MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP086118 Location: 879684..891009 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain S34 Replicon: chromosome
Accession: NZ_CP086118 Location: 879684..891009 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain S34 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLY43_RS04250 (875130) | 875130..876228 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| LLY43_RS04255 (876238) | 876238..877755 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| LLY43_RS04260 (877831) | 877831..878376 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| LLY43_RS04265 (878641) | 878641..879399 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| LLY43_RS04275 (879684) | 879684..880490 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| LLY43_RS04280 (880765) | 880765..881016 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| LLY43_RS04285 (881193) | 881193..881420 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| LLY43_RS04290 (881420) | 881420..881818 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| LLY43_RS04295 (882624) | 882624..883160 | + | 537 | WP_001038506.1 | STM3031 family outer membrane protein | - |
| LLY43_RS04300 (883207) | 883207..883839 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| LLY43_RS04305 (884558) | 884558..885142 | + | 585 | WP_001244638.1 | fimbrial protein | - |
| LLY43_RS04310 (885262) | 885262..887751 | + | 2490 | WP_000705483.1 | fimbrial outer membrane usher protein StdB | - |
| LLY43_RS04315 (887792) | 887792..888535 | + | 744 | WP_000798504.1 | fimbrial biogenesis chaperone StdC | - |
| LLY43_RS04320 (888532) | 888532..889608 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| LLY43_RS04325 (889752) | 889752..890264 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| LLY43_RS04330 (890251) | 890251..891009 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| LLY43_RS04335 (891219) | 891219..892061 | - | 843 | WP_000503690.1 | nickel/cobalt efflux protein RcnA | - |
| LLY43_RS04340 (892183) | 892183..892455 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| LLY43_RS04345 (892486) | 892486..893715 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| LLY43_RS04350 (893857) | 893857..894312 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| LLY43_RS04355 (894416) | 894416..895279 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |