MGE detailed information
MGE type: Conjugative plasmid MGE length: 132089 bp
Accession: NZ_CP087282 Location: 1..132089 Organism: Leclercia adecarboxylata strain SH19PE29 Replicon: plasmid pYUSHP29-2
Accession: NZ_CP087282 Location: 1..132089 Organism: Leclercia adecarboxylata strain SH19PE29 Replicon: plasmid pYUSHP29-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LO739_RS23405 (LO739_23400) | 615..1475 | + | 861 | WP_230431578.1 | RepB family plasmid replication initiator protein | - |
| LO739_RS23410 (LO739_23405) | 2131..3297 | + | 1167 | WP_159340470.1 | Sporulation initiation inhibitor protein Soj | VF |
| LO739_RS23415 (LO739_23410) | 3297..4265 | + | 969 | WP_172693753.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| LO739_RS23420 (LO739_23415) | 4835..5443 | + | 609 | WP_172693741.1 | hypothetical protein | - |
| LO739_RS23425 (LO739_23420) | 5678..5941 | + | 264 | WP_172693754.1 | hypothetical protein | - |
| LO739_RS23430 (LO739_23425) | 6390..7034 | + | 645 | WP_172693755.1 | DNA methyltransferase | - |
| LO739_RS23435 (LO739_23430) | 7031..7252 | + | 222 | WP_172693756.1 | hypothetical protein | - |
| LO739_RS23440 (LO739_23435) | 7305..7727 | + | 423 | WP_172693816.1 | DUF1380 family protein | - |
| LO739_RS23445 (LO739_23440) | 8081..8512 | + | 432 | WP_172693757.1 | antirestriction protein | - |
| LO739_RS23450 (LO739_23445) | 8635..8856 | + | 222 | WP_230431579.1 | hypothetical protein | - |
| LO739_RS23455 (LO739_23450) | 9726..9944 | + | 219 | WP_172693818.1 | hypothetical protein | - |
| LO739_RS23460 (LO739_23455) | 10005..10370 | + | 366 | WP_172693758.1 | hypothetical protein | - |
| LO739_RS23465 (LO739_23460) | 10438..12462 | + | 2025 | WP_230431580.1 | ParB N-terminal domain-containing protein | - |
| LO739_RS23470 (LO739_23465) | 12500..12934 | + | 435 | WP_172693760.1 | conjugation system SOS inhibitor PsiB | - |
| LO739_RS23475 (LO739_23470) | 12931..13662 | + | 732 | WP_172693761.1 | plasmid SOS inhibition protein A | - |
| LO739_RS23480 (LO739_23475) | 13659..13889 | + | 231 | WP_172693762.1 | hypothetical protein | - |
| LO739_RS23485 (LO739_23480) | 14241..14354 | + | 114 | WP_230431588.1 | DUF5431 family protein | - |
| LO739_RS23490 (LO739_23485) | 14302..14421 | + | 120 | WP_230431589.1 | Hok/Gef family protein | - |
| LO739_RS23495 (LO739_23490) | 14704..15189 | - | 486 | WP_172693763.1 | cytoplasmic protein | - |
| LO739_RS23500 (LO739_23495) | 15815..16207 | + | 393 | WP_230431581.1 | hypothetical protein | - |
| LO739_RS23505 (LO739_23500) | 16293..16754 | + | 462 | WP_172693764.1 | hypothetical protein | - |
| LO739_RS23510 (LO739_23505) | 16842..16988 | + | 147 | WP_172693765.1 | succinate dehydrogenase flavoprotein subunit | - |
| LO739_RS23515 (LO739_23510) | 17028..17822 | + | 795 | WP_172693766.1 | SAM-dependent DNA methyltransferase | - |
| LO739_RS23520 (LO739_23515) | 17865..18203 | + | 339 | WP_172693767.1 | hypothetical protein | - |
| LO739_RS23525 (LO739_23520) | 18960..19253 | + | 294 | WP_172693768.1 | hypothetical protein | - |
| LO739_RS23530 (LO739_23525) | 19268..20086 | + | 819 | WP_230431590.1 | DUF932 domain-containing protein | - |
| LO739_RS23535 (LO739_23530) | 20114..20653 | - | 540 | WP_172693819.1 | hypothetical protein | VF |
| LO739_RS23540 (LO739_23535) | 21264..21650 | + | 387 | WP_172693770.1 | relaxosome protein TraM | - |
| LO739_RS23545 (LO739_23540) | 21689..22330 | - | 642 | WP_172693771.1 | Arc family DNA-binding protein | - |
| LO739_RS23550 (LO739_23545) | 22527..22880 | + | 354 | WP_172693772.1 | type IV conjugative transfer system pilin TraA | - |
| LO739_RS23555 (LO739_23550) | 22884..23186 | + | 303 | WP_172693773.1 | type IV conjugative transfer system protein TraL | - |
| LO739_RS23560 (LO739_23555) | 23192..23776 | + | 585 | WP_172693774.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| LO739_RS23565 (LO739_23560) | 23788..24528 | + | 741 | WP_172693775.1 | type-F conjugative transfer system secretin TraK | - |
| LO739_RS23570 (LO739_23565) | 24525..25928 | + | 1404 | WP_172693776.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| LO739_RS23575 (LO739_23570) | 25939..26379 | + | 441 | WP_172693777.1 | hypothetical protein | - |
| LO739_RS23580 (LO739_23575) | 26373..26834 | + | 462 | WP_172693778.1 | hypothetical protein | - |
| LO739_RS23585 (LO739_23580) | 26865..27260 | + | 396 | WP_172693779.1 | hypothetical protein | - |
| LO739_RS23590 (LO739_23585) | 27318..27881 | + | 564 | WP_172693780.1 | type IV conjugative transfer system lipoprotein TraV | - |
| LO739_RS23595 (LO739_23590) | 27878..30478 | + | 2601 | WP_172693781.1 | type IV secretion system protein TraC | - |
| LO739_RS23600 (LO739_23595) | 30475..30879 | + | 405 | WP_172693782.1 | type-F conjugative transfer system protein TrbI | - |
| LO739_RS23605 (LO739_23600) | 30876..31511 | + | 636 | WP_172693783.1 | type-F conjugative transfer system protein TraW | - |
| LO739_RS23610 (LO739_23605) | 31508..31804 | + | 297 | WP_172693784.1 | hypothetical protein | - |
| LO739_RS23615 (LO739_23610) | 31795..32319 | + | 525 | WP_172693785.1 | hypothetical protein | - |
| LO739_RS23620 (LO739_23615) | 32391..32600 | + | 210 | WP_172693786.1 | hypothetical protein | - |
| LO739_RS23625 (LO739_23620) | 32732..33676 | + | 945 | WP_230431591.1 | conjugal transfer pilus assembly protein TraU | - |
| LO739_RS23630 (LO739_23625) | 33686..34303 | + | 618 | WP_172693788.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| LO739_RS23635 (LO739_23630) | 34300..36159 | + | 1860 | WP_172693789.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| LO739_RS23640 (LO739_23635) | 36156..36938 | + | 783 | WP_172693790.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| LO739_RS23645 (LO739_23640) | 36948..37424 | + | 477 | WP_230431582.1 | hypothetical protein | - |
| LO739_RS23650 (LO739_23645) | 37411..37632 | + | 222 | WP_172693792.1 | hypothetical protein | - |
| LO739_RS23655 (LO739_23650) | 37622..38221 | + | 600 | WP_172693793.1 | F-type conjugal transfer protein TrbB | - |
| LO739_RS23660 (LO739_23655) | 38239..38508 | + | 270 | WP_172693794.1 | hypothetical protein | - |
| LO739_RS23665 (LO739_23660) | 38501..39865 | + | 1365 | WP_172693795.1 | conjugal transfer pilus assembly protein TraH | - |
| LO739_RS23670 (LO739_23665) | 39865..43002 | + | 3138 | Protein_54 | conjugal transfer mating pair stabilization protein TraG | - |
| LO739_RS23675 (LO739_23670) | 44257..44814 | + | 558 | WP_172693796.1 | hypothetical protein | - |
| LO739_RS23680 (LO739_23675) | 44971..45702 | + | 732 | WP_172693797.1 | complement resistance protein TraT | - |
| LO739_RS23685 (LO739_23680) | 46410..49025 | + | 2616 | WP_230431583.1 | type IV conjugative transfer system coupling protein TraD | - |
| LO739_RS23690 (LO739_23685) | 49022..54454 | + | 5433 | WP_230431584.1 | Multifunctional conjugation protein TraI | Relaxase |
| LO739_RS23695 (LO739_23690) | 54479..55276 | + | 798 | WP_230431585.1 | DsbA family protein | - |
| LO739_RS23700 (LO739_23695) | 56123..57121 | - | 999 | WP_172693801.1 | tyrosine-type recombinase/integrase | - |
| LO739_RS23705 (LO739_23700) | 57383..58606 | + | 1224 | WP_230431586.1 | AAA family ATPase | - |
| LO739_RS23710 (LO739_23705) | 58603..59544 | + | 942 | WP_230431587.1 | hypothetical protein | - |
| LO739_RS23715 (LO739_23710) | 59541..61106 | + | 1566 | WP_172693805.1 | DUF262 domain-containing protein | - |
| LO739_RS23720 (LO739_23715) | 61531..61941 | + | 411 | WP_172693806.1 | hypothetical protein | - |
| LO739_RS23725 (LO739_23720) | 62065..62746 | - | 682 | Protein_65 | IS1 family transposase | - |
| LO739_RS23730 (LO739_23725) | 62937..63094 | + | 158 | Protein_66 | ISNCY family transposase ISKpn21 | Transposase |
| LO739_RS23735 (LO739_23730) | 63427..63582 | + | 156 | Protein_67 | IS3 family transposase ISYps8 | Transposase |
| LO739_RS23740 (LO739_23735) | 63665..64047 | + | 383 | Protein_68 | IS3 family transposase IS1400 | Transposase |
| LO739_RS23745 (LO739_23740) | 63956..64486 | - | 531 | WP_172693809.1 | DJ-1/PfpI family protein | - |
| LO739_RS23750 (LO739_23745) | 64612..64917 | + | 306 | WP_172693810.1 | antibiotic biosynthesis monooxygenase | - |
| LO739_RS23755 (LO739_23750) | 65087..65365 | - | 279 | Protein_71 | IS3 family transposase ISEc14 | Transposase |
| LO739_RS23760 (LO739_23755) | 65382..66458 | - | 1077 | WP_000227969.1 | IS110 family transposase ISEc21 | Transposase |
| LO739_RS23765 (LO739_23760) | 66740..67418 | - | 679 | Protein_73 | IS3 family transposase | - |
| LO739_RS23770 (LO739_23765) | 67575..69407 | + | 1833 | WP_172693811.1 | Methyl-accepting chemotaxis protein III | VF |
| LO739_RS23775 (LO739_23770) | 69527..70647 | + | 1121 | WP_172693812.1 | IS3 family transposase ISRaq1 | Transposase |
| LO739_RS23780 (LO739_23775) | 71268..71579 | + | 312 | WP_045898923.1 | type II toxin-antitoxin system HigB family toxin | Toxin Detail |
| LO739_RS23785 (LO739_23780) | 71576..71995 | + | 420 | WP_102752378.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| LO739_RS23790 (LO739_23785) | 72158..73305 | + | 1148 | WP_230431009.1 | IS3 family transposase ISEhe3 | Transposase |
| LO739_RS23795 (LO739_23790) | 73372..73683 | + | 312 | WP_230431557.1 | fimbrial protein | - |
| LO739_RS23800 (LO739_23795) | 73830..74949 | - | 1120 | Protein_80 | IS3-like element ISKpn34 family transposase | - |
| LO739_RS23805 (LO739_23800) | 75120..75245 | - | 126 | WP_230431592.1 | hypothetical protein | - |
| LO739_RS23810 (LO739_23805) | 75583..76068 | - | 486 | WP_172693814.1 | GNAT family N-acetyltransferase | Toxin Detail |
| LO739_RS23815 (LO739_23810) | 76056..76322 | - | 267 | WP_172693815.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| LO739_RS23820 (LO739_23815) | 76966..77979 | + | 1014 | WP_172693743.1 | plasmid replication initiator RepA | - |
| LO739_RS23825 (LO739_23820) | 78758..79519 | - | 762 | WP_230431593.1 | TraX family protein | - |
| LO739_RS23830 (LO739_23825) | 80269..80598 | - | 330 | WP_230431558.1 | hypothetical protein | - |
| LO739_RS23835 (LO739_23830) | 80595..81236 | - | 642 | WP_230431559.1 | hypothetical protein | - |
| LO739_RS23840 (LO739_23835) | 81272..82492 | - | 1221 | WP_230431560.1 | hypothetical protein | - |
| LO739_RS23845 (LO739_23840) | 82489..82749 | - | 261 | WP_172693747.1 | hypothetical protein | - |
| LO739_RS23850 (LO739_23845) | 83025..83204 | + | 180 | WP_004118349.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| LO739_RS23855 (LO739_23850) | 83191..83289 | + | 99 | WP_004118348.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LO739_RS23860 (LO739_23855) | 83326..83488 | + | 163 | Protein_92 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LO739_RS23865 (LO739_23860) | 83668..84102 | - | 435 | WP_004388336.1 | copper resistance system metallochaperone PcoE | - |
| LO739_RS23870 (LO739_23865) | 84318..85718 | - | 1401 | WP_002436614.1 | copper resistance membrane spanning protein PcoS | - |
| LO739_RS23875 (LO739_23870) | 85715..86395 | - | 681 | WP_001188930.1 | Transcriptional activator protein CopR | VF |
| LO739_RS23880 (LO739_23875) | 86450..87379 | - | 930 | WP_000998778.1 | copper resistance inner membrane protein PcoD | - |
| LO739_RS23885 (LO739_23880) | 87384..87764 | - | 381 | WP_000025662.1 | copper resistance system metallochaperone PcoC | - |
| LO739_RS23890 (LO739_23885) | 87804..88694 | - | 891 | WP_001378118.1 | copper resistance outer membrane transporter PcoB | - |
| LO739_RS23895 (LO739_23890) | 88700..90517 | - | 1818 | WP_230431561.1 | multicopper oxidase PcoA | - |
| LO739_RS23900 (LO739_23895) | 90752..91201 | + | 450 | WP_001023257.1 | copper resistance protein | - |
| LO739_RS23910 (LO739_23905) | 92472..93437 | + | 966 | WP_045332106.1 | LacI family DNA-binding transcriptional regulator | - |
| LO739_RS23915 (LO739_23910) | 93506..95239 | + | 1734 | WP_230431562.1 | alpha-glucosidase | - |
| LO739_RS23920 (LO739_23915) | 95299..96927 | + | 1629 | WP_062779820.1 | PTS transporter subunit IIBC | - |
| LO739_RS23925 (LO739_23920) | 97014..97820 | + | 807 | WP_073971254.1 | endonuclease/exonuclease/phosphatase family protein | - |
| LO739_RS23930 (LO739_23925) | 97857..98538 | - | 682 | Protein_106 | IS1 family transposase | - |
| LO739_RS23935 (LO739_23930) | 98588..99319 | + | 732 | WP_077228014.1 | Murein DD-endopeptidase MepM | VF |
| LO739_RS23940 (LO739_23935) | 99353..99550 | - | 198 | WP_000843497.1 | DUF2933 domain-containing protein | - |
| LO739_RS23945 (LO739_23940) | 99591..102062 | - | 2472 | WP_139565663.1 | Ag(+)-translocating P-type ATPase SilP | - |
| LO739_RS23950 (LO739_23945) | 102160..102600 | - | 441 | WP_002436620.1 | DUF411 domain-containing protein | - |
| LO739_RS23955 (LO739_23950) | 102687..105833 | - | 3147 | WP_103793516.1 | Cu(+)/Ag(+) efflux RND transporter permease subunit SilA | - |
| LO739_RS23960 (LO739_23955) | 105844..107136 | - | 1293 | WP_042946269.1 | Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB | - |
| LO739_RS23965 (LO739_23960) | 107250..107603 | - | 354 | WP_001246153.1 | cation efflux system protein CusF | - |
| LO739_RS23970 (LO739_23965) | 107632..109017 | - | 1386 | WP_000475503.1 | Cation efflux system protein CusC | VF |
| LO739_RS23975 (LO739_23970) | 109207..109887 | + | 681 | WP_000697968.1 | Transcriptional regulatory protein CusR | VF |
| LO739_RS23980 (LO739_23975) | 109880..111355 | + | 1476 | WP_230431563.1 | copper/silver sensor histidine kinase SilS | - |
| LO739_RS23985 (LO739_23980) | 111601..112032 | + | 432 | WP_007374411.1 | silver-binding protein SilE | - |
| LO739_RS23990 (LO739_23985) | 112178..112528 | + | 351 | WP_007871800.1 | DUF305 domain-containing protein | - |
| LO739_RS23995 (LO739_23990) | 112936..113844 | - | 909 | WP_007374408.1 | HNH endonuclease | - |
| LO739_RS24000 (LO739_23995) | 114555..115820 | - | 1266 | WP_230431564.1 | NO-inducible flavohemoprotein | - |
| LO739_RS24005 (LO739_24000) | 116065..116343 | + | 279 | WP_230431565.1 | sigma-S stabilization anti-adapter protein IraP | - |
| LO739_RS24010 (LO739_24005) | 117336..117737 | - | 402 | WP_230431566.1 | H-NS family nucleoid-associated regulatory protein | - |
| LO739_RS24015 (LO739_24010) | 118120..118413 | - | 294 | WP_230431567.1 | hypothetical protein | - |
| LO739_RS24020 (LO739_24015) | 118761..119192 | + | 432 | WP_230431568.1 | hypothetical protein | - |
| LO739_RS24025 (LO739_24020) | 120289..120480 | - | 192 | WP_230431569.1 | hypothetical protein | - |
| LO739_RS24030 (LO739_24025) | 120923..121942 | - | 1020 | WP_230431570.1 | alpha/beta hydrolase | - |
| LO739_RS24035 (LO739_24030) | 122641..123063 | + | 423 | WP_117089457.1 | MarR family transcriptional regulator | - |
| LO739_RS24040 (LO739_24035) | 123459..124931 | + | 1473 | WP_230431571.1 | aldehyde dehydrogenase family protein | - |
| LO739_RS24045 (LO739_24040) | 125026..125652 | + | 627 | WP_230431594.1 | TetR/AcrR family transcriptional regulator | - |
| LO739_RS24050 (LO739_24045) | 125782..126198 | - | 417 | WP_230431572.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LO739_RS24055 (LO739_24050) | 126195..126425 | - | 231 | WP_230431573.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| LO739_RS24060 (LO739_24055) | 126538..126789 | + | 252 | WP_230431574.1 | hypothetical protein | - |
| LO739_RS24065 (LO739_24060) | 126909..127484 | - | 576 | WP_230431575.1 | SLATT domain-containing protein | - |
| LO739_RS24070 (LO739_24065) | 127492..128820 | - | 1329 | WP_230431576.1 | nucleotidyltransferase | - |
| LO739_RS24075 (LO739_24070) | 129010..130377 | - | 1368 | WP_230431577.1 | hypothetical protein | - |
| LO739_RS24080 (LO739_24075) | 130388..131476 | - | 1089 | WP_230431595.1 | transcriptional repressor PifC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|