MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 95688 bp
Accession: NZ_CP084588 Location: 1..95688 Organism: Mycobacterium intracellulare subsp. chimaera strain 852 Replicon: plasmid unnamed2
Accession: NZ_CP084588 Location: 1..95688 Organism: Mycobacterium intracellulare subsp. chimaera strain 852 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LFT50_RS30030 (LFT50_30030) | 1..948 | + | 948 | WP_007172301.1 | DUF4192 domain-containing protein | - |
| LFT50_RS30035 (LFT50_30035) | 1366..1710 | + | 345 | WP_007172302.1 | hypothetical protein | - |
| LFT50_RS30040 (LFT50_30040) | 1807..2343 | + | 537 | WP_007172303.1 | hypothetical protein | - |
| LFT50_RS30045 (LFT50_30045) | 2761..3807 | + | 1047 | WP_007172304.1 | DUF932 domain-containing protein | - |
| LFT50_RS30050 (LFT50_30050) | 4164..4688 | - | 525 | WP_007172305.1 | hypothetical protein | - |
| LFT50_RS30055 (LFT50_30055) | 4777..5256 | - | 480 | WP_007172306.1 | hypothetical protein | - |
| LFT50_RS30060 (LFT50_30060) | 5511..11369 | + | 5859 | WP_226057958.1 | Multifunctional conjugation protein TraI | Relaxase |
| LFT50_RS30065 (LFT50_30065) | 11453..11746 | + | 294 | WP_007172308.1 | hypothetical protein | - |
| LFT50_RS30070 (LFT50_30070) | 11787..13154 | - | 1368 | WP_023363493.1 | hypothetical protein | - |
| LFT50_RS30075 (LFT50_30075) | 13151..13696 | - | 546 | WP_139315437.1 | hypothetical protein | - |
| LFT50_RS30080 (LFT50_30080) | 13806..14327 | - | 522 | WP_007172312.1 | hypothetical protein | - |
| LFT50_RS30085 (LFT50_30085) | 15150..15716 | - | 567 | WP_007172315.1 | hypothetical protein | - |
| LFT50_RS30090 (LFT50_30090) | 15796..15945 | - | 150 | WP_007172316.1 | hypothetical protein | - |
| LFT50_RS30095 (LFT50_30095) | 15938..16354 | - | 417 | WP_139315438.1 | type IV secretion system protein VirD4 | - |
| LFT50_RS30100 (LFT50_30100) | 16501..17613 | - | 1113 | WP_007172318.1 | HD domain-containing protein | - |
| LFT50_RS30105 (LFT50_30105) | 17935..18201 | - | 267 | WP_007172320.1 | hypothetical protein | - |
| LFT50_RS30110 (LFT50_30110) | 18198..19601 | - | 1404 | WP_007172321.1 | type IV secretory system conjugative DNA transfer family protein | - |
| LFT50_RS30115 (LFT50_30115) | 19604..20269 | - | 666 | WP_040624365.1 | hypothetical protein | - |
| LFT50_RS30120 (LFT50_30120) | 20253..20687 | - | 435 | WP_007172323.1 | hypothetical protein | - |
| LFT50_RS30125 (LFT50_30125) | 20786..21091 | + | 306 | WP_007172324.1 | hypothetical protein | - |
| LFT50_RS30130 (LFT50_30130) | 21088..22302 | + | 1215 | WP_007172325.1 | hypothetical protein | - |
| LFT50_RS30135 (LFT50_30135) | 22319..23245 | + | 927 | WP_007172326.1 | conjugal transfer protein | - |
| LFT50_RS30140 (LFT50_30140) | 23259..23486 | + | 228 | WP_007172327.1 | hypothetical protein | - |
| LFT50_RS30145 (LFT50_30145) | 23512..23760 | + | 249 | WP_007172328.1 | hypothetical protein | - |
| LFT50_RS30150 (LFT50_30150) | 23808..24065 | + | 258 | WP_225336863.1 | glycosyl transferase family 39 | - |
| LFT50_RS30155 (LFT50_30155) | 24139..27120 | + | 2982 | WP_007172330.1 | ATP-binding protein | - |
| LFT50_RS30160 (LFT50_30160) | 27117..29186 | + | 2070 | WP_007172331.1 | hypothetical protein | - |
| LFT50_RS30165 (LFT50_30165) | 29220..29363 | - | 144 | WP_154074434.1 | hypothetical protein | - |
| LFT50_RS30170 (LFT50_30170) | 29515..29841 | - | 327 | WP_007172333.1 | hypothetical protein | - |
| LFT50_RS30175 (LFT50_30175) | 29849..31681 | - | 1833 | WP_007172334.1 | ESX-5 secretion system protein EccA5 | VF |
| LFT50_RS30180 (LFT50_30180) | 31704..33296 | - | 1593 | WP_007172335.1 | ESX-5 secretion system protein EccE5 | VF |
| LFT50_RS30185 (LFT50_30185) | 33296..34951 | - | 1656 | WP_225336864.1 | Mycosin-5 | VF |
| LFT50_RS30190 (LFT50_30190) | 35013..36527 | - | 1515 | WP_007172337.1 | ESX-5 secretion system protein EccD5 | VF |
| LFT50_RS30195 (LFT50_30195) | 36524..37996 | - | 1473 | WP_023363500.1 | MinD/ParA family protein | - |
| LFT50_RS30200 (LFT50_30200) | 38117..39037 | - | 921 | WP_007172339.1 | ESX-5 secretion-associated protein EspG5 | VF |
| LFT50_RS30205 (LFT50_30205) | 39116..39400 | - | 285 | WP_007172340.1 | ESAT-6-like protein EsxN | VF |
| LFT50_RS30210 (LFT50_30210) | 39445..39741 | - | 297 | WP_007172341.1 | WXG100 family type VII secretion target | - |
| LFT50_RS30215 (LFT50_30215) | 39885..41039 | - | 1155 | WP_007172342.1 | putative PPE family protein PPE51 | VF |
| LFT50_RS30220 (LFT50_30220) | 41069..41365 | - | 297 | WP_007172343.1 | PE family protein | - |
| LFT50_RS30225 (LFT50_30225) | 41459..45685 | - | 4227 | WP_007172344.1 | ESX-5 secretion system protein EccC5 | VF |
| LFT50_RS30230 (LFT50_30230) | 45682..47217 | - | 1536 | WP_225336956.1 | ESX-5 secretion system ATPase EccB5 | VF |
| LFT50_RS30235 (LFT50_30235) | 47241..48281 | - | 1041 | WP_023363502.1 | Murein DD-endopeptidase MepH | VF |
| LFT50_RS30240 (LFT50_30240) | 48367..49110 | - | 744 | WP_225336958.1 | hypothetical protein | - |
| LFT50_RS30245 (LFT50_30245) | 49534..50508 | - | 975 | WP_023363505.1 | hypothetical protein | - |
| LFT50_RS30250 (LFT50_30250) | 50610..50873 | + | 264 | WP_007172349.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| LFT50_RS30255 (LFT50_30255) | 50876..51292 | + | 417 | WP_040624374.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LFT50_RS30260 (LFT50_30260) | 51574..52905 | - | 1332 | WP_023363507.1 | IS256 family transposase IS2606 | Transposase |
| LFT50_RS30265 (LFT50_30265) | 53048..53629 | + | 582 | WP_007172352.1 | IS607 family transposase IS1535 | Transposase |
| LFT50_RS30270 (LFT50_30270) | 53629..55281 | + | 1653 | WP_040624340.1 | IS607 family transposase IS1535 | Transposase |
| LFT50_RS30275 (LFT50_30275) | 55387..55525 | + | 139 | Protein_49 | type II toxin-antitoxin system VapC family toxin | - |
| LFT50_RS30280 (LFT50_30280) | 55602..56324 | - | 723 | WP_023363510.1 | hypothetical protein | - |
| LFT50_RS30285 (LFT50_30285) | 56321..58645 | - | 2325 | WP_007172355.1 | hypothetical protein | - |
| LFT50_RS30290 (LFT50_30290) | 58655..59086 | - | 432 | WP_139315439.1 | hypothetical protein | - |
| LFT50_RS30295 (LFT50_30295) | 59317..59589 | - | 273 | WP_139315440.1 | hypothetical protein | - |
| LFT50_RS30300 (LFT50_30300) | 59713..60384 | - | 672 | WP_139315441.1 | hypothetical protein | - |
| LFT50_RS30305 (LFT50_30305) | 60494..61447 | - | 954 | WP_226057956.1 | DUF6036 family nucleotidyltransferase | - |
| LFT50_RS30310 (LFT50_30310) | 61688..62386 | - | 699 | WP_139315442.1 | hypothetical protein | - |
| LFT50_RS30315 (LFT50_30315) | 62400..63107 | - | 708 | WP_139315443.1 | hypothetical protein | - |
| LFT50_RS30320 (LFT50_30320) | 63325..63618 | - | 294 | WP_007172365.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LFT50_RS30325 (LFT50_30325) | 63615..63866 | - | 252 | WP_040624378.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| LFT50_RS30330 (LFT50_30330) | 63972..64478 | - | 507 | WP_007172367.1 | helix-turn-helix transcriptional regulator | - |
| LFT50_RS30335 (LFT50_30335) | 64785..65222 | + | 438 | WP_007172368.1 | WhiB family transcriptional regulator | - |
| LFT50_RS30340 (LFT50_30340) | 65278..65868 | + | 591 | WP_023363514.1 | hypothetical protein | - |
| LFT50_RS30345 (LFT50_30345) | 65831..66115 | + | 285 | WP_007172369.1 | hypothetical protein | - |
| LFT50_RS30350 (LFT50_30350) | 66492..68354 | + | 1863 | WP_023363516.1 | helicase associated domain-containing protein | - |
| LFT50_RS30355 (LFT50_30355) | 68515..68931 | + | 417 | WP_007172373.1 | hypothetical protein | - |
| LFT50_RS30360 (LFT50_30360) | 69293..70504 | + | 1212 | WP_023363518.1 | hypothetical protein | - |
| LFT50_RS30365 (LFT50_30365) | 70617..70958 | - | 342 | WP_007172375.1 | hypothetical protein | - |
| LFT50_RS31035 | 70955..72661 | - | 1707 | WP_023363520.1 | PPE domain-containing protein | - |
| LFT50_RS30375 (LFT50_30375) | 72678..72983 | - | 306 | WP_007172377.1 | type VII secretion target | - |
| LFT50_RS30380 (LFT50_30380) | 73059..73373 | - | 315 | WP_041321561.1 | hypothetical protein | - |
| LFT50_RS31040 | 73401..74921 | - | 1521 | WP_007172379.1 | DUF4226 domain-containing protein | - |
| LFT50_RS30390 (LFT50_30390) | 75143..75898 | - | 756 | WP_074021258.1 | DUF2637 domain-containing protein | - |
| LFT50_RS30395 (LFT50_30395) | 76700..77422 | + | 723 | WP_139315444.1 | ParA family protein | - |
| LFT50_RS30400 (LFT50_30400) | 77425..78186 | + | 762 | WP_023363524.1 | hypothetical protein | - |
| LFT50_RS30405 (LFT50_30405) | 78268..78552 | + | 285 | WP_007172404.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| LFT50_RS30410 (LFT50_30410) | 78549..78806 | + | 258 | WP_007172405.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| LFT50_RS30415 (LFT50_30415) | 79021..79314 | - | 294 | WP_007172406.1 | hypothetical protein | - |
| LFT50_RS30420 (LFT50_30420) | 79331..80302 | - | 972 | WP_226057957.1 | hypothetical protein | - |
| LFT50_RS30425 (LFT50_30425) | 81041..81610 | + | 570 | WP_007172408.1 | hypothetical protein | - |
| LFT50_RS30430 (LFT50_30430) | 81600..82700 | + | 1101 | WP_007172409.1 | tyrosine-type recombinase/integrase | - |
| LFT50_RS30435 (LFT50_30435) | 82819..83031 | + | 213 | WP_007172410.1 | hypothetical protein | - |
| LFT50_RS30440 (LFT50_30440) | 83608..85254 | + | 1647 | WP_007172412.1 | ParB/RepB/Spo0J family partition protein | - |
| LFT50_RS30445 (LFT50_30445) | 86018..86251 | + | 234 | WP_007172413.1 | glutaredoxin-like protein NrdH | - |
| LFT50_RS30450 (LFT50_30450) | 86285..86578 | + | 294 | WP_007172414.1 | hypothetical protein | - |
| LFT50_RS30455 (LFT50_30455) | 86578..87864 | + | 1287 | WP_007172415.1 | toprim domain-containing protein | - |
| LFT50_RS30460 (LFT50_30460) | 87861..88031 | + | 171 | WP_007172416.1 | hypothetical protein | - |
| LFT50_RS30465 (LFT50_30465) | 88055..88771 | + | 717 | WP_007172417.1 | hypothetical protein | - |
| LFT50_RS30470 (LFT50_30470) | 88747..88905 | - | 159 | WP_023363534.1 | hypothetical protein | - |
| LFT50_RS30475 (LFT50_30475) | 89244..89783 | + | 540 | WP_007172419.1 | hypothetical protein | - |
| LFT50_RS30480 (LFT50_30480) | 90191..90586 | + | 396 | WP_007172420.1 | hypothetical protein | - |
| LFT50_RS30485 (LFT50_30485) | 90616..91029 | + | 414 | WP_023363536.1 | hypothetical protein | - |
| LFT50_RS30490 (LFT50_30490) | 91452..91814 | + | 363 | WP_023363538.1 | hypothetical protein | - |
| LFT50_RS30495 (LFT50_30495) | 91935..92912 | + | 978 | WP_007172422.1 | DUF3560 domain-containing protein | - |
| LFT50_RS30500 (LFT50_30500) | 93334..93795 | + | 462 | WP_023363541.1 | hypothetical protein | - |
| LFT50_RS30505 (LFT50_30505) | 93878..94180 | + | 303 | WP_040624393.1 | hypothetical protein | - |
| LFT50_RS30510 (LFT50_30510) | 94601..95059 | + | 459 | WP_023363543.1 | hypothetical protein | - |
| LFT50_RS30515 (LFT50_30515) | 95094..95267 | + | 174 | WP_007172699.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|