypothetical protein | - |
| LXA46_RS04935 (LXA46_04925) | 990355..990732 | + | 378 | WP_000530001.1 | hypothetical protein | - |
| LXA46_RS04940 (LXA46_04930) | 991564..991920 | + | 357 | WP_000817623.1 | SAG1252 family conjugative relaxosome accessory protein | - |
| LXA46_RS04945 (LXA46_04935) | 991925..992290 | + | 366 | WP_000401239.1 | MobC family plasmid mobilization relaxosome protein | - |
| LXA46_RS04950 (LXA46_04940) | 992277..994100 | + | 1824 | WP_000237143.1 | SAG1250 family conjugative relaxase | - |
| LXA46_RS04955 (LXA46_04945) | 994214..995080 | + | 867 | WP_000537005.1 | helix-turn-helix transcriptional regulator | - |
| LXA46_RS04960 (LXA46_04950) | 995671..995922 | + | 252 | WP_000098314.1 | hypothetical protein | - |
| LXA46_RS04965 (LXA46_04955) | 996151..996453 | + | 303 | WP_000792536.1 | hypothetical protein | - |
| LXA46_RS04970 (LXA46_04960) | 996450..997796 | + | 1347 | WP_001105427.1 | protein kinase | - |
| LXA46_RS04975 (LXA46_04965) | 997828..998727 | + | 900 | WP_001808562.1 | ABC transporter ATP-binding protein | - |
| LXA46_RS04980 (LXA46_04970) | 998724..999524 | + | 801 | WP_000642567.1 | ABC transporter permease | - |
| LXA46_RS04985 (LXA46_04975) | 999682..1000155 | + | 474 | WP_001206386.1 | IS200/IS605-like element ISSpn6 family transposase | - |
| LXA46_RS04990 (LXA46_04980) | 1000412..1000633 | + | 222 | WP_000286244.1 | helix-turn-helix transcriptional regulator | - |
| LXA46_RS04995 (LXA46_04985) | 1001080..1001382 | + | 303 | Protein_994 | transposase family protein | - |
| LXA46_RS05000 (LXA46_04990) | 1001538..1002767 | + | 1230 | WP_000703352.1 | FtsW/RodA/SpoVE family cell cycle protein | - |
| LXA46_RS05005 (LXA46_04995) | 1002787..1005483 | + | 2697 | WP_000058203.1 | phosphoenolpyruvate carboxylase | - |
| LXA46_RS05010 (LXA46_05000) | 1005896..1006900 | + | 1005 | WP_000792163.1 | tryptophan ABC transporter substrate-binding protein | - |
| LXA46_RS05015 (LXA46_05005) | 1006969..1007835 | + | 867 | WP_000637238.1 | ABC transporter permease | - |
| LXA46_RS05020 (LXA46_05010) | 1007832..1008590 | + | 759 | WP_000125408.1 | ABC transporter ATP-binding protein | - |
| LXA46_RS05025 (LXA46_05015) | 1008680..1010440 | + | 1761 | WP_000227862.1 | DNA primase | - |
| LXA46_RS05030 (LXA46_05020) | 1010443..1011552 | + | 1110 | WP_000201898.1 | RNA polymerase sigma factor RpoD | - |
| LXA46_RS05035 (LXA46_05025) | 1011566..1011895 | + | 330 | WP_000331928.1 | metal-sulfur cluster assembly factor | - |
| LXA46_RS05040 (LXA46_05030) | 1012010..1013053 | + | 1044 | WP_000412280.1 | alpha-galactosylglucosyldiacylglycerol synthase | - |
| LXA46_RS05045 (LXA46_05035) | 1013069..1014394 | + | 1326 | WP_001219427.1 | glycosyltransferase family 4 protein | - |
| LXA46_RS05050 (LXA46_05040) | 1014425..1014601 | + | 177 | WP_001256250.1 | PspC domain-containing protein | - |
| LXA46_RS05055 (LXA46_05045) | 1014660..1014794 | + | 135 | WP_000863859.1 | DUF4044 domain-containing protein | - |
| LXA46_RS05060 (LXA46_05050) | 1014858..1016168 | + | 1311 | WP_000061641.1 | GTPase ObgE | - |
| LXA46_RS05065 (LXA46_05055) | 1016178..1016336 | + | 159 | WP_001808548.1 | hypothetical protein | - |
| LXA46_RS10930 | 1017211..1017336 | - | 126 | WP_001818214.1 | hypothetical protein | - |
| LXA46_RS05070 (LXA46_05060) | 1017479..1018738 | + | 1260 | WP_001227083.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| LXA46_RS05075 (LXA46_05065) | 1018754..1019305 | + | 552 | WP_001028732.1 | GNAT family N-acetyltransferase | - |
| LXA46_RS05080 (LXA46_05070) | 1019298..1020575 | + | 1278 | WP_000033830.1 | CBS-HotDog domain-containing transcription factor SpxR | - |
| LXA46_RS05085 (LXA46_05075) | 1020591..1021451 | + | 861 | WP_000631543.1 | methionyl aminopeptidase | - |
| LXA46_RS05090 (LXA46_05080) | 1021831..1022634 | + | 804 | Protein_1014 | IS5 family transposase | - |
| LXA46_RS05095 (LXA46_05085) | 1022825..1025116 | + | 2292 | WP_000992862.1 | DNA helicase PcrA | - |
| LXA46_RS05100 (LXA46_05090) | 1025159..1025839 | + | 681 | WP_000286922.1 | DNA repair protein RadC | - |
| LXA46_RS05105 (LXA46_05095) | 1025836..1026525 | - | 690 | WP_000743330.1 | gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | - |
| LXA46_RS05110 (LXA46_05100) | 1026543..1027184 | - | 642 | WP_000653403.1 | redox-sensing transcriptional repressor Rex | - |
| LXA46_RS05115 (LXA46_05105) | 1027267..1027482 | - | 216 | WP_000462487.1 | DUF4649 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Streptococcus pneumoniae TIGR4 | Integrative and Conjugative Element | TA10019, TA20634 | NC_003028 | 968351..1022298 | 0 |