NZ_CP0838811..159955

MGE detailed information

MGE type: Conjugative plasmid        MGE length: 159955 bp
Accession: NZ_CP083881        Location: 1..159955         Organism: Escherichia coli strain NDM3       Replicon: plasmid unnamed1


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LCE26_RS22860 (299) 299..904 + 606 Protein_0 recombinase family protein -
LCE26_RS22865 (928) 928..1677 - 750 Protein_1 Tn3 family transposase TnpA_TnAs1 Transposase
LCE26_RS22870 (1681) 1681..2073 + 393 WP_001351729.1 isochorismatase family cysteine hydrolase -
LCE26_RS22875 (2211) 2211..3094 + 884 Protein_3 EamA family transporter -
LCE26_RS22880 (3126) 3126..4323 - 1198 Protein_4 tetracycline efflux MFS transporter Tet(A) -
LCE26_RS22885 (4429) 4429..5079 + 651 WP_000164043.1 tetracycline resistance transcriptional repressor TetR(A) -
LCE26_RS22890 (5111) 5111..5353 - 243 WP_032140899.1 hypothetical protein -
LCE26_RS22895 (5394) 5394..6907 - 1514 Protein_7 Tn3 family transposase TnpA_TnAs1 Transposase
LCE26_RS22900 (6973) 6973..7677 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
LCE26_RS22905 (7821) 7821..8375 + 555 WP_063840321.1 Aminoglycoside N(6')-acetyltransferase type 1 ARG
LCE26_RS22910 (8506) 8506..9336 + 831 WP_001334766.1 Beta-lactamase OXA-1 ARG
LCE26_RS22915 (9474) 9474..9914 + 441 Protein_11 CatB-related O-acetyltransferase -
LCE26_RS22920 (9968) 9968..10672 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
LCE26_RS22925 (10738) 10738..11025 + 288 Protein_13 IS1380 family transposase ISEcp1 Transposase
LCE26_RS22930 (11281) 11281..12156 + 876 WP_000239590.1 Beta-lactamase CTX-M-1 ARG
LCE26_RS22935 (12203) 12203..12535 - 333 WP_001393253.1 WbuC family cupin fold metalloprotein -
LCE26_RS22940 (12561) 12561..14779 + 2219 Protein_16 Tn3 family transposase TnpA_Tn3 Transposase
LCE26_RS22945 (14856) 14856..15558 + 703 Protein_17 IS6 family transposase IS26 Transposase
LCE26_RS22950 (15610) 15610..16074 + 465 Protein_18 IS6 family transposase IS6100 Transposase
LCE26_RS22955 (16564) 16564..17148 - 585 WP_001137892.1 macrolide-binding transcriptional repressor MphR(A) -
LCE26_RS22960 (17148) 17148..18386 - 1239 WP_000004159.1 macrolide resistance MFS transporter Mrx(A) -
LCE26_RS22965 (18383) 18383..19297 - 915 WP_023063803.1 hypothetical protein ARG
LCE26_RS22970 (19419) 19419..20123 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
LCE26_RS22975 (20288) 20288..20580 + 293 Protein_23 IS30 family transposase -
LCE26_RS22980 (20681) 20681..21493 + 813 WP_023408309.1 Metallo-beta-lactamase type 2 ARG
LCE26_RS22985 (21497) 21497..21862 + 366 WP_004201167.1 bleomycin binding protein Ble-MBL -
LCE26_RS22990 (21867) 21867..22505 + 639 WP_004201168.1 phosphoribosylanthranilate isomerase -
LCE26_RS22995 (22516) 22516..23073 - 558 Protein_27 twin-arginine translocation (TAT) pathway signal sequence domain protein -
LCE26_RS23000 (23173) 23173..23547 - 375 Protein_28 protein-disulfide reductase DsbD family protein -
LCE26_RS23005 (23860) 23860..25401 - 1542 WP_000050481.1 IS91 family transposase ISVsa3 Transposase
LCE26_RS23010 (25806) 25806..26645 - 840 WP_000259031.1 Dihydropteroate synthase ARG
LCE26_RS23015 (26639) 26639..26986 - 348 WP_000679427.1 Multidrug transporter EmrE ARG
LCE26_RS23020 (27103) 27103..27941 - 839 Protein_32 Streptomycin 3''-adenylyltransferase ARG
LCE26_RS23025 (27947) 27947..28237 - 291 WP_001336345.1 DUF1010 domain-containing protein -
LCE26_RS23030 (28349) 28349..28846 - 498 WP_001083725.1 Dihydrofolate reductase ARG
LCE26_RS23035 (28991) 28991..29857 + 867 Protein_35 IS91 family transposase ISAzo26 Transposase
LCE26_RS23040 (29912) 29912..30616 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
LCE26_RS23045 (31171) 31171..31455 + 285 WP_001387467.1 ribbon-helix-helix domain-containing protein Antitoxin Detail
LCE26_RS23050 (31455) 31455..31730 + 276 WP_000421272.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
LCE26_RS23060 (32613) 32613..32816 + 204 Protein_40 hypothetical protein -
LCE26_RS23065 (32941) 32941..33069 - 129 Protein_41 IS481 family transposase -
LCE26_RS23070 (33102) 33102..34271 - 1170 WP_001072355.1 hypothetical protein -
LCE26_RS23075 (34803) 34803..35071 + 269 Protein_43 type II toxin-antitoxin system ParD family antitoxin -
LCE26_RS23080 (35058) 35058..35347 + 290 Protein_44 type II toxin-antitoxin system RelE/ParE family toxin -
LCE26_RS23085 (35414) 35414..35596 + 183 WP_042344623.1 hypothetical protein -
LCE26_RS23090 (35717) 35717..36457 + 741 WP_001066953.1 tyrosine-type recombinase/integrase -
LCE26_RS23095 (36742) 36742..37719 - 978 WP_000361611.1 RepB family plasmid replication initiator protein -
LCE26_RS23100 (38476) 38476..39448 + 973 Protein_48 hypothetical protein -
LCE26_RS23105 (39607) 39607..39834 - 228 WP_013023899.1 abortive infection family protein -
LCE26_RS23110 (39913) 39913..40610 + 698 WP_224434100.1 IS1 family transposase IS1R Transposase
LCE26_RS23115 (40739) 40739..41436 + 698 WP_224434100.1 IS1 family transposase IS1R Transposase
LCE26_RS23120 (41636) 41636..42568 - 933 WP_058682609.1 S-4TM family putative pore-forming effector -
LCE26_RS23125 (42572) 42572..43567 - 996 WP_000246636.1 hypothetical protein -
LCE26_RS23130 (44275) 44275..44493 + 219 WP_000813634.1 type II toxin-antitoxin system antitoxin CcdA Antitoxin Detail
LCE26_RS23135 (44495) 44495..44800 + 306 WP_001159868.1 type II toxin-antitoxin system toxin CcdB Toxin Detail
LCE26_RS23140 (44801) 44801..45607 + 807 WP_000016982.1 site-specific integrase -
LCE26_RS23145 (46381) 46381..47136 + 756 WP_000852146.1 replication initiation protein RepE -
LCE26_RS23150 (47724) 47724..48890 + 1167 WP_000772446.1 Sporulation initiation inhibitor protein Soj VF
LCE26_RS23155 (48890) 48890..49861 + 972 WP_000817036.1 ParB/RepB/Spo0J family plasmid partition protein -
LCE26_RS23160 (50728) 50728..51630 + 903 WP_001507408.1 DUF1281 domain-containing protein -
LCE26_RS23165 (51627) 51627..51938 + 312 WP_032260558.1 hypothetical protein -
LCE26_RS23170 (52014) 52014..52697 + 684 WP_000086148.1 DNA methylase -
LCE26_RS23175 (52698) 52698..52919 + 222 WP_001104867.1 hypothetical protein -
LCE26_RS23180 (52900) 52900..53367 + 468 WP_223368614.1 DUF1380 family protein -
LCE26_RS23185 (53418) 53418..54194 + 777 WP_001753849.1 hypothetical protein -
LCE26_RS23190 (54611) 54611..55036 + 426 WP_001198941.1 antirestriction protein -
LCE26_RS23195 (55006) 55006..55497 + 492 WP_223368613.1 DUF1380 domain-containing protein -
LCE26_RS23200 (55497) 55497..55688 + 192 WP_001027495.1 hypothetical protein -
LCE26_RS23205 (56050) 56050..56200 - 151 Protein_69 hypothetical protein -
LCE26_RS23210 (56717) 56717..56947 + 231 WP_000218642.1 hypothetical protein -
LCE26_RS23215 (56999) 56999..58360 + 1362 WP_086352864.1 DUF3560 domain-containing protein -
LCE26_RS23220 (58408) 58408..58971 + 564 WP_029702196.1 class I SAM-dependent methyltransferase -
LCE26_RS23225 (59057) 59057..59233 - 177 Protein_73 pilus protein -
LCE26_RS23230 (59346) 59346..61013 - 1668 WP_012372796.1 group II intron reverse transcriptase/maturase -
LCE26_RS23235 (62675) 62675..63244 - 570 WP_089634947.1 hypothetical protein -
LCE26_RS23245 (64548) 64548..65306 + 759 Protein_77 site-specific integrase -
LCE26_RS23250 (65464) 65464..66474 + 1011 WP_000053332.1 substrate-binding domain-containing protein -
LCE26_RS23255 (66570) 66570..68696 + 2127 WP_000253905.1 alpha-galactosidase -
LCE26_RS23260 (68759) 68759..70036 + 1278 WP_001083369.1 MFS transporter -
LCE26_RS23265 (70033) 70033..71466 + 1434 WP_024170639.1 glycoside hydrolase family 32 protein -
LCE26_RS23270 (71661) 71661..73055 + 1395 WP_001037799.1 carbohydrate porin -
LCE26_RS23275 (73301) 73301..73405 - 105 Protein_83 thiosulfate reductase cytochrome B subunit -
LCE26_RS23280 (73462) 73462..74155 + 694 Protein_84 IS1 family transposase IS1A Transposase
LCE26_RS23285 (74282) 74282..74794 + 513 WP_223350513.1 potassium channel family protein -
LCE26_RS23290 (74879) 74879..75130 + 252 Protein_86 iron-containing alcohol dehydrogenase -
LCE26_RS23295 (75419) 75419..75736 - 318 Protein_87 IS110 family transposase -
LCE26_RS23300 (75891) 75891..75996 + 106 Protein_88 plasmid SOS inhibition protein A -
- (75965) 75965..76163 + 199 NuclAT_0 - Antitoxin Detail
- (75965) 75965..76163 + 199 NuclAT_0 - Antitoxin Detail
- (75965) 75965..76163 + 199 NuclAT_0 - Antitoxin Detail
- (75965) 75965..76163 + 199 NuclAT_0 - Antitoxin Detail
LCE26_RS23305 (76170) 76170..76319 + 150 Protein_89 DUF5431 family protein -
LCE26_RS23310 (76270) 76270..76386 + 117 WP_001375150.1 type I toxin-antitoxin system Hok family toxin Toxin Detail
LCE26_RS23315 (76687) 76687..76984 - 298 Protein_91 hypothetical protein -
LCE26_RS23320 (77054) 77054..77260 + 207 WP_000275854.1 hypothetical protein -
LCE26_RS23325 (77285) 77285..77572 + 288 WP_000107242.1 hypothetical protein -
LCE26_RS23330 (77691) 77691..78512 + 822 WP_001234465.1 DUF932 domain-containing protein -
LCE26_RS23335 (78808) 78808..79380 - 573 WP_000949660.1 hypothetical protein VF
LCE26_RS23340 (79750) 79750..80133 + 384 WP_001063020.1 conjugal transfer relaxosome DNA-binding protein TraM -
LCE26_RS23345 (80324) 80324..80971 + 648 WP_000332520.1 conjugal transfer transcriptional regulator TraJ -
LCE26_RS23350 (81107) 81107..81322 + 216 WP_001352842.1 conjugal transfer relaxosome protein TraY -
LCE26_RS23355 (81365) 81365..81730 + 366 WP_000340282.1 type IV conjugative transfer system pilin TraA -
LCE26_RS23360 (81745) 81745..82056 + 312 WP_000012106.1 type IV conjugative transfer system protein TraL -
LCE26_RS23365 (82078) 82078..82644 + 567 WP_000399790.1 type IV conjugative transfer system protein TraE -
LCE26_RS23370 (82631) 82631..83359 + 729 WP_001230813.1 type-F conjugative transfer system secretin TraK -
LCE26_RS23375 (83359) 83359..84786 + 1428 WP_001553836.1 F-type conjugal transfer pilus assembly protein TraB -
LCE26_RS23380 (84776) 84776..85366 + 591 WP_000002787.1 conjugal transfer pilus-stabilizing protein TraP -
LCE26_RS23385 (85353) 85353..85673 + 321 Protein_105 conjugal transfer protein TrbD -
LCE26_RS23390 (85666) 85666..85917 + 252 WP_001038342.1 conjugal transfer protein TrbG -
LCE26_RS23395 (85914) 85914..86429 + 516 WP_000809832.1 type IV conjugative transfer system lipoprotein TraV -
LCE26_RS23400 (86564) 86564..86785 + 222 WP_001278692.1 conjugal transfer protein TraR -
LCE26_RS23405 (86945) 86945..89572 + 2628 WP_039021964.1 type IV secretion system protein TraC -
LCE26_RS23410 (89569) 89569..89955 + 387 WP_000214092.1 type-F conjugative transfer system protein TrbI -
LCE26_RS23415 (89952) 89952..90584 + 633 WP_001203720.1 type-F conjugative transfer system protein TraW -
LCE26_RS23420 (90581) 90581..91573 + 993 WP_000830839.1 conjugal transfer pilus assembly protein TraU -
LCE26_RS23425 (91582) 91582..92220 + 639 WP_000777692.1 type-F conjugative transfer system pilin assembly protein TrbC -
LCE26_RS23430 (92217) 92217..94025 + 1809 WP_000821821.1 type-F conjugative transfer system mating-pair stabilization protein TraN -
LCE26_RS23435 (94052) 94052..94309 + 258 WP_000864352.1 conjugal transfer protein TrbE -
LCE26_RS23440 (94302) 94302..95045 + 744 WP_001430248.1 type-F conjugative transfer system pilin assembly protein TraF -
LCE26_RS23445 (95059) 95059..95400 + 342 WP_000556794.1 conjugal transfer protein TrbA -
LCE26_RS23450 (95381) 95381..95716 - 336 WP_000415571.1 hypothetical protein -
LCE26_RS23455 (95797) 95797..96081 + 285 WP_000624105.1 type-F conjugative transfer system pilin chaperone TraQ -
LCE26_RS23460 (96068) 96068..96622 + 555 WP_001553830.1 type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB -
LCE26_RS23465 (96552) 96552..96925 + 374 Protein_121 P-type conjugative transfer protein TrbJ -
LCE26_RS23470 (96879) 96879..97271 + 393 WP_001553828.1 F-type conjugal transfer protein TrbF -
LCE26_RS23475 (97258) 97258..98631 + 1374 WP_001553827.1 conjugal transfer pilus assembly protein TraH -
LCE26_RS23480 (98628) 98628..101453 + 2826 WP_001553826.1 conjugal transfer mating-pair stabilization protein TraG -
LCE26_RS23485 (101450) 101450..101959 + 510 WP_000628100.1 conjugal transfer entry exclusion protein TraS -
LCE26_RS23490 (101973) 101973..102704 + 732 WP_000850424.1 conjugal transfer complement resistance protein TraT -
LCE26_RS23495 (102956) 102956..105154 + 2199 WP_046464200.1 type IV conjugative transfer system coupling protein TraD -
LCE26_RS23500 (105154) 105154..110274 + 5121 WP_013362805.1 Multifunctional conjugation protein TraI Relaxase
LCE26_RS23505 (110294) 110294..111040 + 747 WP_187795572.1 conjugal transfer pilus acetylase TraX -
LCE26_RS23510 (111095) 111095..111655 + 561 WP_000139363.1 fertility inhibition protein FinO -
LCE26_RS23515 (111789) 111789..112001 + 213 WP_005012601.1 hypothetical protein -
LCE26_RS23520 (112302) 112302..112391 - 90 Protein_132 IS1 family transposase -
LCE26_RS23525 (112446) 112446..113123 + 678 WP_001339397.1 IS66 family transposase ISCro1 Transposase
LCE26_RS23530 (113123) 113123..113470 + 348 WP_000624622.1 IS66 family transposase ISCro1 Transposase
LCE26_RS23535 (113490) 113490..115061 + 1572 WP_023149734.1 IS66 family transposase ISCro1 Transposase
LCE26_RS23540 (115099) 115099..115715 - 617 Protein_136 IS1-like element IS1A family transposase -
LCE26_RS23545 (115816) 115816..115998 + 183 WP_000968309.1 hypothetical protein -
- (116137) 116137..116198 - 62 NuclAT_1 - -
- (116137) 116137..116198 - 62 NuclAT_1 - -
- (116137) 116137..116198 - 62 NuclAT_1 - -
- (116137) 116137..116198 - 62 NuclAT_1 - -
LCE26_RS23550 (116242) 116242..116391 + 150 WP_001312851.1 Hok/Gef family protein -
LCE26_RS23555 (116675) 116675..116932 + 258 WP_000083833.1 replication regulatory protein RepA -
LCE26_RS23560 (117168) 117168..117242 + 75 WP_032336874.1 RepA leader peptide Tap -
LCE26_RS23565 (117235) 117235..117681 + 447 Protein_141 plasmid replication initiator RepA -
LCE26_RS23570 (117681) 117681..118295 - 615 Protein_142 VENN motif pre-toxin domain-containing protein -
LCE26_RS23575 (119002) 119002..120222 + 1221 WP_000410951.1 arginine deiminase -
LCE26_RS23580 (120233) 120233..121144 + 912 WP_000440183.1 carbamate kinase -
LCE26_RS23585 (121229) 121229..122233 + 1005 WP_000154545.1 Ornithine carbamoyltransferase VF
LCE26_RS23590 (122281) 122281..123684 + 1404 WP_000514417.1 YfcC family protein -
LCE26_RS23595 (123765) 123765..124244 + 480 WP_001496175.1 ArgR family transcriptional regulator -
LCE26_RS23600 (124308) 124308..124496 - 189 Protein_148 transposase domain-containing protein -
LCE26_RS23605 (124557) 124557..125690 + 1134 WP_000555401.1 IS110 family transposase ISEc45 Transposase
LCE26_RS23610 (125944) 125944..126096 - 153 Protein_150 transposase -
LCE26_RS23615 (126099) 126099..126269 - 171 Protein_151 IS66 family transposase -
LCE26_RS23620 (126300) 126300..126650 - 351 WP_000624725.1 IS66 family transposase ISEc47 Transposase
LCE26_RS23625 (126647) 126647..127003 - 357 WP_000229735.1 IS66 family transposase ISEc23 Transposase
LCE26_RS23635 (127848) 127848..128426 + 579 WP_032152936.1 DUF2726 domain-containing protein -
LCE26_RS23640 (128839) 128839..129192 - 354 WP_000005489.1 hypothetical protein -
LCE26_RS23645 (129664) 129664..130686 - 1023 WP_000156883.1 IS110 family transposase ISSm1 Transposase
LCE26_RS23650 (131091) 131091..131348 + 258 WP_000083821.1 replication regulatory protein RepA -
LCE26_RS23655 (131583) 131583..131657 + 75 WP_001365705.1 RepA leader peptide Tap -
LCE26_RS23660 (131650) 131650..132507 + 858 WP_032152935.1 incFII family plasmid replication initiator RepA -
LCE26_RS23665 (133446) 133446..134099 + 654 WP_000616807.1 CPBP family intramembrane metalloprotease -
LCE26_RS23670 (134192) 134192..134449 + 258 WP_000557619.1 type II toxin-antitoxin system antitoxin PemI -
LCE26_RS23675 (134382) 134382..134783 + 402 WP_001398199.1 type II toxin-antitoxin system toxin endoribonuclease PemK -
LCE26_RS23680 (134920) 134920..137817 - 2898 WP_001553819.1 Tn3 family transposase TnpA_Tn5403 Transposase
LCE26_RS23685 (137912) 137912..138517 + 606 WP_000509965.1 Tn3 family transposase TnpR_Tn5403 Transposase
LCE26_RS23690 (138541) 138541..139290 - 750 Protein_166 Tn3 family transposase TnpA_TnAs1 Transposase
LCE26_RS23695 (139294) 139294..139683 + 390 WP_224435172.1 isochorismatase family protein -
LCE26_RS23700 (139821) 139821..140705 + 885 WP_000058717.1 EamA family transporter -
LCE26_RS23705 (140737) 140737..141936 - 1200 WP_000804064.1 Tetracycline resistance protein, class C ARG
LCE26_RS23710 (142042) 142042..142692 + 651 WP_000164043.1 tetracycline resistance transcriptional repressor TetR(A) -
LCE26_RS23715 (142724) 142724..142966 - 243 WP_032140899.1 hypothetical protein -
LCE26_RS23720 (143008) 143008..144522 - 1515 Protein_172 Tn3 family transposase TnpA_TnAs1 Transposase
LCE26_RS23725 (144588) 144588..145294 + 707 Protein_173 IS6 family transposase IS15DII Transposase
LCE26_RS23730 (145438) 145438..145992 + 555 WP_063840321.1 Aminoglycoside N(6')-acetyltransferase type 1 ARG
LCE26_RS23735 (146122) 146122..146952 + 831 WP_001334766.1 Beta-lactamase OXA-1 ARG
LCE26_RS23740 (147089) 147089..147531 + 443 Protein_176 CatB-related O-acetyltransferase -
LCE26_RS23745 (147585) 147585..148289 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
LCE26_RS23750 (148355) 148355..148642 + 288 Protein_178 IS1380 family transposase ISEcp1 Transposase
LCE26_RS23755 (148898) 148898..149773 + 876 WP_000239590.1 Beta-lactamase CTX-M-1 ARG
LCE26_RS23760 (149820) 149820..150112 - 293 Protein_180 WbuC family cupin fold metalloprotein -
LCE26_RS23765 (150177) 150177..152396 + 2220 Protein_181 Tn3 family transposase TnpA_Tn3 Transposase
LCE26_RS23770 (152473) 152473..153177 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
LCE26_RS23775 (153229) 153229..153693 + 465 Protein_183 IS6 family transposase IS6100 Transposase
LCE26_RS23780 (154186) 154186..154770 - 585 WP_001137892.1 macrolide-binding transcriptional repressor MphR(A) -
LCE26_RS23785 (154770) 154770..156008 - 1239 WP_000004159.1 macrolide resistance MFS transporter Mrx(A) -
LCE26_RS23790 (156005) 156005..156919 - 915 WP_023063803.1 hypothetical protein ARG
LCE26_RS23795 (157041) 157041..157745 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
LCE26_RS23800 (157910) 157910..158203 + 294 Protein_188 IS30 family transposase ISAba125 Transposase
LCE26_RS23805 (158304) 158304..159116 + 813 WP_023408309.1 Metallo-beta-lactamase type 2 ARG
LCE26_RS23810 (159120) 159120..159484 + 365 Protein_190 bleomycin binding protein Ble-MBL -
LCE26_RS23815 (159489) 159489..159953 + 465 Protein_191 N-(5'-phosphoribosyl)anthranilate isomerase -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance