MGE detailed information
MGE type: Genomic_island MGE length: 31916 bp
Accession: NZ_CP083990 Location: 1098334..1130249 Organism: Escherichia coli strain EC2648-Vir2 Replicon: chromosome
Accession: NZ_CP083990 Location: 1098334..1130249 Organism: Escherichia coli strain EC2648-Vir2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCH23_RS05280 (1094518) | 1094518..1095786 | - | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| LCH23_RS05285 (1095806) | 1095806..1096783 | - | 978 | WP_000993126.1 | glutarate dioxygenase GlaH | - |
| LCH23_RS05290 (1097119) | 1097119..1098843 | - | 1725 | Protein_1040 | alpha-amylase family glycosyl hydrolase | - |
| LCH23_RS05300 (1100792) | 1100792..1102165 | + | 1374 | Protein_1041 | DUF5507 domain-containing protein | - |
| LCH23_RS23830 (1102559) | 1102559..1102738 | + | 180 | WP_087676347.1 | DNA invertase | - |
| LCH23_RS05310 (1102893) | 1102893..1103012 | + | 120 | WP_001120794.1 | hypothetical protein | - |
| LCH23_RS05315 (1103077) | 1103077..1107657 | + | 4581 | WP_010723187.1 | putative autotransporter | VF |
| LCH23_RS05320 (1108021) | 1108021..1108350 | - | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| LCH23_RS05325 (1108371) | 1108371..1108688 | - | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| LCH23_RS05330 (1108726) | 1108726..1108926 | - | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| LCH23_RS05335 (1108935) | 1108935..1109417 | - | 483 | WP_001407480.1 | RadC family protein | - |
| LCH23_RS05340 (1109426) | 1109426..1109884 | - | 459 | WP_000211841.1 | antirestriction protein | - |
| LCH23_RS05345 (1109987) | 1109987..1110171 | - | 185 | Protein_1050 | DUF905 family protein | - |
| LCH23_RS05350 (1110782) | 1110782..1112485 | - | 1704 | WP_000896263.1 | protein YfjW | - |
| LCH23_RS05355 (1112627) | 1112627..1113636 | + | 1010 | Protein_1052 | arsenic transporter | - |
| LCH23_RS05360 (1113649) | 1113649..1113801 | + | 153 | Protein_1053 | arsenate reductase | - |
| LCH23_RS05365 (1114188) | 1114188..1114655 | - | 468 | WP_000702495.1 | protein YfjT | - |
| LCH23_RS05370 (1114679) | 1114679..1115122 | - | 444 | WP_000824222.1 | lipoprotein YfjS | - |
| LCH23_RS05375 (1115122) | 1115122..1115358 | - | 237 | WP_001144029.1 | protein YpjK | - |
| LCH23_RS05380 (1115399) | 1115399..1116100 | - | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| LCH23_RS05385 (1116317) | 1116317..1117138 | - | 822 | WP_000197391.1 | DUF932 domain-containing protein | - |
| LCH23_RS05390 (1117230) | 1117230..1118093 | - | 864 | WP_000787597.1 | GTPase family protein | - |
| LCH23_RS05395 (1118448) | 1118448..1118819 | - | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| LCH23_RS05400 (1118812) | 1118812..1119885 | - | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| LCH23_RS05405 (1120027) | 1120027..1120290 | + | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| LCH23_RS05410 (1120650) | 1120650..1122266 | + | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| LCH23_RS05415 (1122263) | 1122263..1124452 | + | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| LCH23_RS05420 (1124630) | 1124630..1125256 | - | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| LCH23_RS05425 (1125409) | 1125409..1126818 | - | 1410 | WP_000481742.1 | YfjI family protein | - |
| LCH23_RS05430 (1126947) | 1126947..1127159 | - | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| LCH23_RS05435 (1127203) | 1127203..1128159 | + | 957 | WP_000510827.1 | protein YfjH | - |
| LCH23_RS05440 (1128403) | 1128403..1129644 | - | 1242 | WP_000101723.1 | Prophage integrase IntA ; Integrase | Integrase |
| LCH23_RS05450 (1130425) | 1130425..1130907 | - | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| LCH23_RS05455 (1131078) | 1131078..1131515 | + | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| LCH23_RS05460 (1131505) | 1131505..1131795 | + | 291 | WP_001117838.1 | RnfH family protein | - |
| LCH23_RS05465 (1131857) | 1131857..1132198 | - | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| LCH23_RS05470 (1132347) | 1132347..1134008 | - | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| LCH23_RS05475 (1134094) | 1134094..1134972 | - | 879 | WP_001059169.1 | NAD(+) kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0.001 |