MGE detailed information
MGE type: Genomic_island MGE length: 11005 bp
Accession: NZ_CP086326 Location: 2427363..2438367 Organism: Lacticaseibacillus rhamnosus strain PMC203 Replicon: chromosome
Accession: NZ_CP086326 Location: 2427363..2438367 Organism: Lacticaseibacillus rhamnosus strain PMC203 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LL671_RS11160 (LL671_11165) | 2423333..2423620 | + | 288 | WP_005691648.1 | hypothetical protein | - |
| LL671_RS11165 (LL671_11170) | 2423832..2425565 | - | 1734 | WP_005691647.1 | pyruvate oxidase | - |
| LL671_RS11170 (LL671_11175) | 2426154..2427035 | + | 882 | WP_005684263.1 | class II fructose-1,6-bisphosphate aldolase | - |
| LL671_RS11175 (LL671_11180) | 2427164..2427382 | - | 219 | WP_005691646.1 | hypothetical protein | - |
| LL671_RS11180 (LL671_11185) | 2427614..2428795 | - | 1182 | WP_014571132.1 | RNA-guided endonuclease TnpB family protein | - |
| LL671_RS11185 (LL671_11190) | 2428830..2429426 | - | 597 | WP_005691643.1 | IS607 family transposase ISCbt3 | Transposase |
| LL671_RS11190 (LL671_11195) | 2429569..2430144 | - | 576 | WP_014571131.1 | DNA-3-methyladenine glycosylase I | - |
| LL671_RS11195 (LL671_11200) | 2430298..2431461 | - | 1164 | WP_005691640.1 | MFS transporter | - |
| LL671_RS11200 (LL671_11205) | 2431543..2431836 | - | 294 | WP_005684269.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| LL671_RS11205 (LL671_11210) | 2432079..2432327 | - | 249 | WP_005691639.1 | hypothetical protein | - |
| LL671_RS11210 (LL671_11215) | 2432889..2433161 | + | 273 | WP_014571130.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| LL671_RS11215 (LL671_11220) | 2433189..2433374 | + | 186 | WP_005691636.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| LL671_RS11220 (LL671_11225) | 2433598..2435013 | + | 1416 | WP_005691634.1 | exonuclease domain-containing protein | - |
| LL671_RS11225 (LL671_11230) | 2435256..2436131 | - | 876 | WP_024305787.1 | XRE family transcriptional regulator | - |
| LL671_RS11230 (LL671_11235) | 2436578..2437186 | + | 609 | WP_005691630.1 | hypothetical protein | - |
| LL671_RS11235 (LL671_11240) | 2437678..2438367 | - | 690 | WP_005691628.1 | rhomboid family intramembrane serine protease | - |
| LL671_RS11240 (LL671_11245) | 2438897..2439325 | + | 429 | WP_005691626.1 | OsmC family protein | - |
| LL671_RS11245 (LL671_11250) | 2439518..2440537 | + | 1020 | WP_005691624.1 | dihydroxyacetone kinase subunit DhaK | - |
| LL671_RS11250 (LL671_11255) | 2440524..2441105 | + | 582 | WP_005691622.1 | dihydroxyacetone kinase subunit DhaL | - |
| LL671_RS11255 (LL671_11260) | 2441254..2441622 | + | 369 | WP_005686376.1 | dihydroxyacetone kinase phosphoryl donor subunit DhaM | - |
| LL671_RS11260 (LL671_11265) | 2441712..2442278 | + | 567 | WP_005691618.1 | TetR/AcrR family transcriptional regulator | - |
| LL671_RS13885 | 2442364..2442495 | + | 132 | WP_005714982.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Lactobacillus rhamnosus Lc 705 | Genomic island | TA6139 | NC_013199 | 509097..519119 | 0.003 | |
| Lactobacillus rhamnosus ATCC 8530 | Genomic island | TA6144, TA6239 | NC_017491 | 509273..519295 | 0.004 |